Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001321

Physical Location & Seq

Genomic Coordinates Forward (+)

3270904 .. 3277088

Gene Structure 6185 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g06180.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3042 bp

ATGACAACACCAAAACCTTGTCTATACACCCTTCTCTTCTTCATCTTCCTCATCCATGCCAACTCTCAGTCCCTTCAAGACAAGGAAGTAGTAGTCCTGCTCAAGTTAAAGTCATATTGGCTATCTCCACCGGCCCTCAGCCATTGGACTTCATCATCAAACTCTAGTTCCCACTGTAGCTGGCCAGAGATCACCTGCACCGAGAACTCCGTTACCGGATTAGTTCTCTACAACGTAAACCTCACCCTTCAAGTTCCGCCCTTCATTTGTGACCTCAACAACCTCACACACCTTGACCTTGGTGATAACTACCTCCCGGGAGATTTTCCCTTGTCTCTCTACAACTGCTCCAAGTTAGAGTACTTGGACCTCTCAAAGAACTACTTTGTGGGAACTATTCCTGATGACATCGACAAATTGCCTAAGCTGCAGACGCTCATTCTCGCCGGCAACAACTTCTCCGGTGACATTCCTGCGTCTATTGGGAAGTTGCAGGAGCTGACAACTTTGCATTTATACATGAACCAGTTCAACGGCTCTGTCCCTGCAGAAATAGGTAACCTCTCCAACCTTGAGTTCCTCTGGCTCTCTTGGCTTCCCAAAATGGCGCCATGGAAGCTGCCTTTTGAATTCACCATGTTCAAAAAGATGAAGACATTGAAGATTCGTGAAGCGAATTTGATAGGAGAGATACCGGAGTCTGTTGGAGAAATGGAAGCACTTGAAGAATTGGATATGTCGATAAACAACTTGAGCGGGAAAATACCAAGTGGTGTGTTACTGTTGAAGCATTTGAGCATTATCTATCTCTTCAAGAACAGACTTTCAGGGGAGATTCCTCAAGTGGTTGAAGCATTCAACTTGACCATAATCGACATCTCAGAGAACAATTTCACAGGGCCAATACCACAAGGTTTCGGAAACCTTACTAAGTTGACAGACATGAGTTTGTTCTACAATGATGGTATTTCAGGTGAGATTCCAGAGGGAATTGGCCTCCTGCCAAATCTTGTGATTTTCAAAATGTTCAACATGAACTTGTCAGGTACAATTCCTCCAGAGTTTGGTAAGCATTCGCCGCTTGAAGATTTCCAGGTTTCGGTGAATAGGCTTACCGGGAAGCTGCCAGACGGTTTGTGTAAAAATGGTAAGCTTGTGGGAGTTGTTGCTTATGACAATAGTCTCACTGGGGGGCTACCAAGCTCTCTTGAAAATTGTGATAGTCTGCTGGTAGTCACAGTTTATGATAACAAGTTATCCGGGGACATTCCTAGTGGTATGTGGAATGCATTGAACTTGACTTATGTGCTGATAAGCAACAATTCACTTACGGGTGAGCTTCCTGAGAAGATGTCAGATAATCTTCTAAGGGTGGAAATAGCTGACAACAAGTTTTCCGGTCAGATTCCAAGAGGGGTGTCTTCCTGCAAGAAGCTGCAAGTTTTTGATGCTCGTAAGAACCTCTTGAATGGCACTATTCCTCAGGAATTAACTACTCTTCCGAGCTTGTCGAGTCTTCTCCTTCATCAGAATCGGCTTAGCGGGCCACTTCCATCAGATATTGTATCATGGGAGTCGCTAAACATTCTTGATCTGAGCAGAAATCAACTCTCCGGACCAATTCCAGAGAAACTTGGTGTTTTGCCATCTCTTACTGAGTTGGACCTCTCAGAAAACCAATTTTCTGGCGAGATTCCAAATCAATTTGCCATTCTGAAACTCAACAATTTAAACCTGTCTTCAAATCTCCTCACTGGCGAGATACCAACTTCACTTGAAAACTCTGCGAATGAGAGAAGCTTCTTGAACAATACTGCTCTATGTGCAAGCACCAGTGGTTTCAATGTCAATATATGTTCTAGATCACCAACCTCCGGCAAGATTTCAAATTGGTCTCTAGCTTTGATCTTAAGTCTAAGCGCGGTGTCGTTCCTGTTGGTTCTGTTCTTATTAGTCTTCTTTGTTAGAGGATACAGGAGAAAGAAGGATGGATCACACGCAGACTGGAAACTCACTTCATTTCAGAGGTGCAATTTCACCTTATCAAAAATCTTGGCAGGGTTGACAGAAGGCAATGTGATTGGAAGTGGTGGATCAGGAAAGGTTTATCGTGTACCTGTGAATCGTATAGGTGATGTTGTAGCTGCAAAGAGGATTTGGACCAACAAGAATATCATGGAGGATAGGCTTGAAAAACAGTTTCTTGCAGAAGTCAAGATACTGAGCTCAATTCGACATGCCAATATAGTGAAGCTGATGTGCTGCATTTCCAGTGAGAGTTCGAAACTTCTTGTATATGAGTACTCAGACAATCGCAGCCTAGACCGATGGTTGCACAAGAAAAACGAAACATCCCTATCCAACCTCTCAAGTTCAGTTCATCATGTTGTCCTGGACTGGCCTAAGAGGTTGCAGATTGCAGTGGGAGCTGCTGATGGCCTCTGCTACATGCATCATGACTGTGTTCCACCCGTTATTCATCGAGATGTGAAATCAAGTAACATTCTGTTGGATTCTGATTTCAACGCGAAAATTGCAGATTTTGGTCTTGCCAAGATGTTAGTCAAGCAAGGAGACCTTGCCACAATGTCAGCTGTTGCTGGCTCCTTTGGCTACATGGCTCCAGAATACGCACATTCCACAAGAGTGAATGGGAAGATTGACGTATACAGTTTCGGGGTTGTCCTGCTCGAGTTGACAACTGGTAGAGAACCCAATGAAGGTGATGAGCACACTTCTCTTGCCGAATGGGCGTGGCGACATGGTCAAGAAGGCAAACCTATCGCCGATGCTCTGGACCAGGACGTCAAAGAACCTTGTTACATGGATGAAATGAATGCCGTCTTCAAACTCGGCATAATGTGCACTGAGAAAAATCCTTCTAACAGGCCTTCTATGAGGGAGGTTCTGCATATCTTGGTTAATACCTGTCCTGCACCAGTTCGAAGGGAAAAGACCGAGTATGCTGCTGCTCCTCTCCTCAAGAATTCAAGCCGAGAGAGGGTTTTGGAAGATCAAGATGGTTTGGCAACGGATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010468 GO:0019222 GO:0022622 GO:0032501 GO:0032502 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

1014

Amino Acids

112.03

Weight (kDa)

5.76

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	28 - 67	7e-06	Leucine rich repeat N-terminal domain
LRR_8	PF13855	94 - 153	7.5e-10	Leucine rich repeat
LRR_14	PF23598	113 - 222	6e-12	Leucine-rich repeat region
Pkinase	PF00069	690 - 875	8.3e-33	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	691 - 875	2.6e-25	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25930
fragaria_vesca	FvH4_1g06180 FvH4_1g06180 FvH4_1g06220 FvH4_1g06260 FvH4_1g07450 FvH4_1g07450 FvH4_1g07450 FvH4_2g35260
malus_domestica	MD02G1066200.v1.1 MD02G1066300.v1.1 MD02G1066400.v1.1 MD08G1110500.v1.1 MD15G1196900.v1.1
prunus_persica	Prupe.1G444700_v2.0.a1 Prupe.7G218900_v2.0.a1 Prupe.7G219100_v2.0.a1 Prupe.7G219300_v2.0.a1 Prupe.7G219300_v2.0.a1 Prupe.7G219400_v2.0.a1 Prupe.7G219500_v2.0.a1
pyrus_communis	pycom02g05250 pycom08g08890 pycom08g09200 pycom15g08430 pycom15g17590
rosa_chinensis	RchiOBHm_Chr2g0091961 RchiOBHm_Chr6g0306681
rosa_laevigata	RLG00000010774 RLG00000016262 RLG00000016266
rosa_multiflora	Rmu_co7980064.1_g000001 Rmu_sc0005201.1_g000003 Rmu_sc0009216.1_g000004 Rmu_sc0014758.1_g000001 Rmu_sc0017125.1_g000005 Rmu_sc0017648.1_g000001 Rmu_sc0017649.1_g000001 Rmu_sc0017785.1_g000010 Rmu_sc0017785.1_g000011
rosa_roxburghii	Rroxscaffold_2G00149580 Rroxscaffold_7G00161550
