Rmu_sc0017785.1_g000010
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017785.1
OG0001321
Physical Location & Seq
Reverse (-)
33683 .. 35732
2050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017785.1_g000010.1.cds

Sequence Viewer

Length: 1923 bp
atgttgcaagcagttattgccttctctaacaaacttagtggagagttgcctgaagggcttgggaattgtcgtgctttgcgtacggttcaagttcaagacaacagtttttcgggtgagctgcccgagggactttggacttcactgaatctttcagccctgatgatgagcaacaattcgttttcggggcagcttccgagcacaaggctagcttcgaatctgtctagactggaaatcagcaacaataaattctctggtgaaattccagttcaagtttcatcttggcaaactttggttgtttttaaggcaagtgggaatctgttttcagggaaaatcccagtagaatttaccagtctttcacagctgaacactttgtcactcgatgggaatcgattttcgggtgaattaccaacgcagatcattgcgtggggatcattgactagtctagatctctcaagaaatgagctttcaggctacattccaacagctattggttctttacctgacctcctctacttggatttgtcaggaaacaaattctcaggtcaaatcccatctgaattaggccacttgaggctcaactccctcaacttgtcttcaaacgagctttctgggaagattccagatgtgtttgataaccttgcttatgaaaacagtttcttgaacaattcaaatctatgtgctagtagtccaattctaaaccttcccagttgctacaccaaaatcaatagttcccacaagttgtcctccagagtcctcgccatgatcttagtcctctccattgttgtgtttctagttactgttctattgacatttttcgtggtcagagactaccggaggaagaagcgtggccgtgacttggcaacatggaagcttacctcattccagaggttggatttcactgagttcaatgtcttgacaaacttgacagatactaatctcattggaagtggaggctcagggaaggtttatcgagttagtactaactgcccacgtgaatttgtcgcggttaaaaggatttggaacagaaaggaactagatcagaagctcgagaaagaattcaatgctgaggttgagatactgggcaccattcgtcattcaaacattgtaaagttgctgtgctgcatttctagtgagaattcgaagcttctggtgtatgaatacatggagaatcatagcctagataagtggcttcatggaaagaagacaagaataatggcgggaatgactttggctcaacatgttgttttggactggccaaagagactggagattgcaataggggcagcacaaggcttgtactacatgcaccatgagtgctctcccccagtaattcatagagatgtcaagtccagcaatatcttgttggactcagaattcaaagctcgcattgcagatttcgggctggccaagatcttggccaagcatggagaaggacaaccccacactatgtctgttattgcaggctcttttggttatattgccccagaatatgcttatacgacaaaaatcaatgaaaagatcgatgtatacagctttggagtagtacttctagaactaacaacaggcagagaacctaatagtggaggcgaatataccaacctagcagaatgggcatggcagctatttggcgaaggaaagaacattaatgaggccctggatgaggatataaagaaaacatgttacttggaagagatggctactgtctttaaactgggacttatctgcactagcacactaccttcaactcggccttccatgaaagaagttctgcacattcttcgcgggtatggtttgtcagatggttctgatgtcaaaaaggtggggagtgagtttgacattgcgcctctccttaacactgcgacttacctttctagttacaagcgcagtaaaaaggtagatgatagtatagtttacagtgtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

