Rmu_sc0017649.1_g000001
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017649.1
OG0001321
Physical Location & Seq
Forward (+)
1 .. 1430
1430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017649.1_g000001.1.cds

Sequence Viewer

Length: 1303 bp
agctttctgggaagattccagatgtgtttgataaccttgcttatgaaaacagtttcttgaacaattcaaatctatgtgctaatagtccaattctaaacctttccagttgctacaccaaaatcaatagttcccacaagttgtcctccagagtcctcgccatgatcttagtcctctccattgttgtgtttctagttactgttctattgacatttttcgtggtcagagactaccggaggaagaagcgtggccgtgacttggcaacatggaagcttacctcattccagaggttggatttcactgagttcaatgtcttgacaaacttgacagatactaatctcattggaagtggaggctcagggaaggtttatcgagttagtactaactgcccacgtgaatttgtcgcggttaaaaggatttggaacagaaaggaactagatcagaagctcgagaaagaattcaatgctgaggttgagatactgggcaccattcgtcattcaaacattgtaaagttgctgtgctgcatttctagtgagaattcgaagcttctggtgtatgaatacatggagaatcatagcctagataagtggcttcatggaaagaagacaagaataatggcgggaatgactttggctcaacatgttgttttggactggccaaagagactggagattgcaataggggcagcacaaggcttgtactacatgcaccatgagtgctctcctccagtaattcatagagatgtcaagtccagcaatatcttgttggactcagaattcaaagctcgcattgcagatttcgggctggccaagatcttggccaagcatggagaaggacaaccccacactatgtctgttattgcaggctcttttggttatattgccccagaatatgcttatacgacaaaaatcaatgaaaagatcgatgtatacagctttggagtagtacttctagaactaacaacaggcagagaacctaatagtggaggcgaatataccaacctagcagaatgggcatggcagctatttggcgaaggaaagaacattaatgaggccctggatgaggatataaagaaaacatgttacttggaagagatggctactgtctttaaactgggacttatctgcactagcacactaccttcaactcggccttccatgaaagaagttctgcacattcttcgcgggtatggtttgtcagatggttctgatgtcaaaaaggtggggagtgagtttgacattgcgcctctccttaacactgcgacttacctttctagttacaagcgcagtaaaaaggtagatgatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

433

Amino Acids

48.75

Weight (kDa)

8.59

Isoelectric Point (pI)