rosa_rugosa	Rorug02G0022000 Rorug06G0351600
rosa_samantha	Rh2AG067500 Rh2BG066800 Rh2CG068100 Rh2DG066600 Rh6AG463900 Rh6BG437100 Rh6CG478000 Rh6DG464800
rosa_wichuraiana	Rw2G005350 Rw6G040410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	203
AasI	GACNNNNNNGTC	1 cut(s)	2804
AatII	GACGTC	1 cut(s)	2808
Acc36I	ACCTGC	1 cut(s)	203
AccB1I	GGYRCC	1 cut(s)	607
AccB7I	CCANNNNNTGG	1 cut(s)	1064
AccBSI	CCGCTC	1 cut(s)	756
AccI	GTMKAC	1 cut(s)	2667
AccII	CGCG	2 cut(s)	1922, 2528
AccIII	TCCGGA	1 cut(s)	1613
AciI	CCGC	5 cut(s)	257, 756, 1079, 1542, 1922
AclWI	GGATC	2 cut(s)	1999, 2101
AcoI	YGGCCR	1 cut(s)	182
AcsI	RAATTY	3 cut(s)	629, 676, 2986
AcyI	GRCGYC	2 cut(s)	608, 2805
AfaI	GTAC	4 cut(s)	362, 1048, 2115, 2303
AfiI	CCNNNNNNNGG	5 cut(s)	1064, 1099, 1874, 2720, 3001
AflII	CTTAAG	1 cut(s)	1909
AjnI	CCWGG	3 cut(s)	1092, 2391, 2799
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AleI	CACNNNNGTG	1 cut(s)	2645
Alw21I	GWGCWC	3 cut(s)	2228, 2733, 2867
Alw26I	GTCTC	4 cut(s)	339, 1187, 1899, 2568
Alw44I	GTGCAC	1 cut(s)	2863
AlwI	GGATC	2 cut(s)	1999, 2101
AlwNI	CAGNNNCTG	1 cut(s)	499
Ama87I	CYCGRG	2 cut(s)	316, 2690
Aor13HI	TCCGGA	1 cut(s)	1613
AoxI	GGCC	8 cut(s)	132, 182, 899, 994, 1544, 2399, 2437, 2888
ApaLI	GTGCAC	1 cut(s)	2863
ApoI	RAATTY	3 cut(s)	629, 676, 2986
Asp700I	GAANNNNTTC	2 cut(s)	527, 890
AspLEI	GCGC	2 cut(s)	610, 1922
AspS9I	GGNCC	8 cut(s)	133, 367, 899, 1544, 1616, 1663, 2160, 2797
AsuC2I	CCSGG	4 cut(s)	317, 318, 1117, 1261
AsuII	TTCGAA	2 cut(s)	2282, 2944
AvaI	CYCGRG	2 cut(s)	316, 2690
AvaII	GGWCC	5 cut(s)	367, 1616, 1663, 2160, 2797
AxyI	CCTNAGG	1 cut(s)	1482
BaeGI	GKGCMC	1 cut(s)	2867
BaeI	ACNNNNGTAYC	2 cut(s)	683, 716
BalI	TGGCCA	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	607
BanII	GRGCYC	1 cut(s)	2228
BarI	GAAGNNNNNNTAC	2 cut(s)	2202, 2234
BbsI	GAAGAC	6 cut(s)	659, 1413, 1508, 1731, 1948, 2836
Bbv12I	GWGCWC	3 cut(s)	2228, 2733, 2867
BbvCI	CCTCAGC	1 cut(s)	137
BccI	CCATC	7 cut(s)	956, 1561, 1654, 1982, 2322, 2429, 3014
BceAI	ACGGC	2 cut(s)	550, 2825
BcgI	CGANNNNNNTGC	4 cut(s)	2764, 2798, 2948, 2982
BciT130I	CCWGG	3 cut(s)	1094, 2393, 2801
BciVI	GTATCC	1 cut(s)	1964
BcnI	CCSGG	4 cut(s)	317, 318, 1117, 1261
BcoDI	GTCTC	4 cut(s)	339, 1187, 1899, 2568
BfaI	CTAG	5 cut(s)	165, 1272, 1860, 1898, 2321
BfmI	CTRYAG	3 cut(s)	175, 428, 546
BfoI	RGCGCY	1 cut(s)	611
BfrI	CTTAAG	1 cut(s)	1909
BfuAI	ACCTGC	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	1964