640

Amino Acids

71.01

Weight (kDa)

7.58

Isoelectric Point (pI)

33.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1082
AccB7I CCANNNNNTGG 1 cut(s) 889
AccI GTMKAC 1 cut(s) 1527
AccII CGCG 2 cut(s) 1004, 1782
AciI CCGC 3 cut(s) 1004, 1217, 1782
AclWI GGATC 1 cut(s) 436
AcoI YGGCCR 4 cut(s) 847, 1253, 1404, 1416
AcsI RAATTY 8 cut(s) 245, 258, 341, 533, 995, 1055, 1135, 1373
AcuI CTGAAG 1 cut(s) 72
AcvI CACGTG 1 cut(s) 992
AfaI GTAC 4 cut(s) 82, 979, 1298, 1545
AfiI CCNNNNNNNGG 5 cut(s) 514, 856, 889, 1580, 1660
AflIII ACRYGT 2 cut(s) 1237, 1676
AhlI ACTAGT 1 cut(s) 437
AjnI CCWGG 1 cut(s) 1653
Alw21I GWGCWC 2 cut(s) 200, 1319
Alw26I GTCTC 2 cut(s) 819, 1255
AlwI GGATC 1 cut(s) 436
Ama87I CYCGRG 2 cut(s) 122, 1046
AoxI GGCC 7 cut(s) 562, 847, 1253, 1404, 1416, 1650, 1748
ApeKI GCWGC 5 cut(s) 118, 187, 1119, 1283, 1618
ApoI RAATTY 8 cut(s) 245, 258, 341, 533, 995, 1055, 1135, 1373
AseI ATTAAT 1 cut(s) 1644
Asp700I GAANNNNTTC 1 cut(s) 1055
AspLEI GCGC 2 cut(s) 1843, 1884
AspS9I GGNCC 1 cut(s) 1651
AsuHPI GGTGA 3 cut(s) 125, 266, 410
AsuII TTCGAA 2 cut(s) 212, 1139
AsuNHI GCTAGC 1 cut(s) 205
AvaI CYCGRG 2 cut(s) 122, 1046
BaeGI GKGCMC 1 cut(s) 1085
BalI TGGCCA 3 cut(s) 1255, 1406, 1418
BanI GGYRCC 1 cut(s) 1082
BbrPI CACGTG 1 cut(s) 992
BbsI GAAGAC 2 cut(s) 585, 1208
Bbv12I GWGCWC 2 cut(s) 200, 1319
BbvCI CCTCAGC 1 cut(s) 1065
BbvI GCAGC 5 cut(s) 105, 199, 1106, 1295, 1630
BccI CCATC 4 cut(s) 374, 559, 1687, 1793
BceAI ACGGC 1 cut(s) 834
BcgI CGANNNNNNTGC 2 cut(s) 1760, 1794
BciT130I CCWGG 1 cut(s) 1655
BcoDI GTCTC 2 cut(s) 819, 1255
BcuI ACTAGT 1 cut(s) 437
BglI GCCNNNNNGGC 1 cut(s) 55
BglII AGATCT 2 cut(s) 445, 1410
BisI GCNGC 5 cut(s) 119, 188, 1120, 1284, 1619
BlsI GCNGC 5 cut(s) 120, 189, 1121, 1285, 1620
BmcAI AGTACT 2 cut(s) 979, 1545
Bme1390I CCNGG 1 cut(s) 1655
BmeT110I CYCGRG 2 cut(s) 122, 1046
BmgT120I GGNCC 1 cut(s) 1651
BmiI GGNNCC 1 cut(s) 1084
BmrFI CCNGG 1 cut(s) 1655
BmrI ACTGGG 5 cut(s) 329, 699, 1088, 1319, 1721
BmtI GCTAGC 1 cut(s) 209
BmuI ACTGGG 5 cut(s) 329, 699, 1088, 1319, 1721
BpiI GAAGAC 2 cut(s) 585, 1208
BpmI CTGGAG 2 cut(s) 730, 1286
Bpu10I CCTNAGC 2 cut(s) 955, 1065
