Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001321

Physical Location & Seq

Genomic Coordinates Forward (+)

4987318 .. 4992727

Gene Structure 5410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG066600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3153 bp

ATGACTACACCCCTCCTCATCTTCTTCGTCTTCTTCATCCATGCAAACTCTCAGTCCCTTCAAGACAAGGAATTATCAGTCCTGCTTAAATTAAAGTCATATTGGCTATATCCACCAGCTCTCAGTCATTGGACTTCATCATCAAACTCTGGTTCCCACTGTAACTGGCCTGAGATCAACTGCACCGGAAACTCCGTCACCGTATTGACTCTCTACAACGTAAACCTCACCCGTGAAGTTCCACCCTTCATTTGTGACCTCAACAACCTCACACACCTTGACCTTGGTAATAACTACCTCCCGGGAGGTTTTCCTTTGTCTCTCTACAACTGCTCCAAGCTAGAGTATCTAGACCTCTCGCAAAACTACTTTGTGGGTACAATTCCTGATCACATCGACAGATTGCCTAAGCTTAAGACCCTCATCCTCGCCGGTAACAACTTCTCTGGTGCCATTCCGGCGTCTATTGGGAACTTACAGCAGCTGACTACTTTGCATATATACATGAACCAGCTCAACGGCTCTGTCCCAGCTGAAATAGGTAACCTCTCCAATCTTGAGGAACTCTGGCTCTCTTGGCTTCCCAAAATGGCGCCATGGAAGCTGCCTTTTAATTTCACCAAGTTGAAAAAGATGAAGATATTGAAGATACGCGAAGCAAATTTGATTGGGGAAATACCAGAATCTATTGGAGAATTGGAAGCACTTGAAGTATTGGATTTGGCGCGGAACAAGTTGAGCGGGAATATACCAAGCGGTGTGTTTCTGTTGAAGAATTTGAGCATTATATATCTGTTCAAGAACAGCCTTTCAGGGGAGATTCCTCTAGTGGTTGAAGCACTCAACTTGAGCATCATTGACATCTCTGAAAACAATCTCACAGGGCCGATACCAGAAGGTTTCGGAAACCTTAACAAGTTAACAGATATGAGTTTGTTCGAAAATCATATTTCAGGTGAGATTCCAGAGAGCATTGGCCGCCTGCCAAATCTTGTGATTTTCAAAATGTTCAACATGAACTTGTCAGGAACAATTCCTCCAGAGCTTGGAAAGCATTCGCTGCTTGAAGATTTCCAGGTTTCAGTGAATAGGCTTACCGGAAAGCTGCCAGACGGCTTGTGTAAAAATGGTAAGCTTGTGGCAGTTGTTGCTTATGAGAATAGTCTCACTGGGGAGCTACCAAGCTCTCTAGGAAATTGTGATAGTCTGCTGATAGTTACGGTTTATGATAACATGTTATCTGGGAACATTCCTAGTGGTATGTGGAGTGCACTGAATTTGAGTTATGTGATGATGAGCAACAATTCGTTCACGGGTGAGCTTCCTGAGAAGATGTCATATAATCTTCAAAGGCTGGAAATCGGAGATAACAAGTTTTCAGGTCAGATTCCAAGAGGGGTGTCTTCCTGTAAGAATCTGCAAGTTTTTGATGCTGGTAACAACCTCTTCAATGGTAGTATTCCTCAGGAATTAACTACTCTTCCGAGCTTGACGACTCTGACCCTGCATCAGAATCAGCTTAGCGGGCCCCTTCCATCAGATATTGTATCATGGAAGTCACTAAACACTCTTGATCTGCGTAGAAATCAACTCTCCGGACCAATTCCAGAGATACTTGGTGGTTTGCCCGCCCTTACTGAATTGGACCTTTCTGAAAACCAGTTTTCAGGCCAAATTCCAAATCAACTTGGCCATCTGAAACTCAATGAGTTCAACCTCTCTTCAAATCTCCTCTCTGGCGAGATCCCAATTTCATTTGAAAACTCTGCGTATGAGAGAAGCTTCTTGAACAACACCGGTCTCTGTGCAAGCACCAGTGGTGTGAATCTAAATATATGCTCTCAATCGCCAAAGTCCAGCAAGATTTCAATTCGGTCTCTTGCTTTGATCTTAAGTCTAAGCGCGGTGTTGTTCGTGTTGGTTTTGTCCTTATTAATCTTCTTTGTTAGAGGTTACTTGAGGAGGAAGGATGGATCAGACGCAGCTGACTGGAAGCTCGTTGCATTTCAGAGGTTGAATTTCACCATCTCACAAATCTTGCCAGGGTTGATAGAAAGCAATGCGATTGGAAGTGGTGGATCAGGGAGGGTCTATCGTGTACCTGTGAATCGTACAGGTGATGTTGTAGCTGCGAAGAGGATTTGGACCAACAAGAAGATCATGGAGGAGAGGCTTGAAAAAGAGTTTCATGCAGAAGTCAAGATACTGAGCTCAATTCGACATGCTAACATAGTGAAGCTAATGTGCTGCATATCCAGTGAGACTTCGAAACTTCTTGTATATGAGTACTTAGACAATCGAAGCCTAGATCGATGGTTGCACAAGAAAAACAGGCCATACCTATCCAACCTCTCAAGTTCAGTCAATCATGTTGTTCTGGACTGGCCTAAGAGGTTGCAGATTGCAGTGGGAGCTGCCAAGGGCCTCTGCTATATGCATCATGACTGTGTTCCACCCGTTGTGCATCGAGACGTGAAATCAAGTAACATTTTATTGGACTCTGATTTCAACGCAAAAATAGCAGATTTTGGTCTGGCCAAAATGTTGGTCAAGCAAGGAGACCTTGCCACAATGTCAGCTGTTGCTGGTTCCTTTGGCTACATGGCTCCAGAATATGCACATACCAGAAGAGTGAATGAAAAGATCGATGTATATAGTTTTGGGGTCATCCTGCTGGAGTTGGCAACTGGTAGGGAACCCAATGAAGGTGATGAAAACACTTCTCTCGCCGAATGGGCGTGGCGTCGTGCTCAAGAAGGCAAACCTATCGCCAGTGCTCTGGACCAGGACGTCAAAGAACCCAGTTACTTGGATGAAATGTGCGCTGTTTTCAGACTCGGCATCATGTGCACCGAGACACTTCCTACTAATAGGCCTTCTATGAAGGAGGTTCTGCAGATCTTGGTTCGAACTTGTCCTCCACCAGTTCGCAGGGAAAAGACTGAATATGCCGCTGCTCCTCTCCTCAAGAACTCGAGGCGCGAGAGAGTTTTGGAAGATCAAGATGGTTTTTGGTCAGTAGCTAACCAGGGGATCATGGGCAGTATCCCACATTCGTTGCCAAACTTCTGTCAGCCGTCCGATTTCAATCGAACGGTGACTGACCAAATGACCCCTGGTAACGGGACTCAAGCCCGAAGTGGACACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010468 GO:0019222 GO:0022622 GO:0032501 GO:0032502 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

1050

Amino Acids

116.27

Weight (kDa)

6.5

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	89 - 148	1.5e-08	Leucine rich repeat
LRR_14	PF23598	109 - 217	1.4e-12	Leucine-rich repeat region
LRR_14	PF23598	207 - 267	9.6e-07	Leucine-rich repeat region
LRR_8	PF13855	520 - 578	6.7e-07	Leucine rich repeat
Pkinase	PF00069	686 - 966	4.3e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	687 - 967	1.2e-39	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25930
fragaria_vesca	FvH4_1g06180 FvH4_1g06180 FvH4_1g06220 FvH4_1g06260 FvH4_1g07450 FvH4_1g07450 FvH4_1g07450 FvH4_2g35260
malus_domestica	MD02G1066200.v1.1 MD02G1066300.v1.1 MD02G1066400.v1.1 MD08G1110500.v1.1 MD15G1196900.v1.1
prunus_persica	Prupe.1G444700_v2.0.a1 Prupe.7G218900_v2.0.a1 Prupe.7G219100_v2.0.a1 Prupe.7G219300_v2.0.a1 Prupe.7G219300_v2.0.a1 Prupe.7G219400_v2.0.a1 Prupe.7G219500_v2.0.a1
pyrus_communis	pycom02g05250 pycom08g08890 pycom08g09200 pycom15g08430 pycom15g17590
rosa_chinensis	RchiOBHm_Chr2g0091961 RchiOBHm_Chr6g0306681
rosa_laevigata	RLG00000010774 RLG00000016262 RLG00000016266
rosa_multiflora	Rmu_co7980064.1_g000001 Rmu_sc0005201.1_g000003 Rmu_sc0009216.1_g000004 Rmu_sc0014758.1_g000001 Rmu_sc0017125.1_g000005 Rmu_sc0017648.1_g000001 Rmu_sc0017649.1_g000001 Rmu_sc0017785.1_g000010 Rmu_sc0017785.1_g000011
rosa_roxburghii	Rroxscaffold_2G00149580 Rroxscaffold_7G00161550
rosa_rugosa	Rorug02G0022000 Rorug06G0351600
rosa_samantha	Rh2AG067500 Rh2BG066800 Rh2CG068100 Rh2DG066600 Rh6AG463900 Rh6BG437100 Rh6CG478000 Rh6DG464800