BglI	GCCNNNNNGGC	1 cut(s)	2750
BlpI	GCTNAGC	1 cut(s)	1538
BmcAI	AGTACT	2 cut(s)	362, 2303
Bme1390I	CCNGG	7 cut(s)	317, 318, 1094, 1117, 1261, 2393, 2801
Bme18I	GGWCC	5 cut(s)	367, 1616, 1663, 2160, 2797
BmeT110I	CYCGRG	2 cut(s)	316, 2690
BmgT120I	GGNCC	8 cut(s)	133, 367, 899, 1544, 1616, 1663, 2160, 2797
BmiI	GGNNCC	3 cut(s)	609, 2605, 2622
BmrFI	CCNGG	7 cut(s)	317, 318, 1094, 1117, 1261, 2393, 2801
BmrI	ACTGGG	1 cut(s)	1197
BmsI	GCATC	3 cut(s)	1438, 2461, 2779
BmuI	ACTGGG	1 cut(s)	1197
BoxI	GACNNNNGTC	1 cut(s)	1179
BpiI	GAAGAC	6 cut(s)	659, 1413, 1508, 1731, 1948, 2836
BpmI	CTGGAG	2 cut(s)	1041, 2607
Bpu10I	CCTNAGC	2 cut(s)	137, 423
Bpu1102I	GCTNAGC	1 cut(s)	1538
Bpu14I	TTCGAA	2 cut(s)	2282, 2944
BpuEI	CTTGAG	6 cut(s)	86, 593, 772, 825, 2353, 2966
BpuMI	CCSGG	4 cut(s)	317, 318, 1117, 1261
BsaHI	GRCGYC	2 cut(s)	608, 2805
BsaI	GGTCTC	2 cut(s)	1899, 2568
BsaJI	CCNNGG	4 cut(s)	298, 316, 611, 1260
BsaWI	WCCGGW	5 cut(s)	215, 461, 694, 1397, 1613
BsaXI	ACNNNNNCTCC	6 cut(s)	332, 362, 443, 473, 1039, 1069
Bsc4I	CCNNNNNNNGG	5 cut(s)	1064, 1099, 1874, 2720, 3001
Bse118I	RCCGGY	2 cut(s)	130, 446
Bse1I	ACTGG	9 cut(s)	526, 1192, 1759, 1833, 2009, 2271, 2402, 2707, 2939
Bse21I	CCTNAGG	1 cut(s)	1482
Bse3DI	GCAATG	1 cut(s)	2080
BseAI	TCCGGA	1 cut(s)	1613
BseBI	CCWGG	3 cut(s)	1094, 2393, 2801
BseDI	CCNNGG	4 cut(s)	298, 316, 611, 1260
BseGI	GGATG	5 cut(s)	51, 1993, 2351, 2833, 3040
BseLI	CCNNNNNNNGG	5 cut(s)	1064, 1099, 1874, 2720, 3001
BseMI	GCAATG	1 cut(s)	2080
BseNI	ACTGG	9 cut(s)	526, 1192, 1759, 1833, 2009, 2271, 2402, 2707, 2939
BseRI	GAGGAG	3 cut(s)	1739, 2964, 2969
BseSI	GKGCMC	1 cut(s)	2867
BsgI	GTGCAG	2 cut(s)	181, 2919
Bsh1236I	CGCG	2 cut(s)	1922, 2528
BshFI	GGCC	8 cut(s)	134, 184, 901, 996, 1546, 2401, 2439, 2890
BshNI	GGYRCC	1 cut(s)	607
BsiHKAI	GWGCWC	3 cut(s)	2228, 2733, 2867
BsiHKCI	CYCGRG	2 cut(s)	316, 2690
BslFI	GGGAC	3 cut(s)	55, 527, 1277
BslI	CCNNNNNNNGG	5 cut(s)	1064, 1099, 1874, 2720, 3001
BsmAI	GTCTC	4 cut(s)	339, 1187, 1899, 2568
BsmFI	GGGAC	3 cut(s)	55, 527, 1277
BsmI	GAATGC	4 cut(s)	854, 1072, 1291, 2842
BsnI	GGCC	8 cut(s)	134, 184, 901, 996, 1546, 2401, 2439, 2890
Bso31I	GGTCTC	2 cut(s)	1899, 2568
BsoBI	CYCGRG	2 cut(s)	316, 2690
Bsp119I	TTCGAA	2 cut(s)	2282, 2944
Bsp1286I	GDGCHC	3 cut(s)	2228, 2733, 2867
Bsp13I	TCCGGA	1 cut(s)	1613
Bsp143I	GATC	7 cut(s)	189, 1591, 1862, 1905, 1991, 2093, 3013
Bsp1720I	GCTNAGC	1 cut(s)	1538
Bsp19I	CCATGG	1 cut(s)	611