Bpu14I TTCGAA 2 cut(s) 212, 1139
BpuEI CTTGAG 2 cut(s) 436, 589
Bsa29I ATCGAT 2 cut(s) 388, 1521
BsaAI YACGTR 1 cut(s) 992
BsaBI GATNNNNATC 2 cut(s) 384, 933
BsaJI CCNNGG 2 cut(s) 123, 1653
BsaWI WCCGGW 1 cut(s) 831
BsaXI ACNNNNNCTCC 2 cut(s) 489, 519
Bsc4I CCNNNNNNNGG 5 cut(s) 514, 856, 889, 1580, 1660
Bse3DI GCAATG 3 cut(s) 417, 1386, 1836
Bse8I GATNNNNATC 2 cut(s) 384, 933
BseBI CCWGG 1 cut(s) 1655
BseCI ATCGAT 2 cut(s) 388, 1521
BseDI CCNNGG 2 cut(s) 123, 1653
BseGI GGATG 1 cut(s) 1663
BseJI GATNNNNATC 2 cut(s) 384, 933
BseLI CCNNNNNNNGG 5 cut(s) 514, 856, 889, 1580, 1660
BseMI GCAATG 3 cut(s) 417, 1386, 1836
BseMII CTCAG 5 cut(s) 552, 891, 969, 1056, 1383
BseRI GAGGAG 1 cut(s) 497
BseSI GKGCMC 1 cut(s) 1085
BseXI GCAGC 5 cut(s) 105, 199, 1106, 1295, 1630
BsgI GTGCAG 2 cut(s) 1708, 1754
Bsh1236I CGCG 2 cut(s) 1004, 1782
BshFI GGCC 7 cut(s) 564, 849, 1255, 1406, 1418, 1652, 1750
BshNI GGYRCC 1 cut(s) 1082
BshVI ATCGAT 2 cut(s) 388, 1521
BsiHKAI GWGCWC 2 cut(s) 200, 1319
BsiHKCI CYCGRG 2 cut(s) 122, 1046
BsiSI CCGG 1 cut(s) 832
BsiWI CGTACG 1 cut(s) 80
BslFI GGGAC 2 cut(s) 141, 1728
BslI CCNNNNNNNGG 5 cut(s) 514, 856, 889, 1580, 1660
BsmAI GTCTC 2 cut(s) 819, 1255
BsmFI GGGAC 2 cut(s) 141, 1728
BsnI GGCC 7 cut(s) 564, 849, 1255, 1406, 1418, 1652, 1750
BsoBI CYCGRG 2 cut(s) 122, 1046
Bsp119I TTCGAA 2 cut(s) 212, 1139
Bsp1286I GDGCHC 3 cut(s) 200, 1085, 1319
Bsp143I GATC 7 cut(s) 414, 428, 445, 762, 1036, 1410, 1518
BspACI CCGC 3 cut(s) 1004, 1217, 1782
BspANI GGCC 7 cut(s) 564, 849, 1255, 1406, 1418, 1652, 1750
BspCNI CTCAG 5 cut(s) 551, 892, 968, 1057, 1382
BspDI ATCGAT 2 cut(s) 388, 1521
BspFNI CGCG 2 cut(s) 1004, 1782
BspLI GGNNCC 1 cut(s) 1084
BspOI GCTAGC 1 cut(s) 209
BspPI GGATC 1 cut(s) 436
BspT104I TTCGAA 2 cut(s) 212, 1139
BspT107I GGYRCC 1 cut(s) 1082
BsrDI GCAATG 3 cut(s) 417, 1386, 1836
BssECI CCNNGG 2 cut(s) 123, 1653
BssMI GATC 7 cut(s) 414, 428, 445, 762, 1036, 1410, 1518
BssNAI GTATAC 1 cut(s) 1528
Bst1107I GTATAC 1 cut(s) 1528
Bst2UI CCWGG 1 cut(s) 1655
Bst4CI ACNGT 6 cut(s) 85, 104, 653, 799, 1702, 1916
Bst6I CTCTTC 1 cut(s) 1683
BstAPI GCANNNNNTGC 1 cut(s) 17
BstBAI YACGTR 1 cut(s) 992
BstBI TTCGAA 2 cut(s) 212, 1139