rosa_wichuraiana	Rw2G005350 Rw6G040410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2789
AatII	GACGTC	1 cut(s)	2793
AccB1I	GGYRCC	2 cut(s)	449, 592
AccB7I	CCANNNNNTGG	1 cut(s)	1046
AccBSI	CCGCTC	1 cut(s)	741
AccII	CGCG	4 cut(s)	654, 727, 1904, 2982
AccIII	TCCGGA	1 cut(s)	1595
AciI	CCGC	8 cut(s)	727, 741, 756, 979, 1524, 1629, 1904, 2952
AclWI	GGATC	4 cut(s)	1738, 1981, 2086, 3041
AcoI	YGGCCR	3 cut(s)	976, 1690, 2535
AcsI	RAATTY	5 cut(s)	661, 775, 1276, 1674, 2017
AcyI	GRCGYC	4 cut(s)	461, 593, 2743, 2790
AfaI	GTAC	4 cut(s)	379, 2100, 2113, 2288
AfiI	CCNNNNNNNGG	4 cut(s)	814, 1046, 2705, 3122
AflII	CTTAAG	2 cut(s)	413, 1891
AflIII	ACRYGT	1 cut(s)	1233
AgeI	ACCGGT	1 cut(s)	1796
AjiI	CACGTC	1 cut(s)	2473
AjnI	CCWGG	5 cut(s)	1074, 2041, 2784, 3027, 3115
AloI	GAACNNNNNNTCC	4 cut(s)	1021, 1053, 2902, 2934
Alw21I	GWGCWC	5 cut(s)	1273, 2213, 2752, 2779, 2852
Alw26I	GTCTC	8 cut(s)	324, 1169, 1805, 1881, 2255, 2463, 2553, 2849
Alw44I	GTGCAC	2 cut(s)	1269, 2848
AlwI	GGATC	4 cut(s)	1738, 1981, 2086, 3041
AlwNI	CAGNNNCTG	1 cut(s)	484
Ama87I	CYCGRG	2 cut(s)	301, 2974
Aor13HI	TCCGGA	1 cut(s)	1595
ApaI	GGGCCC	1 cut(s)	1530
ApaLI	GTGCAC	2 cut(s)	1269, 2848
ApeKI	GCWGC	9 cut(s)	481, 604, 1060, 1105, 1982, 2129, 2247, 2414, 2954
ApoI	RAATTY	5 cut(s)	661, 775, 1276, 1674, 2017
ArsI	GACNNNNNNTTYG	4 cut(s)	38, 70, 2532, 2564
AseI	ATTAAT	1 cut(s)	1934
AsiGI	ACCGGT	1 cut(s)	1796
Asp700I	GAANNNNTTC	1 cut(s)	1054
AspLEI	GCGC	5 cut(s)	595, 727, 1904, 2825, 2982
AspS9I	GGNCC	8 cut(s)	884, 1526, 1527, 1598, 1645, 2145, 2422, 2782
AsuC2I	CCSGG	2 cut(s)	302, 303
AsuHPI	GGTGA	9 cut(s)	190, 220, 610, 968, 1328, 2014, 2129, 2720, 3109
AsuII	TTCGAA	3 cut(s)	939, 2267, 2908
AvaI	CYCGRG	2 cut(s)	301, 2974
AvaII	GGWCC	4 cut(s)	1598, 1645, 2145, 2782
AxyI	CCTNAGG	1 cut(s)	1464
BaeGI	GKGCMC	3 cut(s)	1273, 1530, 2852
BalI	TGGCCA	2 cut(s)	1692, 2537
BanI	GGYRCC	2 cut(s)	449, 592
BanII	GRGCYC	2 cut(s)	1530, 2213
BarI	GAAGNNNNNNTAC	2 cut(s)	2187, 2219
BbsI	GAAGAC	2 cut(s)	22, 1395
Bbv12I	GWGCWC	5 cut(s)	1273, 2213, 2752, 2779, 2852
BbvI	GCAGC	9 cut(s)	493, 591, 1047, 1092, 1994, 2116, 2234, 2401, 2941
BccI	CCATC	6 cut(s)	1543, 1701, 1964, 2033, 2307, 2999
BceAI	ACGGC	3 cut(s)	535, 1129, 3061
BcgI	CGANNNNNNTGC	2 cut(s)	2749, 2783
BciT130I	CCWGG	5 cut(s)	1076, 2043, 2786, 3029, 3117
BciVI	GTATCC	1 cut(s)	3056
BclI	TGATCA	1 cut(s)	388
BcnI	CCSGG	2 cut(s)	302, 303
BcoDI	GTCTC	8 cut(s)	324, 1169, 1805, 1881, 2255, 2463, 2553, 2849
BfaI	CTAG	6 cut(s)	341, 350, 827, 1190, 1254, 2306
BfmI	CTRYAG	1 cut(s)	2894
BfoI	RGCGCY	1 cut(s)	596