BspACI	CCGC	5 cut(s)	257, 756, 1079, 1542, 1922
BspANI	GGCC	8 cut(s)	134, 184, 901, 996, 1546, 2401, 2439, 2890
BspEI	TCCGGA	1 cut(s)	1613
BspFNI	CGCG	2 cut(s)	1922, 2528
BspHI	TCATGA	1 cut(s)	2455
BspLI	GGNNCC	3 cut(s)	609, 2605, 2622
BspMAI	CTGCAG	2 cut(s)	432, 550
BspMI	ACCTGC	1 cut(s)	203
BspPI	GGATC	2 cut(s)	1999, 2101
BspT104I	TTCGAA	2 cut(s)	2282, 2944
BspT107I	GGYRCC	1 cut(s)	607
BspTI	CTTAAG	1 cut(s)	1909
BspTNI	GGTCTC	2 cut(s)	1899, 2568
BsrBI	CCGCTC	1 cut(s)	756
BsrDI	GCAATG	1 cut(s)	2080
BsrFI	RCCGGY	2 cut(s)	130, 446
BsrI	ACTGG	9 cut(s)	526, 1192, 1759, 1833, 2009, 2271, 2402, 2707, 2939
BssAI	RCCGGY	2 cut(s)	130, 446
BssECI	CCNNGG	4 cut(s)	298, 316, 611, 1260
BssMI	GATC	7 cut(s)	189, 1591, 1862, 1905, 1991, 2093, 3013
BssNAI	GTATAC	1 cut(s)	2668
BssNI	GRCGYC	2 cut(s)	608, 2805
BssT1I	CCWWGG	2 cut(s)	298, 611
Bst1107I	GTATAC	1 cut(s)	2668
Bst2UI	CCWGG	3 cut(s)	1094, 2393, 2801
Bst4CI	ACNGT	7 cut(s)	176, 783, 1133, 1240, 2199, 2462, 2672
Bst6I	CTCTTC	3 cut(s)	41, 815, 1503
BstACI	GRCGYC	2 cut(s)	608, 2805
BstAFI	CTTAAG	1 cut(s)	1909
BstAPI	GCANNNNNTGC	1 cut(s)	2862
BstBI	TTCGAA	2 cut(s)	2282, 2944
BstC8I	GCNNGC	5 cut(s)	182, 448, 1544, 1828, 2602
BstDSI	CCRYGG	1 cut(s)	611
BstEII	GGTNACC	1 cut(s)	557
BstF5I	GGATG	5 cut(s)	51, 1993, 2351, 2833, 3040
BstFNI	CGCG	2 cut(s)	1922, 2528
BstH2I	RGCGCY	1 cut(s)	611
BstHHI	GCGC	2 cut(s)	610, 1922
BstKTI	GATC	7 cut(s)	192, 1594, 1865, 1908, 1994, 2096, 3016
BstMAI	GTCTC	4 cut(s)	339, 1187, 1899, 2568
BstMBI	GATC	7 cut(s)	189, 1591, 1862, 1905, 1991, 2093, 3013
BstNI	CCWGG	3 cut(s)	1094, 2393, 2801
BstNSI	RCATGY	2 cut(s)	2240, 2452
BstPAI	GACNNNNGTC	1 cut(s)	1179
BstPI	GGTNACC	1 cut(s)	557
BstSCI	CCNGG	7 cut(s)	315, 316, 1092, 1115, 1259, 2391, 2799
BstSFI	CTRYAG	3 cut(s)	175, 428, 546
BstSLI	GKGCMC	1 cut(s)	2867
BstUI	CGCG	2 cut(s)	1922, 2528
BstV2I	GAAGAC	6 cut(s)	659, 1413, 1508, 1731, 1948, 2836
BstXI	CCANNNNNNTGG	1 cut(s)	1685
BstZ17I	GTATAC	1 cut(s)	2668
Bsu36I	CCTNAGG	1 cut(s)	1482
BsuI	GTATCC	1 cut(s)	1964
BsuRI	GGCC	8 cut(s)	134, 184, 901, 996, 1546, 2401, 2439, 2890
BtgI	CCRYGG	1 cut(s)	611
BtsCI	GGATG	5 cut(s)	51, 1993, 2351, 2833, 3040
BtsI	GCAGTG	1 cut(s)	2427
BtsIMutI	CAGTG	7 cut(s)	172, 1185, 1752, 1840, 2278, 2427, 2865
BveI	ACCTGC	1 cut(s)	203
Cac8I	GCNNGC	5 cut(s)	182, 448, 1544, 1828, 2602
CaiI	CAGNNNCTG	1 cut(s)	499
CciI	TCATGA	1 cut(s)	2455
CfoI	GCGC	2 cut(s)	610, 1922
Cfr10I	RCCGGY	2 cut(s)	130, 446