BstC8I GCNNGC 5 cut(s) 9, 207, 1384, 1404, 1462
BstDEI CTNAG 7 cut(s) 35, 538, 766, 900, 955, 1065, 1369
BstENI CCTNNNNNAGG 1 cut(s) 1658
BstF5I GGATG 1 cut(s) 1663
BstFNI CGCG 2 cut(s) 1004, 1782
BstHHI GCGC 2 cut(s) 1843, 1884
BstKTI GATC 7 cut(s) 417, 431, 448, 765, 1039, 1413, 1521
BstMAI GTCTC 2 cut(s) 819, 1255
BstMBI GATC 7 cut(s) 414, 428, 445, 762, 1036, 1410, 1518
BstMWI GCNNNNNNNGC 5 cut(s) 17, 55, 1280, 1388, 1610
BstNI CCWGG 1 cut(s) 1655
BstNSI RCATGY 3 cut(s) 1241, 1306, 1680
BstSCI CCNGG 1 cut(s) 1653
BstSLI GKGCMC 1 cut(s) 1085
BstUI CGCG 2 cut(s) 1004, 1782
BstV1I GCAGC 5 cut(s) 105, 199, 1106, 1295, 1630
BstV2I GAAGAC 2 cut(s) 585, 1208
BstX2I RGATCY 2 cut(s) 445, 1410
BstXI CCANNNNNNTGG 1 cut(s) 1414
BstYI RGATCY 2 cut(s) 445, 1410
BstZ17I GTATAC 1 cut(s) 1528
Bsu15I ATCGAT 2 cut(s) 388, 1521
BsuRI GGCC 7 cut(s) 564, 849, 1255, 1406, 1418, 1652, 1750
BsuTUI ATCGAT 2 cut(s) 388, 1521
BtsCI GGATG 1 cut(s) 1663
BtsI GCAGTG 1 cut(s) 1854
BtsIMutI CAGTG 4 cut(s) 140, 897, 1854, 1921
Cac8I GCNNGC 5 cut(s) 9, 207, 1384, 1404, 1462
CfoI GCGC 2 cut(s) 1843, 1884
Cfr13I GGNCC 1 cut(s) 1651
ClaI ATCGAT 2 cut(s) 388, 1521
Csp6I GTAC 4 cut(s) 81, 978, 1297, 1544
CspCI CAANNNNNGTGG 2 cut(s) 19, 54
CviQI GTAC 4 cut(s) 81, 978, 1297, 1544
DdeI CTNAG 7 cut(s) 35, 538, 766, 900, 955, 1065, 1369
DpnI GATC 7 cut(s) 416, 430, 447, 764, 1038, 1412, 1520
DpnII GATC 7 cut(s) 414, 428, 445, 762, 1036, 1410, 1518
DraI TTTAAA 1 cut(s) 1708
EaeI YGGCCR 4 cut(s) 847, 1253, 1404, 1416
Eam1104I CTCTTC 1 cut(s) 1683
EarI CTCTTC 1 cut(s) 1683
Eco57I CTGAAG 1 cut(s) 72
Eco72I CACGTG 1 cut(s) 992
Eco88I CYCGRG 2 cut(s) 122, 1046
EcoNI CCTNNNNNAGG 1 cut(s) 1658
EcoO109I RGGNCCY 1 cut(s) 1651
EcoRI GAATTC 3 cut(s) 1055, 1135, 1373
EcoRII CCWGG 1 cut(s) 1653
FalI AAGNNNNNCTT 2 cut(s) 193, 225
FaqI GGGAC 2 cut(s) 141, 1728
FauI CCCGC 2 cut(s) 1210, 1775
FblI GTMKAC 1 cut(s) 1527
Fnu4HI GCNGC 5 cut(s) 119, 188, 1120, 1284, 1619
FokI GGATG 1 cut(s) 1670
Fsp4HI GCNGC 5 cut(s) 119, 188, 1120, 1284, 1619
GlaI GCGC 2 cut(s) 1842, 1883
GluI GCNGC 5 cut(s) 119, 188, 1120, 1284, 1619
GsuI CTGGAG 2 cut(s) 730, 1286
HaeIII GGCC 7 cut(s) 564, 849, 1255, 1406, 1418, 1652, 1750
HapII CCGG 1 cut(s) 832