BfrI	CTTAAG	2 cut(s)	413, 1891
BfuI	GTATCC	1 cut(s)	3056
BglI	GCCNNNNNGGC	2 cut(s)	458, 2735
BglII	AGATCT	1 cut(s)	2898
BlpI	GCTNAGC	1 cut(s)	1520
BmcAI	AGTACT	1 cut(s)	2288
Bme1390I	CCNGG	7 cut(s)	302, 303, 1076, 2043, 2786, 3029, 3117
Bme18I	GGWCC	4 cut(s)	1598, 1645, 2145, 2782
BmeT110I	CYCGRG	2 cut(s)	301, 2974
BmgBI	CACGTC	1 cut(s)	2473
BmgT120I	GGNCC	8 cut(s)	884, 1526, 1527, 1598, 1645, 2145, 2422, 2782
BmiI	GGNNCC	8 cut(s)	154, 451, 594, 1528, 1529, 2590, 2607, 2697
BmrFI	CCNGG	7 cut(s)	302, 303, 1076, 2043, 2786, 3029, 3117
BmrI	ACTGGG	2 cut(s)	1179, 2796
BmsI	GCATC	6 cut(s)	861, 1420, 1516, 2446, 2473, 2850
BmuI	ACTGGG	2 cut(s)	1179, 2796
BpiI	GAAGAC	2 cut(s)	22, 1395
BpmI	CTGGAG	3 cut(s)	1023, 2592, 2696
Bpu10I	CCTNAGC	1 cut(s)	408
Bpu1102I	GCTNAGC	1 cut(s)	1520
Bpu14I	TTCGAA	3 cut(s)	939, 2267, 2908
BpuEI	CTTGAG	7 cut(s)	578, 868, 1978, 2338, 2736, 2951, 3114
BpuMI	CCSGG	2 cut(s)	302, 303
Bsa29I	ATCGAT	2 cut(s)	2311, 2646
BsaBI	GATNNNNATC	1 cut(s)	3087
BsaHI	GRCGYC	4 cut(s)	461, 593, 2743, 2790
BsaI	GGTCTC	3 cut(s)	1805, 1881, 2553
BsaJI	CCNNGG	7 cut(s)	283, 301, 596, 2042, 2418, 3028, 3115
BsaWI	WCCGGW	4 cut(s)	185, 1097, 1595, 1796
BsaXI	ACNNNNNCTCC	6 cut(s)	317, 347, 1021, 1051, 2902, 2932
Bsc4I	CCNNNNNNNGG	4 cut(s)	814, 1046, 2705, 3122
Bse118I	RCCGGY	2 cut(s)	431, 1796
Bse21I	CCTNAGG	1 cut(s)	1464
Bse3DI	GCAATG	1 cut(s)	2065
Bse8I	GATNNNNATC	1 cut(s)	3087
BseAI	TCCGGA	1 cut(s)	1595
BseBI	CCWGG	5 cut(s)	1076, 2043, 2786, 3029, 3117
BseCI	ATCGAT	2 cut(s)	2311, 2646
BseDI	CCNNGG	7 cut(s)	283, 301, 596, 2042, 2418, 3028, 3115
BseGI	GGATG	5 cut(s)	36, 423, 1975, 2667, 2818
BseJI	GATNNNNATC	1 cut(s)	3087
BseLI	CCNNNNNNNGG	4 cut(s)	814, 1046, 2705, 3122
BseMI	GCAATG	1 cut(s)	2065
BseMII	CTCAG	6 cut(s)	65, 136, 162, 1317, 1478, 2198
BseRI	GAGGAG	6 cut(s)	5, 1721, 1975, 2180, 2949, 2954
BseSI	GKGCMC	3 cut(s)	1273, 1530, 2852
BseXI	GCAGC	9 cut(s)	493, 591, 1047, 1092, 1994, 2116, 2234, 2401, 2941
BseYI	CCCAGC	1 cut(s)	529
BsgI	GTGCAG	1 cut(s)	166
Bsh1236I	CGCG	4 cut(s)	654, 727, 1904, 2982
BshNI	GGYRCC	2 cut(s)	449, 592
BshTI	ACCGGT	1 cut(s)	1796
BshVI	ATCGAT	2 cut(s)	2311, 2646
BsiHKAI	GWGCWC	5 cut(s)	1273, 2213, 2752, 2779, 2852
BsiHKCI	CYCGRG	2 cut(s)	301, 2974
BsiSI	CCGG	7 cut(s)	186, 302, 432, 458, 1098, 1596, 1797
BslFI	GGGAC	3 cut(s)	40, 512, 3139
BslI	CCNNNNNNNGG	4 cut(s)	814, 1046, 2705, 3122
BsmAI	GTCTC	8 cut(s)	324, 1169, 1805, 1881, 2255, 2463, 2553, 2849
BsmBI	CGTCTC	1 cut(s)	2463
BsmFI	GGGAC	3 cut(s)	40, 512, 3139
BsmI	GAATGC	1 cut(s)	1054
Bso31I	GGTCTC	3 cut(s)	1805, 1881, 2553