33.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 481
AccB7I CCANNNNNTGG 1 cut(s) 288
AccI GTMKAC 1 cut(s) 926
AccII CGCG 2 cut(s) 403, 1181
AciI CCGC 3 cut(s) 403, 616, 1181
AcoI YGGCCR 4 cut(s) 246, 652, 803, 815
AcsI RAATTY 4 cut(s) 394, 454, 534, 772
AcvI CACGTG 1 cut(s) 391
AfaI GTAC 3 cut(s) 378, 697, 944
AfiI CCNNNNNNNGG 4 cut(s) 255, 288, 979, 1059
AflIII ACRYGT 2 cut(s) 636, 1075
AgsI TTSAA 7 cut(s) 60, 68, 306, 459, 497, 777, 1142
AjnI CCWGG 1 cut(s) 1052
AluBI AGCT 7 cut(s) 3, 270, 444, 543, 781, 932, 1020
AluI AGCT 7 cut(s) 3, 270, 444, 543, 781, 932, 1020
Alw21I GWGCWC 1 cut(s) 718
Alw26I GTCTC 2 cut(s) 218, 654
Ama87I CYCGRG 1 cut(s) 445
AoxI GGCC 6 cut(s) 246, 652, 803, 815, 1049, 1147
ApeKI GCWGC 3 cut(s) 518, 682, 1017
ApoI RAATTY 4 cut(s) 394, 454, 534, 772
AseI ATTAAT 1 cut(s) 1043
Asp700I GAANNNNTTC 1 cut(s) 454
AspLEI GCGC 2 cut(s) 1242, 1283
AspS9I GGNCC 1 cut(s) 1050
AsuII TTCGAA 1 cut(s) 538
AvaI CYCGRG 1 cut(s) 445
BaeGI GKGCMC 1 cut(s) 484
BalI TGGCCA 3 cut(s) 654, 805, 817
BanI GGYRCC 1 cut(s) 481
BbrPI CACGTG 1 cut(s) 391
BbsI GAAGAC 1 cut(s) 607
Bbv12I GWGCWC 1 cut(s) 718
BbvCI CCTCAGC 1 cut(s) 464
BbvI GCAGC 3 cut(s) 505, 694, 1029
BccI CCATC 2 cut(s) 1086, 1192
BceAI ACGGC 1 cut(s) 233
BcgI CGANNNNNNTGC 2 cut(s) 1159, 1193
BciT130I CCWGG 1 cut(s) 1054
BcoDI GTCTC 2 cut(s) 218, 654
BfaI CTAG 8 cut(s) 190, 433, 527, 577, 949, 1000, 1127, 1271
BglII AGATCT 1 cut(s) 809
BisI GCNGC 3 cut(s) 519, 683, 1018
BlsI GCNGC 3 cut(s) 520, 684, 1019
BmcAI AGTACT 2 cut(s) 378, 944
Bme1390I CCNGG 1 cut(s) 1054
BmeT110I CYCGRG 1 cut(s) 445
BmgT120I GGNCC 1 cut(s) 1050
BmiI GGNNCC 1 cut(s) 483
BmrFI CCNGG 1 cut(s) 1054
BmrI ACTGGG 2 cut(s) 487, 1120
BmuI ACTGGG 2 cut(s) 487, 1120
BpiI GAAGAC 1 cut(s) 607
BpmI CTGGAG 3 cut(s) 129, 685, 707
Bpu10I CCTNAGC 2 cut(s) 354, 464
Bpu14I TTCGAA 1 cut(s) 538
Bsa29I ATCGAT 1 cut(s) 920
BsaAI YACGTR 1 cut(s) 391
BsaBI GATNNNNATC 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 1052
BsaWI WCCGGW 1 cut(s) 230
Bsc4I CCNNNNNNNGG 4 cut(s) 255, 288, 979, 1059
Bse1I ACTGG 6 cut(s) 104, 482, 655, 668, 724, 1115
Bse3DI GCAATG 2 cut(s) 785, 1235
Bse8I GATNNNNATC 1 cut(s) 332
BseBI CCWGG 1 cut(s) 1054
BseCI ATCGAT 1 cut(s) 920
BseDI CCNNGG 1 cut(s) 1052
BseGI GGATG 1 cut(s) 1062
BseJI GATNNNNATC 1 cut(s) 332
BseLI CCNNNNNNNGG 4 cut(s) 255, 288, 979, 1059
BseMI GCAATG 2 cut(s) 785, 1235
BseMII CTCAG 4 cut(s) 290, 368, 455, 782