HhaI GCGC 2 cut(s) 1843, 1884
Hin6I GCGC 2 cut(s) 1841, 1882
HinP1I GCGC 2 cut(s) 1841, 1882
HindIII AAGCTT 2 cut(s) 869, 1142
HinfI GANTC 8 cut(s) 145, 214, 313, 385, 616, 750, 1168, 1367
HpaII CCGG 1 cut(s) 832
HphI GGTGA 3 cut(s) 125, 266, 410
Hpy166II GTNNAC 2 cut(s) 1528, 1912
Hpy188I TCNGA 7 cut(s) 195, 556, 824, 1041, 1372, 1798, 1807
Hpy8I GTNNAC 2 cut(s) 1528, 1912
HpyAV CCTTC 8 cut(s) 31, 47, 710, 955, 1424, 1625, 1749, 1761
HpyCH4III ACNGT 6 cut(s) 85, 104, 653, 799, 1702, 1916
HpyCH4IV ACGT 1 cut(s) 991
HpyCH4V TGCA 8 cut(s) 7, 1122, 1274, 1306, 1391, 1460, 1725, 1771
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 55, 1280, 1388, 1610
HpyF3I CTNAG 7 cut(s) 35, 538, 766, 900, 955, 1065, 1369
HpySE526I ACGT 1 cut(s) 991
HspAI GCGC 2 cut(s) 1841, 1882
Kzo9I GATC 7 cut(s) 414, 428, 445, 762, 1036, 1410, 1518
Lsp1109I GCAGC 5 cut(s) 105, 199, 1106, 1295, 1630
MaeII ACGT 1 cut(s) 991
MaeIII GTNAC 5 cut(s) 372, 793, 851, 1679, 1874
MalI GATC 7 cut(s) 416, 430, 447, 764, 1038, 1412, 1520
MboI GATC 7 cut(s) 414, 428, 445, 762, 1036, 1410, 1518
MboII GAAGA 6 cut(s) 585, 625, 850, 1213, 1700, 1769
MflI RGATCY 2 cut(s) 445, 1410
MhlI GDGCHC 3 cut(s) 200, 1085, 1319
MlsI TGGCCA 3 cut(s) 1255, 1406, 1418
MluNI TGGCCA 3 cut(s) 1255, 1406, 1418
MlyI GAGTC 2 cut(s) 759, 1361
MmeI TCCRAC 3 cut(s) 503, 870, 1344
Mox20I TGGCCA 3 cut(s) 1255, 1406, 1418
MroXI GAANNNNTTC 1 cut(s) 1055
MscI TGGCCA 3 cut(s) 1255, 1406, 1418
MseI TTAA 5 cut(s) 300, 1008, 1644, 1707, 1851
MslI CAYNNNNRTG 2 cut(s) 782, 1338
Msp20I TGGCCA 3 cut(s) 1255, 1406, 1418
MspA1I CMGCKG 1 cut(s) 361
MspI CCGG 1 cut(s) 832
MspR9I CCNGG 1 cut(s) 1655
MvaI CCWGG 1 cut(s) 1655
MvnI CGCG 2 cut(s) 1004, 1782
MwoI GCNNNNNNNGC 5 cut(s) 17, 55, 1280, 1388, 1610
NdeII GATC 7 cut(s) 414, 428, 445, 762, 1036, 1410, 1518
NheI GCTAGC 1 cut(s) 205
NlaIV GGNNCC 1 cut(s) 1084
NmeAIII GCCGAG 1 cut(s) 1726
NmuCI GTSAC 2 cut(s) 372, 851
NspI RCATGY 3 cut(s) 1241, 1306, 1680
NspV TTCGAA 2 cut(s) 212, 1139
PaeR7I CTCGAG 1 cut(s) 1046
PciI ACATGT 2 cut(s) 1237, 1676
PcsI WCGNNNNNNNCGW 1 cut(s) 76
PdmI GAANNNNTTC 1 cut(s) 1055
PfeI GAWTC 6 cut(s) 145, 214, 313, 385, 616, 1168