BsoBI	CYCGRG	2 cut(s)	301, 2974
Bsp119I	TTCGAA	3 cut(s)	939, 2267, 2908
Bsp120I	GGGCCC	1 cut(s)	1526
Bsp1286I	GDGCHC	6 cut(s)	1273, 1530, 2213, 2752, 2779, 2852
Bsp13I	TCCGGA	1 cut(s)	1595
Bsp1720I	GCTNAGC	1 cut(s)	1520
Bsp19I	CCATGG	1 cut(s)	596
BspACI	CCGC	8 cut(s)	727, 741, 756, 979, 1524, 1629, 1904, 2952
BspCNI	CTCAG	6 cut(s)	64, 135, 163, 1318, 1477, 2199
BspDI	ATCGAT	2 cut(s)	2311, 2646
BspEI	TCCGGA	1 cut(s)	1595
BspFNI	CGCG	4 cut(s)	654, 727, 1904, 2982
BspHI	TCATGA	1 cut(s)	2440
BspLI	GGNNCC	8 cut(s)	154, 451, 594, 1528, 1529, 2590, 2607, 2697
BspMAI	CTGCAG	1 cut(s)	2898
BspPI	GGATC	4 cut(s)	1738, 1981, 2086, 3041
BspT104I	TTCGAA	3 cut(s)	939, 2267, 2908
BspT107I	GGYRCC	2 cut(s)	449, 592
BspTI	CTTAAG	2 cut(s)	413, 1891
BspTNI	GGTCTC	3 cut(s)	1805, 1881, 2553
BsrBI	CCGCTC	1 cut(s)	741
BsrDI	GCAATG	1 cut(s)	2065
BsrFI	RCCGGY	2 cut(s)	431, 1796
BssAI	RCCGGY	2 cut(s)	431, 1796
BssECI	CCNNGG	7 cut(s)	283, 301, 596, 2042, 2418, 3028, 3115
BssNI	GRCGYC	4 cut(s)	461, 593, 2743, 2790
BssT1I	CCWWGG	3 cut(s)	283, 596, 2418
Bst2UI	CCWGG	5 cut(s)	1076, 2043, 2786, 3029, 3117
Bst4CI	ACNGT	5 cut(s)	161, 202, 1222, 2447, 3097
Bst6I	CTCTTC	5 cut(s)	1451, 1485, 1726, 2129, 2623
BstACI	GRCGYC	4 cut(s)	461, 593, 2743, 2790
BstAFI	CTTAAG	2 cut(s)	413, 1891
BstAPI	GCANNNNNTGC	3 cut(s)	1060, 1148, 2847
BstBI	TTCGAA	3 cut(s)	939, 2267, 2908
BstC8I	GCNNGC	4 cut(s)	983, 1526, 1629, 1810
BstDSI	CCRYGG	1 cut(s)	596
BstEII	GGTNACC	1 cut(s)	542
BstF5I	GGATG	5 cut(s)	36, 423, 1975, 2667, 2818
BstFNI	CGCG	4 cut(s)	654, 727, 1904, 2982
BstH2I	RGCGCY	1 cut(s)	596
BstHHI	GCGC	5 cut(s)	595, 727, 1904, 2825, 2982
BstMAI	GTCTC	8 cut(s)	324, 1169, 1805, 1881, 2255, 2463, 2553, 2849
BstNI	CCWGG	5 cut(s)	1076, 2043, 2786, 3029, 3117
BstNSI	RCATGY	2 cut(s)	1237, 2225
BstPI	GGTNACC	1 cut(s)	542
BstSCI	CCNGG	7 cut(s)	300, 301, 1074, 2041, 2784, 3027, 3115
BstSFI	CTRYAG	1 cut(s)	2894
BstSLI	GKGCMC	3 cut(s)	1273, 1530, 2852
BstUI	CGCG	4 cut(s)	654, 727, 1904, 2982
BstV1I	GCAGC	9 cut(s)	493, 591, 1047, 1092, 1994, 2116, 2234, 2401, 2941
BstV2I	GAAGAC	2 cut(s)	22, 1395
BstX2I	RGATCY	2 cut(s)	1743, 2898
BstXI	CCANNNNNNTGG	3 cut(s)	2545, 2779, 2809
BstYI	RGATCY	2 cut(s)	1743, 2898
Bsu15I	ATCGAT	2 cut(s)	2311, 2646
Bsu36I	CCTNAGG	1 cut(s)	1464
BsuI	GTATCC	1 cut(s)	3056
BsuTUI	ATCGAT	2 cut(s)	2311, 2646
BtgI	CCRYGG	1 cut(s)	596
BtrI	CACGTC	1 cut(s)	2473
BtsCI	GGATG	5 cut(s)	36, 423, 1975, 2667, 2818
BtsI	GCAGTG	1 cut(s)	2412
BtsIMutI	CAGTG	8 cut(s)	157, 1089, 1167, 1271, 1822, 2263, 2412, 2779
Cac8I	GCNNGC	4 cut(s)	983, 1526, 1629, 1810