Cfr13I	GGNCC	8 cut(s)	133, 367, 899, 1544, 1616, 1663, 2160, 2797
Cfr9I	CCCGGG	1 cut(s)	316
CseI	GACGC	2 cut(s)	442, 465
Csp6I	GTAC	4 cut(s)	361, 1047, 2114, 2302
CviQI	GTAC	4 cut(s)	361, 1047, 2114, 2302
DinI	GGCGCC	1 cut(s)	609
DpnI	GATC	7 cut(s)	191, 1593, 1864, 1907, 1993, 2095, 3015
DpnII	GATC	7 cut(s)	189, 1591, 1862, 1905, 1991, 2093, 3013
DraI	TTTAAA	1 cut(s)	1731
DrdI	GACNNNNNNGTC	1 cut(s)	2804
DseDI	GACNNNNNNGTC	1 cut(s)	2804
EaeI	YGGCCR	1 cut(s)	182
Eam1104I	CTCTTC	3 cut(s)	41, 815, 1503
EarI	CTCTTC	3 cut(s)	41, 815, 1503
EciI	GGCGGA	1 cut(s)	246
Ecl136II	GAGCTC	1 cut(s)	2226
Eco130I	CCWWGG	2 cut(s)	298, 611
Eco147I	AGGCCT	1 cut(s)	2890
Eco24I	GRGCYC	1 cut(s)	2228
Eco31I	GGTCTC	2 cut(s)	1899, 2568
Eco47I	GGWCC	5 cut(s)	367, 1616, 1663, 2160, 2797
Eco53kI	GAGCTC	1 cut(s)	2226
Eco81I	CCTNAGG	1 cut(s)	1482
Eco88I	CYCGRG	2 cut(s)	316, 2690
Eco91I	GGTNACC	1 cut(s)	557
EcoICRI	GAGCTC	1 cut(s)	2226
EcoO65I	GGTNACC	1 cut(s)	557
EcoRI	GAATTC	2 cut(s)	629, 2986
EcoRII	CCWGG	3 cut(s)	1092, 2391, 2799
EcoT14I	CCWWGG	2 cut(s)	298, 611
EcoT22I	ATGCAT	2 cut(s)	1291, 2454
EcoT38I	GRGCYC	1 cut(s)	2228
EgeI	GGCGCC	1 cut(s)	609
EheI	GGCGCC	1 cut(s)	609
ErhI	CCWWGG	2 cut(s)	298, 611
FalI	AAGNNNNNCTT	6 cut(s)	368, 400, 1448, 1480, 2562, 2594
FaqI	GGGAC	3 cut(s)	55, 527, 1277
FauI	CCCGC	2 cut(s)	749, 1535
FblI	GTMKAC	1 cut(s)	2667
FokI	GGATG	4 cut(s)	38, 2000, 2338, 2840
FriOI	GRGCYC	1 cut(s)	2228
FspBI	CTAG	5 cut(s)	165, 1272, 1860, 1898, 2321
GlaI	GCGC	2 cut(s)	609, 1921
GsuI	CTGGAG	2 cut(s)	1041, 2607
HaeII	RGCGCY	1 cut(s)	611
HaeIII	GGCC	8 cut(s)	134, 184, 901, 996, 1546, 2401, 2439, 2890
HgaI	GACGC	2 cut(s)	442, 465
HhaI	GCGC	2 cut(s)	610, 1922
Hin1I	GRCGYC	2 cut(s)	608, 2805
Hin6I	GCGC	2 cut(s)	608, 1920
HinP1I	GCGC	2 cut(s)	608, 1920
HincII	GTYRAC	3 cut(s)	936, 2064, 2697
HindII	GTYRAC	3 cut(s)	936, 2064, 2697
HindIII	AAGCTT	2 cut(s)	1151, 1798
Hpy166II	GTNNAC	7 cut(s)	238, 936, 2064, 2114, 2668, 2697, 2865
Hpy8I	GTNNAC	7 cut(s)	238, 936, 2064, 2114, 2668, 2697, 2865
HpyCH4III	ACNGT	7 cut(s)	176, 783, 1133, 1240, 2199, 2462, 2672
HpyCH4IV	ACGT	3 cut(s)	234, 2664, 2805
HpySE526I	ACGT	3 cut(s)	234, 2664, 2805
Hsp92I	GRCGYC	2 cut(s)	608, 2805
HspAI	GCGC	2 cut(s)	608, 1920
KasI	GGCGCC	1 cut(s)	607
Kpn2I	TCCGGA	1 cut(s)	1613
KroI	GCCGGC	1 cut(s)	446
KroNI	GCCGGC	1 cut(s)	448
Kzo9I	GATC	7 cut(s)	189, 1591, 1862, 1905, 1991, 2093, 3013
LmnI	GCTCC	6 cut(s)	353, 496, 2426, 2609, 2626, 2977