BseNI ACTGG 6 cut(s) 104, 482, 655, 668, 724, 1115
BseRI GAGGAG 1 cut(s) 710
BseSI GKGCMC 1 cut(s) 484
BseXI GCAGC 3 cut(s) 505, 694, 1029
BsgI GTGCAG 2 cut(s) 1107, 1153
Bsh1236I CGCG 2 cut(s) 403, 1181
BshFI GGCC 6 cut(s) 248, 654, 805, 817, 1051, 1149
BshNI GGYRCC 1 cut(s) 481
BshVI ATCGAT 1 cut(s) 920
BsiHKAI GWGCWC 1 cut(s) 718
BsiHKCI CYCGRG 1 cut(s) 445
BsiSI CCGG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 1127
BslI CCNNNNNNNGG 4 cut(s) 255, 288, 979, 1059
BsmAI GTCTC 2 cut(s) 218, 654
BsmFI GGGAC 1 cut(s) 1127
BsnI GGCC 6 cut(s) 248, 654, 805, 817, 1051, 1149
BsoBI CYCGRG 1 cut(s) 445
Bsp119I TTCGAA 1 cut(s) 538
Bsp1286I GDGCHC 2 cut(s) 484, 718
Bsp143I GATC 4 cut(s) 161, 435, 809, 917
BspACI CCGC 3 cut(s) 403, 616, 1181
BspANI GGCC 6 cut(s) 248, 654, 805, 817, 1051, 1149
BspCNI CTCAG 4 cut(s) 291, 367, 456, 781
BspDI ATCGAT 1 cut(s) 920
BspFNI CGCG 2 cut(s) 403, 1181
BspLI GGNNCC 1 cut(s) 483
BspT104I TTCGAA 1 cut(s) 538
BspT107I GGYRCC 1 cut(s) 481
BsrDI GCAATG 2 cut(s) 785, 1235
BsrI ACTGG 6 cut(s) 104, 482, 655, 668, 724, 1115
BssECI CCNNGG 1 cut(s) 1052
BssMI GATC 4 cut(s) 161, 435, 809, 917
BssNAI GTATAC 1 cut(s) 927
Bst1107I GTATAC 1 cut(s) 927
Bst2UI CCWGG 1 cut(s) 1054
Bst4CI ACNGT 3 cut(s) 52, 198, 1101
Bst6I CTCTTC 1 cut(s) 1082
BstBAI YACGTR 1 cut(s) 391
BstBI TTCGAA 1 cut(s) 538
BstC8I GCNNGC 3 cut(s) 783, 803, 861
BstDEI CTNAG 5 cut(s) 165, 299, 354, 464, 768
BstENI CCTNNNNNAGG 1 cut(s) 1057
BstF5I GGATG 1 cut(s) 1062
BstFNI CGCG 2 cut(s) 403, 1181
BstHHI GCGC 2 cut(s) 1242, 1283
BstKTI GATC 4 cut(s) 164, 438, 812, 920
BstMAI GTCTC 2 cut(s) 218, 654
BstMBI GATC 4 cut(s) 161, 435, 809, 917
BstMWI GCNNNNNNNGC 3 cut(s) 679, 787, 1009
BstNI CCWGG 1 cut(s) 1054
BstNSI RCATGY 3 cut(s) 640, 705, 1079
BstSCI CCNGG 1 cut(s) 1052
BstSLI GKGCMC 1 cut(s) 484
BstUI CGCG 2 cut(s) 403, 1181
BstV1I GCAGC 3 cut(s) 505, 694, 1029
BstV2I GAAGAC 1 cut(s) 607
BstX2I RGATCY 1 cut(s) 809
BstXI CCANNNNNNTGG 1 cut(s) 813
BstYI RGATCY 1 cut(s) 809
BstZ17I GTATAC 1 cut(s) 927
Bsu15I ATCGAT 1 cut(s) 920
BsuRI GGCC 6 cut(s) 248, 654, 805, 817, 1051, 1149
BsuTUI ATCGAT 1 cut(s) 920
BtsCI GGATG 1 cut(s) 1062
BtsI GCAGTG 1 cut(s) 1253
BtsIMutI CAGTG 2 cut(s) 296, 1253
Cac8I GCNNGC 3 cut(s) 783, 803, 861
CfoI GCGC 2 cut(s) 1242, 1283
Cfr13I GGNCC 1 cut(s) 1050
ClaI ATCGAT 1 cut(s) 920
Csp6I GTAC 3 cut(s) 377, 696, 943
CviQI GTAC 3 cut(s) 377, 696, 943