Pfl23II CGTACG 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 889
PkrI GCNGC 5 cut(s) 120, 189, 1121, 1285, 1620
PleI GAGTC 2 cut(s) 758, 1361
PmaCI CACGTG 1 cut(s) 992
PmlI CACGTG 1 cut(s) 992
PpsI GAGTC 2 cut(s) 758, 1361
Ppu21I YACGTR 1 cut(s) 992
PscI ACATGT 2 cut(s) 1237, 1676
PshBI ATTAAT 1 cut(s) 1644
Psp6I CCWGG 1 cut(s) 1653
PspCI CACGTG 1 cut(s) 992
PspGI CCWGG 1 cut(s) 1653
PspLI CGTACG 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 1084
PspPI GGNCC 1 cut(s) 1651
PsuI RGATCY 2 cut(s) 445, 1410
PvuII CAGCTG 1 cut(s) 361
RsaI GTAC 4 cut(s) 82, 979, 1298, 1545
RsaNI GTAC 4 cut(s) 81, 978, 1297, 1544
RseI CAYNNNNRTG 2 cut(s) 782, 1338
SaqAI TTAA 5 cut(s) 300, 1008, 1644, 1707, 1851
SatI GCNGC 5 cut(s) 119, 188, 1120, 1284, 1619
Sau3AI GATC 7 cut(s) 414, 428, 445, 762, 1036, 1410, 1518
Sau96I GGNCC 1 cut(s) 1651
ScaI AGTACT 2 cut(s) 979, 1545
SchI GAGTC 2 cut(s) 759, 1361
ScrFI CCNGG 1 cut(s) 1655
SduI GDGCHC 3 cut(s) 200, 1085, 1319
Sfr274I CTCGAG 1 cut(s) 1046
SfuI TTCGAA 2 cut(s) 212, 1139
SlaI CTCGAG 1 cut(s) 1046
SmiMI CAYNNNNRTG 2 cut(s) 782, 1338
SmlI CTYRAG 3 cut(s) 451, 568, 1046
SmoI CTYRAG 3 cut(s) 451, 568, 1046
SpeI ACTAGT 1 cut(s) 437
SsiI CCGC 3 cut(s) 1004, 1217, 1782
StyD4I CCNGG 1 cut(s) 1653
TaaI ACNGT 6 cut(s) 85, 104, 653, 799, 1702, 1916
TaiI ACGT 1 cut(s) 994
TaqI TCGA 7 cut(s) 212, 378, 388, 970, 1047, 1139, 1521
TatI WGTACW 3 cut(s) 977, 1296, 1543
TfiI GAWTC 6 cut(s) 145, 214, 313, 385, 616, 1168
Tru1I TTAA 5 cut(s) 300, 1008, 1644, 1707, 1851
Tru9I TTAA 5 cut(s) 300, 1008, 1644, 1707, 1851
TscAI CASTG 4 cut(s) 147, 904, 1861, 1921
TseFI GTSAC 2 cut(s) 372, 851
TseI GCWGC 5 cut(s) 118, 187, 1119, 1283, 1618
Tsp45I GTSAC 2 cut(s) 372, 851
TspDTI ATGAA 7 cut(s) 264, 660, 1170, 1181, 1322, 1527, 1772
TspRI CASTG 4 cut(s) 147, 904, 1861, 1921
Van91I CCANNNNNTGG 1 cut(s) 889
VspI ATTAAT 1 cut(s) 1644
XagI CCTNNNNNAGG 1 cut(s) 1658
XapI RAATTY 8 cut(s) 245, 258, 341, 533, 995, 1055, 1135, 1373
XbaI TCTAGA 3 cut(s) 221, 442, 1549
XceI RCATGY 3 cut(s) 1241, 1306, 1680
XhoI CTCGAG 1 cut(s) 1046
XmiI GTMKAC 1 cut(s) 1527
XmnI GAANNNNTTC 1 cut(s) 1055
ZrmI AGTACT 2 cut(s) 979, 1545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.