LweI	GCATC	3 cut(s)	1438, 2461, 2779
MaeI	CTAG	5 cut(s)	165, 1272, 1860, 1898, 2321
MaeII	ACGT	3 cut(s)	234, 2664, 2805
MaeIII	GTNAC	8 cut(s)	211, 269, 464, 557, 777, 1234, 2498, 2819
MalI	GATC	7 cut(s)	191, 1593, 1864, 1907, 1993, 2095, 3015
MbiI	CCGCTC	1 cut(s)	756
MboI	GATC	7 cut(s)	189, 1591, 1862, 1905, 1991, 2093, 3013
MhlI	GDGCHC	3 cut(s)	2228, 2733, 2867
MlsI	TGGCCA	1 cut(s)	184
MluNI	TGGCCA	1 cut(s)	184
Mly113I	GGCGCC	1 cut(s)	608
MlyI	GAGTC	3 cut(s)	707, 1522, 1583
MmeI	TCCRAC	5 cut(s)	591, 685, 1641, 2385, 2490
Mox20I	TGGCCA	1 cut(s)	184
Mph1103I	ATGCAT	2 cut(s)	1291, 2454
MroI	TCCGGA	1 cut(s)	1613
MroNI	GCCGGC	1 cut(s)	446
MroXI	GAANNNNTTC	2 cut(s)	527, 890
MscI	TGGCCA	1 cut(s)	184
MseI	TTAA	5 cut(s)	107, 1490, 1730, 1910, 2922
MslI	CAYNNNNRTG	3 cut(s)	2460, 2484, 2645
Msp20I	TGGCCA	1 cut(s)	184
MspA1I	CMGCKG	1 cut(s)	2594
MspCI	CTTAAG	1 cut(s)	1909
MspR9I	CCNGG	7 cut(s)	317, 318, 1094, 1117, 1261, 2393, 2801
Mva1269I	GAATGC	4 cut(s)	854, 1072, 1291, 2842
MvaI	CCWGG	3 cut(s)	1094, 2393, 2801
MvnI	CGCG	2 cut(s)	1922, 2528
NaeI	GCCGGC	1 cut(s)	448
NarI	GGCGCC	1 cut(s)	608
NciI	CCSGG	4 cut(s)	317, 318, 1117, 1261
NcoI	CCATGG	1 cut(s)	611
NdeII	GATC	7 cut(s)	189, 1591, 1862, 1905, 1991, 2093, 3013
NgoMIV	GCCGGC	1 cut(s)	446
NlaIV	GGNNCC	3 cut(s)	609, 2605, 2622
NmeAIII	GCCGAG	2 cut(s)	2832, 3020
NmuCI	GTSAC	3 cut(s)	269, 464, 1234
NsiI	ATGCAT	2 cut(s)	1291, 2454
NspI	RCATGY	2 cut(s)	2240, 2452
NspV	TTCGAA	2 cut(s)	2282, 2944
OliI	CACNNNNGTG	1 cut(s)	2645
PaeR7I	CTCGAG	1 cut(s)	2690
PagI	TCATGA	1 cut(s)	2455
PaqCI	CACCTGC	1 cut(s)	203
PceI	AGGCCT	1 cut(s)	2890
PctI	GAATGC	4 cut(s)	854, 1072, 1291, 2842
PdiI	GCCGGC	1 cut(s)	448
PdmI	GAANNNNTTC	2 cut(s)	527, 890
PfeI	GAWTC	8 cut(s)	664, 835, 979, 1405, 1531, 1693, 2122, 2513
PflFI	GACNNNGTC	1 cut(s)	2763
PflMI	CCANNNNNTGG	1 cut(s)	1064
PfoI	TCCNGGA	1 cut(s)	2391
PleI	GAGTC	3 cut(s)	706, 1521, 1582
PluTI	GGCGCC	1 cut(s)	611
PpsI	GAGTC	3 cut(s)	706, 1521, 1582
PshAI	GACNNNNGTC	1 cut(s)	1179
Psp124BI	GAGCTC	1 cut(s)	2228
Psp6I	CCWGG	3 cut(s)	1092, 2391, 2799
PspEI	GGTNACC	1 cut(s)	557
PspGI	CCWGG	3 cut(s)	1092, 2391, 2799
PspN4I	GGNNCC	3 cut(s)	609, 2605, 2622
PspPI	GGNCC	8 cut(s)	133, 367, 899, 1544, 1616, 1663, 2160, 2797
PspXI	VCTCGAGB	1 cut(s)	2690
PstI	CTGCAG	2 cut(s)	432, 550
PstNI	CAGNNNCTG	1 cut(s)	499
PsyI	GACNNNGTC	1 cut(s)	2763
PvuII	CAGCTG	1 cut(s)	2594
RsaI	GTAC	4 cut(s)	362, 1048, 2115, 2303