DdeI CTNAG 5 cut(s) 165, 299, 354, 464, 768
DpnI GATC 4 cut(s) 163, 437, 811, 919
DpnII GATC 4 cut(s) 161, 435, 809, 917
DraI TTTAAA 1 cut(s) 1107
EaeI YGGCCR 4 cut(s) 246, 652, 803, 815
Eam1104I CTCTTC 1 cut(s) 1082
EarI CTCTTC 1 cut(s) 1082
Eco72I CACGTG 1 cut(s) 391
Eco88I CYCGRG 1 cut(s) 445
EcoNI CCTNNNNNAGG 1 cut(s) 1057
EcoO109I RGGNCCY 1 cut(s) 1050
EcoRI GAATTC 3 cut(s) 454, 534, 772
EcoRII CCWGG 1 cut(s) 1052
FaqI GGGAC 1 cut(s) 1127
FauI CCCGC 2 cut(s) 609, 1174
FblI GTMKAC 1 cut(s) 926
Fnu4HI GCNGC 3 cut(s) 519, 683, 1018
FokI GGATG 1 cut(s) 1069
Fsp4HI GCNGC 3 cut(s) 519, 683, 1018
FspBI CTAG 8 cut(s) 190, 433, 527, 577, 949, 1000, 1127, 1271
GlaI GCGC 2 cut(s) 1241, 1282
GluI GCNGC 3 cut(s) 519, 683, 1018
GsuI CTGGAG 3 cut(s) 129, 685, 707
HaeIII GGCC 6 cut(s) 248, 654, 805, 817, 1051, 1149
HapII CCGG 1 cut(s) 231
HhaI GCGC 2 cut(s) 1242, 1283
Hin6I GCGC 2 cut(s) 1240, 1281
HinP1I GCGC 2 cut(s) 1240, 1281
HindIII AAGCTT 2 cut(s) 268, 541
HinfI GANTC 4 cut(s) 15, 149, 567, 766
HpaII CCGG 1 cut(s) 231
Hpy166II GTNNAC 1 cut(s) 927
Hpy188I TCNGA 5 cut(s) 223, 440, 771, 1197, 1206
Hpy188III TCNNGA 7 cut(s) 19, 57, 146, 282, 312, 447, 949
Hpy8I GTNNAC 1 cut(s) 927
HpyAV CCTTC 5 cut(s) 354, 823, 1024, 1148, 1160
HpyCH4III ACNGT 3 cut(s) 52, 198, 1101
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 7 cut(s) 521, 673, 705, 790, 859, 1124, 1170
HpyF10VI GCNNNNNNNGC 3 cut(s) 679, 787, 1009
HpyF3I CTNAG 5 cut(s) 165, 299, 354, 464, 768
HpySE526I ACGT 1 cut(s) 390
HspAI GCGC 2 cut(s) 1240, 1281
Kzo9I GATC 4 cut(s) 161, 435, 809, 917
Lsp1109I GCAGC 3 cut(s) 505, 694, 1029
MaeI CTAG 8 cut(s) 190, 433, 527, 577, 949, 1000, 1127, 1271
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 4 cut(s) 192, 250, 1078, 1273
MalI GATC 4 cut(s) 163, 437, 811, 919
MboI GATC 4 cut(s) 161, 435, 809, 917
MboII GAAGA 5 cut(s) 24, 249, 612, 1099, 1168
MflI RGATCY 1 cut(s) 809
MhlI GDGCHC 2 cut(s) 484, 718
MlsI TGGCCA 3 cut(s) 654, 805, 817
MluCI AATT 7 cut(s) 63, 89, 394, 454, 534, 728, 772
MluNI TGGCCA 3 cut(s) 654, 805, 817
MlyI GAGTC 2 cut(s) 158, 760
MmeI TCCRAC 2 cut(s) 269, 743
Mox20I TGGCCA 3 cut(s) 654, 805, 817
MroXI GAANNNNTTC 1 cut(s) 454
MscI TGGCCA 3 cut(s) 654, 805, 817
MseI TTAA 4 cut(s) 407, 1043, 1106, 1250
MslI CAYNNNNRTG 2 cut(s) 181, 737
Msp20I TGGCCA 3 cut(s) 654, 805, 817
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 1 cut(s) 1054
MvaI CCWGG 1 cut(s) 1054