CaiI	CAGNNNCTG	1 cut(s)	484
CciI	TCATGA	1 cut(s)	2440
CfoI	GCGC	5 cut(s)	595, 727, 1904, 2825, 2982
Cfr10I	RCCGGY	2 cut(s)	431, 1796
Cfr13I	GGNCC	8 cut(s)	884, 1526, 1527, 1598, 1645, 2145, 2422, 2782
Cfr9I	CCCGGG	1 cut(s)	301
ClaI	ATCGAT	2 cut(s)	2311, 2646
CseI	GACGC	3 cut(s)	450, 1988, 2732
Csp6I	GTAC	4 cut(s)	378, 2099, 2112, 2287
CspAI	ACCGGT	1 cut(s)	1796
CspCI	CAANNNNNGTGG	2 cut(s)	3039, 3074
CviQI	GTAC	4 cut(s)	378, 2099, 2112, 2287
DinI	GGCGCC	1 cut(s)	594
DrdI	GACNNNNNNGTC	1 cut(s)	2789
DseDI	GACNNNNNNGTC	1 cut(s)	2789
EaeI	YGGCCR	3 cut(s)	976, 1690, 2535
Eam1104I	CTCTTC	5 cut(s)	1451, 1485, 1726, 2129, 2623
EarI	CTCTTC	5 cut(s)	1451, 1485, 1726, 2129, 2623
Ecl136II	GAGCTC	1 cut(s)	2211
Eco130I	CCWWGG	3 cut(s)	283, 596, 2418
Eco147I	AGGCCT	1 cut(s)	2875
Eco24I	GRGCYC	2 cut(s)	1530, 2213
Eco31I	GGTCTC	3 cut(s)	1805, 1881, 2553
Eco47I	GGWCC	4 cut(s)	1598, 1645, 2145, 2782
Eco53kI	GAGCTC	1 cut(s)	2211
Eco81I	CCTNAGG	1 cut(s)	1464
Eco88I	CYCGRG	2 cut(s)	301, 2974
Eco91I	GGTNACC	1 cut(s)	542
EcoICRI	GAGCTC	1 cut(s)	2211
EcoO109I	RGGNCCY	2 cut(s)	1527, 2422
EcoO65I	GGTNACC	1 cut(s)	542
EcoRII	CCWGG	5 cut(s)	1074, 2041, 2784, 3027, 3115
EcoT14I	CCWWGG	3 cut(s)	283, 596, 2418
EcoT22I	ATGCAT	1 cut(s)	2439
EcoT38I	GRGCYC	2 cut(s)	1530, 2213
EgeI	GGCGCC	1 cut(s)	594
EheI	GGCGCC	1 cut(s)	594
ErhI	CCWWGG	3 cut(s)	283, 596, 2418
Esp3I	CGTCTC	1 cut(s)	2463
FalI	AAGNNNNNCTT	2 cut(s)	2547, 2579
FaqI	GGGAC	3 cut(s)	40, 512, 3139
FauI	CCCGC	3 cut(s)	734, 1517, 1636
FbaI	TGATCA	1 cut(s)	388
FokI	GGATG	5 cut(s)	23, 410, 1982, 2654, 2825
FriOI	GRGCYC	2 cut(s)	1530, 2213
FspBI	CTAG	6 cut(s)	341, 350, 827, 1190, 1254, 2306
GlaI	GCGC	5 cut(s)	594, 726, 1903, 2824, 2981
GsaI	CCCAGC	1 cut(s)	533
GsuI	CTGGAG	3 cut(s)	1023, 2592, 2696
HaeII	RGCGCY	1 cut(s)	596
HapII	CCGG	7 cut(s)	186, 302, 432, 458, 1098, 1596, 1797
HgaI	GACGC	3 cut(s)	450, 1988, 2732
HhaI	GCGC	5 cut(s)	595, 727, 1904, 2825, 2982
Hin1I	GRCGYC	4 cut(s)	461, 593, 2743, 2790
Hin6I	GCGC	5 cut(s)	593, 725, 1902, 2823, 2980
HinP1I	GCGC	5 cut(s)	593, 725, 1902, 2823, 2980
HincII	GTYRAC	1 cut(s)	921
HindII	GTYRAC	1 cut(s)	921
HindIII	AAGCTT	3 cut(s)	410, 1133, 1780
HpaI	GTTAAC	1 cut(s)	921
HpaII	CCGG	7 cut(s)	186, 302, 432, 458, 1098, 1596, 1797
HphI	GGTGA	9 cut(s)	190, 220, 610, 968, 1328, 2014, 2129, 2720, 3109
Hpy166II	GTNNAC	7 cut(s)	223, 921, 1271, 1311, 2099, 2850, 3143
Hpy8I	GTNNAC	7 cut(s)	223, 921, 1271, 1311, 2099, 2850, 3143
Hpy99I	CGWCG	1 cut(s)	2748
HpyAV	CCTTC	9 cut(s)	68, 256, 890, 1541, 1960, 2699, 2750, 2878, 2886
HpyCH4III	ACNGT	5 cut(s)	161, 202, 1222, 2447, 3097