RsaNI	GTAC	4 cut(s)	361, 1047, 2114, 2302
RseI	CAYNNNNRTG	3 cut(s)	2460, 2484, 2645
SacI	GAGCTC	1 cut(s)	2228
SaqAI	TTAA	5 cut(s)	107, 1490, 1730, 1910, 2922
Sau3AI	GATC	7 cut(s)	189, 1591, 1862, 1905, 1991, 2093, 3013
Sau96I	GGNCC	8 cut(s)	133, 367, 899, 1544, 1616, 1663, 2160, 2797
ScaI	AGTACT	2 cut(s)	362, 2303
SchI	GAGTC	3 cut(s)	707, 1522, 1583
ScrFI	CCNGG	7 cut(s)	317, 318, 1094, 1117, 1261, 2393, 2801
SduI	GDGCHC	3 cut(s)	2228, 2733, 2867
SfaNI	GCATC	3 cut(s)	1438, 2461, 2779
SfcI	CTRYAG	3 cut(s)	175, 428, 546
SfoI	GGCGCC	1 cut(s)	609
Sfr274I	CTCGAG	1 cut(s)	2690
SfuI	TTCGAA	2 cut(s)	2282, 2944
SinI	GGWCC	5 cut(s)	367, 1616, 1663, 2160, 2797
SlaI	CTCGAG	1 cut(s)	2690
SmaI	CCCGGG	1 cut(s)	318
SmiMI	CAYNNNNRTG	3 cut(s)	2460, 2484, 2645
SmlI	CTYRAG	8 cut(s)	101, 572, 751, 840, 1909, 2368, 2690, 2981
SmoI	CTYRAG	8 cut(s)	101, 572, 751, 840, 1909, 2368, 2690, 2981
SseBI	AGGCCT	1 cut(s)	2890
SsiI	CCGC	5 cut(s)	257, 756, 1079, 1542, 1922
SspDI	GGCGCC	1 cut(s)	607
SspMI	CTAG	5 cut(s)	165, 1272, 1860, 1898, 2321
SstI	GAGCTC	1 cut(s)	2228
StuI	AGGCCT	1 cut(s)	2890
StyD4I	CCNGG	7 cut(s)	315, 316, 1092, 1115, 1259, 2391, 2799
StyI	CCWWGG	2 cut(s)	298, 611
TaaI	ACNGT	7 cut(s)	176, 783, 1133, 1240, 2199, 2462, 2672
TaiI	ACGT	3 cut(s)	237, 2667, 2808
TaqI	TCGA	9 cut(s)	411, 740, 873, 1511, 2233, 2282, 2482, 2691, 2944
TaqII	GACCGA	2 cut(s)	2340, 2972
TatI	WGTACW	2 cut(s)	360, 2301
TauI	GCSGC	1 cut(s)	1081
TfiI	GAWTC	8 cut(s)	664, 835, 979, 1405, 1531, 1693, 2122, 2513
Tru1I	TTAA	5 cut(s)	107, 1490, 1730, 1910, 2922
Tru9I	TTAA	5 cut(s)	107, 1490, 1730, 1910, 2922
TscAI	CASTG	7 cut(s)	179, 1192, 1759, 1840, 2278, 2427, 2872
TseFI	GTSAC	3 cut(s)	269, 464, 1234
Tsp45I	GTSAC	3 cut(s)	269, 464, 1234
TspGWI	ACGGA	1 cut(s)	199
TspMI	CCCGGG	1 cut(s)	316
TspRI	CASTG	7 cut(s)	179, 1192, 1759, 1840, 2278, 2427, 2872
Tth111I	GACNNNGTC	1 cut(s)	2763
Van91I	CCANNNNNTGG	1 cut(s)	1064
Vha464I	CTTAAG	1 cut(s)	1909
VneI	GTGCAC	1 cut(s)	2863
VpaK11BI	GGWCC	5 cut(s)	367, 1616, 1663, 2160, 2797
XapI	RAATTY	3 cut(s)	629, 676, 2986
XbaI	TCTAGA	1 cut(s)	1859
XceI	RCATGY	2 cut(s)	2240, 2452
XhoI	CTCGAG	1 cut(s)	2690
XmaI	CCCGGG	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	2667
XmnI	GAANNNNTTC	2 cut(s)	527, 890
XspI	CTAG	5 cut(s)	165, 1272, 1860, 1898, 2321
ZraI	GACGTC	1 cut(s)	2806
ZrmI	AGTACT	2 cut(s)	362, 2303
Zsp2I	ATGCAT	2 cut(s)	1291, 2454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.