MvnI CGCG 2 cut(s) 403, 1181
MwoI GCNNNNNNNGC 3 cut(s) 679, 787, 1009
NdeII GATC 4 cut(s) 161, 435, 809, 917
NlaIV GGNNCC 1 cut(s) 483
NmeAIII GCCGAG 1 cut(s) 1125
NmuCI GTSAC 1 cut(s) 250
NspI RCATGY 3 cut(s) 640, 705, 1079
NspV TTCGAA 1 cut(s) 538
PaeR7I CTCGAG 1 cut(s) 445
PciI ACATGT 2 cut(s) 636, 1075
PdmI GAANNNNTTC 1 cut(s) 454
PfeI GAWTC 2 cut(s) 15, 567
PflMI CCANNNNNTGG 1 cut(s) 288
PkrI GCNGC 3 cut(s) 520, 684, 1019
PleI GAGTC 2 cut(s) 157, 760
PmaCI CACGTG 1 cut(s) 391
PmlI CACGTG 1 cut(s) 391
PpsI GAGTC 2 cut(s) 157, 760
Ppu21I YACGTR 1 cut(s) 391
PscI ACATGT 2 cut(s) 636, 1075
PshBI ATTAAT 1 cut(s) 1043
Psp6I CCWGG 1 cut(s) 1052
PspCI CACGTG 1 cut(s) 391
PspGI CCWGG 1 cut(s) 1052
PspN4I GGNNCC 1 cut(s) 483
PspPI GGNCC 1 cut(s) 1050
PsuI RGATCY 1 cut(s) 809
RsaI GTAC 3 cut(s) 378, 697, 944
RsaNI GTAC 3 cut(s) 377, 696, 943
RseI CAYNNNNRTG 2 cut(s) 181, 737
SaqAI TTAA 4 cut(s) 407, 1043, 1106, 1250
SatI GCNGC 3 cut(s) 519, 683, 1018
Sau3AI GATC 4 cut(s) 161, 435, 809, 917
Sau96I GGNCC 1 cut(s) 1050
ScaI AGTACT 2 cut(s) 378, 944
SchI GAGTC 2 cut(s) 158, 760
ScrFI CCNGG 1 cut(s) 1054
SduI GDGCHC 2 cut(s) 484, 718
Sfr274I CTCGAG 1 cut(s) 445
SfuI TTCGAA 1 cut(s) 538
SlaI CTCGAG 1 cut(s) 445
SmiMI CAYNNNNRTG 2 cut(s) 181, 737
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
Sse9I AATT 7 cut(s) 63, 89, 394, 454, 534, 728, 772
SsiI CCGC 3 cut(s) 403, 616, 1181
SspMI CTAG 8 cut(s) 190, 433, 527, 577, 949, 1000, 1127, 1271
StyD4I CCNGG 1 cut(s) 1052
TaaI ACNGT 3 cut(s) 52, 198, 1101
TaiI ACGT 1 cut(s) 393
TaqI TCGA 4 cut(s) 369, 446, 538, 920
TasI AATT 7 cut(s) 63, 89, 394, 454, 534, 728, 772
TatI WGTACW 3 cut(s) 376, 695, 942
TfiI GAWTC 2 cut(s) 15, 567
Tru1I TTAA 4 cut(s) 407, 1043, 1106, 1250
Tru9I TTAA 4 cut(s) 407, 1043, 1106, 1250
TscAI CASTG 2 cut(s) 303, 1260
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 3 cut(s) 518, 682, 1017
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 6 cut(s) 59, 569, 580, 721, 926, 1171
TspRI CASTG 2 cut(s) 303, 1260
Van91I CCANNNNNTGG 1 cut(s) 288
VspI ATTAAT 1 cut(s) 1043
XagI CCTNNNNNAGG 1 cut(s) 1057
XapI RAATTY 4 cut(s) 394, 454, 534, 772
XbaI TCTAGA 1 cut(s) 948
XceI RCATGY 3 cut(s) 640, 705, 1079
XhoI CTCGAG 1 cut(s) 445
XmiI GTMKAC 1 cut(s) 926
XmnI GAANNNNTTC 1 cut(s) 454
XspI CTAG 8 cut(s) 190, 433, 527, 577, 949, 1000, 1127, 1271
ZrmI AGTACT 2 cut(s) 378, 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.