HpyCH4IV	ACGT	3 cut(s)	219, 2472, 2790
HpySE526I	ACGT	3 cut(s)	219, 2472, 2790
Hsp92I	GRCGYC	4 cut(s)	461, 593, 2743, 2790
HspAI	GCGC	5 cut(s)	593, 725, 1902, 2823, 2980
KasI	GGCGCC	1 cut(s)	592
Kpn2I	TCCGGA	1 cut(s)	1595
Ksp22I	TGATCA	1 cut(s)	388
KspAI	GTTAAC	1 cut(s)	921
LmnI	GCTCC	5 cut(s)	338, 1174, 2411, 2611, 2962
Lsp1109I	GCAGC	9 cut(s)	493, 591, 1047, 1092, 1994, 2116, 2234, 2401, 2941
LweI	GCATC	6 cut(s)	861, 1420, 1516, 2446, 2473, 2850
MaeI	CTAG	6 cut(s)	341, 350, 827, 1190, 1254, 2306
MaeII	ACGT	3 cut(s)	219, 2472, 2790
MbiI	CCGCTC	1 cut(s)	741
MflI	RGATCY	2 cut(s)	1743, 2898
MhlI	GDGCHC	6 cut(s)	1273, 1530, 2213, 2752, 2779, 2852
MlsI	TGGCCA	2 cut(s)	1692, 2537
MluNI	TGGCCA	2 cut(s)	1692, 2537
Mly113I	GGCGCC	1 cut(s)	593
MlyI	GAGTC	5 cut(s)	202, 1489, 2492, 2829, 3121
MmeI	TCCRAC	1 cut(s)	2370
Mox20I	TGGCCA	2 cut(s)	1692, 2537
Mph1103I	ATGCAT	1 cut(s)	2439
MroI	TCCGGA	1 cut(s)	1595
MroXI	GAANNNNTTC	1 cut(s)	1054
MscI	TGGCCA	2 cut(s)	1692, 2537
MseI	TTAA	9 cut(s)	87, 92, 414, 612, 912, 920, 1472, 1892, 1934
MslI	CAYNNNNRTG	1 cut(s)	2445
Msp20I	TGGCCA	2 cut(s)	1692, 2537
MspA1I	CMGCKG	5 cut(s)	484, 533, 1985, 2579, 2954
MspCI	CTTAAG	2 cut(s)	413, 1891
MspI	CCGG	7 cut(s)	186, 302, 432, 458, 1098, 1596, 1797
MspR9I	CCNGG	7 cut(s)	302, 303, 1076, 2043, 2786, 3029, 3117
Mva1269I	GAATGC	1 cut(s)	1054
MvaI	CCWGG	5 cut(s)	1076, 2043, 2786, 3029, 3117
MvnI	CGCG	4 cut(s)	654, 727, 1904, 2982
NarI	GGCGCC	1 cut(s)	593
NciI	CCSGG	2 cut(s)	302, 303
NcoI	CCATGG	1 cut(s)	596
NlaIV	GGNNCC	8 cut(s)	154, 451, 594, 1528, 1529, 2590, 2607, 2697
NmeAIII	GCCGAG	1 cut(s)	2817
NmuCI	GTSAC	4 cut(s)	196, 254, 1557, 3097
NsiI	ATGCAT	1 cut(s)	2439
NspI	RCATGY	2 cut(s)	1237, 2225
NspV	TTCGAA	3 cut(s)	939, 2267, 2908
PaeR7I	CTCGAG	1 cut(s)	2974
PagI	TCATGA	1 cut(s)	2440
PceI	AGGCCT	1 cut(s)	2875
PciI	ACATGT	1 cut(s)	1233
PctI	GAATGC	1 cut(s)	1054
PdmI	GAANNNNTTC	1 cut(s)	1054
PfeI	GAWTC	8 cut(s)	683, 820, 961, 1387, 1414, 1513, 1825, 2107
PflMI	CCANNNNNTGG	1 cut(s)	1046
PinAI	ACCGGT	1 cut(s)	1796
PleI	GAGTC	5 cut(s)	202, 1489, 2492, 2829, 3121
PluTI	GGCGCC	1 cut(s)	596
PpsI	GAGTC	5 cut(s)	202, 1489, 2492, 2829, 3121
PscI	ACATGT	1 cut(s)	1233
PshBI	ATTAAT	1 cut(s)	1934
Psp124BI	GAGCTC	1 cut(s)	2213
Psp6I	CCWGG	5 cut(s)	1074, 2041, 2784, 3027, 3115
PspEI	GGTNACC	1 cut(s)	542
PspFI	CCCAGC	1 cut(s)	529
PspGI	CCWGG	5 cut(s)	1074, 2041, 2784, 3027, 3115
PspN4I	GGNNCC	8 cut(s)	154, 451, 594, 1528, 1529, 2590, 2607, 2697
PspOMI	GGGCCC	1 cut(s)	1526
PspPI	GGNCC	8 cut(s)	884, 1526, 1527, 1598, 1645, 2145, 2422, 2782
PspXI	VCTCGAGB	1 cut(s)	2974
PstI	CTGCAG	1 cut(s)	2898
PstNI	CAGNNNCTG	1 cut(s)	484
PsuI	RGATCY	2 cut(s)	1743, 2898
PvuII	CAGCTG	4 cut(s)	484, 533, 1985, 2579
RsaI	GTAC	4 cut(s)	379, 2100, 2113, 2288
RsaNI	GTAC	4 cut(s)	378, 2099, 2112, 2287
RseI	CAYNNNNRTG	1 cut(s)	2445
SacI	GAGCTC	1 cut(s)	2213
SaqAI	TTAA	9 cut(s)	87, 92, 414, 612, 912, 920, 1472, 1892, 1934
Sau96I	GGNCC	8 cut(s)	884, 1526, 1527, 1598, 1645, 2145, 2422, 2782
ScaI	AGTACT	1 cut(s)	2288
SchI	GAGTC	5 cut(s)	202, 1489, 2492, 2829, 3121
ScrFI	CCNGG	7 cut(s)	302, 303, 1076, 2043, 2786, 3029, 3117
SduI	GDGCHC	6 cut(s)	1273, 1530, 2213, 2752, 2779, 2852
SfaNI	GCATC	6 cut(s)	861, 1420, 1516, 2446, 2473, 2850
SfcI	CTRYAG	1 cut(s)	2894
SfoI	GGCGCC	1 cut(s)	594
Sfr274I	CTCGAG	1 cut(s)	2974
SfuI	TTCGAA	3 cut(s)	939, 2267, 2908
SinI	GGWCC	4 cut(s)	1598, 1645, 2145, 2782
SlaI	CTCGAG	1 cut(s)	2974
SmaI	CCCGGG	1 cut(s)	303
SmiMI	CAYNNNNRTG	1 cut(s)	2445
SseBI	AGGCCT	1 cut(s)	2875
SsiI	CCGC	8 cut(s)	727, 741, 756, 979, 1524, 1629, 1904, 2952
SspDI	GGCGCC	1 cut(s)	592
SspMI	CTAG	6 cut(s)	341, 350, 827, 1190, 1254, 2306
SstI	GAGCTC	1 cut(s)	2213
StuI	AGGCCT	1 cut(s)	2875
StyD4I	CCNGG	7 cut(s)	300, 301, 1074, 2041, 2784, 3027, 3115
StyI	CCWWGG	3 cut(s)	283, 596, 2418
TaaI	ACNGT	5 cut(s)	161, 202, 1222, 2447, 3097
TaiI	ACGT	3 cut(s)	222, 2475, 2793
TaqII	GACCGA	1 cut(s)	1863
TatI	WGTACW	1 cut(s)	2286
TauI	GCSGC	2 cut(s)	981, 2954
TfiI	GAWTC	8 cut(s)	683, 820, 961, 1387, 1414, 1513, 1825, 2107
Tru1I	TTAA	9 cut(s)	87, 92, 414, 612, 912, 920, 1472, 1892, 1934
Tru9I	TTAA	9 cut(s)	87, 92, 414, 612, 912, 920, 1472, 1892, 1934
TscAI	CASTG	8 cut(s)	164, 1089, 1174, 1278, 1822, 2263, 2412, 2779
TseFI	GTSAC	4 cut(s)	196, 254, 1557, 3097
TseI	GCWGC	9 cut(s)	481, 604, 1060, 1105, 1982, 2129, 2247, 2414, 2954
Tsp45I	GTSAC	4 cut(s)	196, 254, 1557, 3097
TspGWI	ACGGA	1 cut(s)	184
TspMI	CCCGGG	1 cut(s)	301
TspRI	CASTG	8 cut(s)	164, 1089, 1174, 1278, 1822, 2263, 2412, 2779
Van91I	CCANNNNNTGG	1 cut(s)	1046
Vha464I	CTTAAG	2 cut(s)	413, 1891
VneI	GTGCAC	2 cut(s)	1269, 2848
VpaK11BI	GGWCC	4 cut(s)	1598, 1645, 2145, 2782
VspI	ATTAAT	1 cut(s)	1934
XapI	RAATTY	5 cut(s)	661, 775, 1276, 1674, 2017
XbaI	TCTAGA	1 cut(s)	349
XceI	RCATGY	2 cut(s)	1237, 2225
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3113
XhoI	CTCGAG	1 cut(s)	2974
XmaI	CCCGGG	1 cut(s)	301
XmnI	GAANNNNTTC	1 cut(s)	1054
XspI	CTAG	6 cut(s)	341, 350, 827, 1190, 1254, 2306
ZraI	GACGTC	1 cut(s)	2791
ZrmI	AGTACT	1 cut(s)	2288
Zsp2I	ATGCAT	1 cut(s)	2439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.