Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001321

Physical Location & Seq

Genomic Coordinates Forward (+)

5162837 .. 5165917

Gene Structure 3081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016262

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2124 bp

ATGGCGTTTTCTGTTCACATTCTGCTCGTTGGCCACCTTCAGGGAAGCTTCAAATGCCGTCTTGCATTACCTTTAACAAGGTGCACCGGAAACTCCGTCACCGGATTGAATCTCAACACCGTAAACCTCACCCTTGAAGTTACACCCTTCATTTGTGACCTCAACAACCTCACACATCTTGACCTTGGTAATAACTACCACCCGGGAGATTTTCCCTCATCTCTCTACAACTGCTCCAAGCTAGAGTATCTTGACCTCTCGCAAAACTACTTTGTGGGTACAATTCCTGATGACATCGACAGACTGCCTAAGCTTAAGATCCTCAACCTTGCTGCCAACAACTTCTCCGGTGACATTCCGGCGTCTATTGGGAACTTACAGGAGCTGGCTACTTTGGATATATACATGAACCAGTTCAACGGCTCTGTCCCAGCTGAAATAGGTAACCTCTCCAACCTTGAGGAACTCTGGCTCTCTTGGCTTCCCAAAATGGCGCTATGGAAGCTGCCTTTTAATTTCACCAAATTGAAAAAGATGAAGATATTGAAGATACGCGAAGCAAATTTGATTGGGAAAATACCAGAATCTATTGGAGAATTGGAAGTACTTGAAATATTGGATTTGGCGCAGAACAAGTTGAGCGGGAATATACCAAGCGGTGAGATTCCAGAGAGCATTGGCCGCCTGCCAAATCTTGTGATTTTCAAAATGTTCAACATGAACCTGTCAGGAACAATTCCTCCAGAGCTTGGAAAGCATTCGCTGCTCGAAGATTTCCAGGTTTCGGTGAATAAGCTTACCGGAAAGCTGCCAGACGGCTTGTGTAAAAATGGTAAGCTTGTGGGAGTTGTTGCTTATGAGAATAGCCTCACTGGGGAGCTACCAAGCTCTCTAGGAAATTGTGATAGTCTGCTGATAGTTACAGTTTATGATAACATGTTGTCTGGGAACATTCCTAGTGGTATGTGGAATGCATTGAATTTGAGTTATGTGATGATGAGCAACAATTCGTTCACGGGTGAGCTTCCTGAGAAGATGTCATATAATCTTCAAAGGCTGGAAATCGGAGATAACAAGTTTTTGATCTTCAAAGTCTTCCTTATTCCTCAGGAATTAACTACTCTTCCGAGCTTGACGACTCTGACCCTGCATCAGAATCAGCTTAGCGGACCCCTTCCATCAGATATTGTATCATGGAAGTCACTAAACACTCTTGATCTGCGTAGAAATCAACTCTCCGGACCAATTCCAGAGATACTTGGTGGTTTGCCCGCCCTTACTGAATTGGACCTTTCTGAAAACCAGTTTTCAGGCCAAATTCCAAATCAACTTGGCCATCTGAAACTCAATGAGTTCAACCTCTCTTCAAATCTCCTCACTGGCGAGATCCCAATTTCATTTGAAAACTCTGCATATGATACAAGCGTCTTGAACAGTACCGATCTTTGTGCAAAAACCAGTGGTGTGAATCTCAATATATGCTCTCAATCGCCAAAGTCCAGCAAGATTTCAACTCCGTCTCTTTCTTTGATCTTAAGTCTAAGCGCGGTGTTGTTCGTGTTGGTTTTTTCCTTATTAATCTTCTTTGTTAGAGGTTACTTGAGGAGGAAGGATGAATCAGACGCAGACTGGAAGCTCGTTGCATTTCAGAGGTTGAATTTCACCATCTCAAATATCTTGAAAGGGTTGACAGAAAGCAATGTGATTGGAAGTGGTGGATCAGGGAAGGTTTATCGTGTACCTGTGAATCGTACAGGTGATTTTGTAGCTGCGAAGAGGATTTGTACCAACAAGAAGATCATGGAGGAGAGGCTTGAAAAAGAGTTTCTTGCAGAAGTCAAGATACTGAGCTCAATTCGACATGCCAACATAGTGAAGCTGCTGTGCTGCATATCCAGTGAGACTTCGAAACTTCTTGTATATGAGTACTTAGACAATCGAAGCCTAGATCGATGGTTGCACAAGAAAAACAGGCCATACCTATCCAACCTCTCAAGTTCAGTCCATCATGTTGTTCTGGACTGGCCCAAGAGGTTGCAGATTGCAGTGGGAGCTGCTAAGGGCCTCTGCTATATGCATCATGACTGTGTTCAACCGGTCAACCCGTTGTGCATCGAGACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010468 GO:0019222 GO:0022622 GO:0032501 GO:0032502 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

708

Amino Acids

78.32

Weight (kDa)

6.68

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	56 - 115	2.7e-09	Leucine rich repeat
LRR_14	PF23598	73 - 185	1.4e-11	Leucine-rich repeat region
LRR_14	PF23598	174 - 353	3.5e-08	Leucine-rich repeat region
LRR_8	PF13855	401 - 459	1.3e-06	Leucine rich repeat
Pkinase	PF00069	565 - 695	1.4e-15	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	566 - 694	1.4e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25930
fragaria_vesca	FvH4_1g06180 FvH4_1g06180 FvH4_1g06220 FvH4_1g06260 FvH4_1g07450 FvH4_1g07450 FvH4_1g07450 FvH4_2g35260
malus_domestica	MD02G1066200.v1.1 MD02G1066300.v1.1 MD02G1066400.v1.1 MD08G1110500.v1.1 MD15G1196900.v1.1
prunus_persica	Prupe.1G444700_v2.0.a1 Prupe.7G218900_v2.0.a1 Prupe.7G219100_v2.0.a1 Prupe.7G219300_v2.0.a1 Prupe.7G219300_v2.0.a1 Prupe.7G219400_v2.0.a1 Prupe.7G219500_v2.0.a1
pyrus_communis	pycom02g05250 pycom08g08890 pycom08g09200 pycom15g08430 pycom15g17590
rosa_chinensis	RchiOBHm_Chr2g0091961 RchiOBHm_Chr6g0306681
rosa_laevigata	RLG00000010774 RLG00000016262 RLG00000016266
rosa_multiflora	Rmu_co7980064.1_g000001 Rmu_sc0005201.1_g000003 Rmu_sc0009216.1_g000004 Rmu_sc0014758.1_g000001 Rmu_sc0017125.1_g000005 Rmu_sc0017648.1_g000001 Rmu_sc0017649.1_g000001 Rmu_sc0017785.1_g000010 Rmu_sc0017785.1_g000011
rosa_roxburghii	Rroxscaffold_2G00149580 Rroxscaffold_7G00161550
rosa_rugosa	Rorug02G0022000 Rorug06G0351600
rosa_samantha	Rh2AG067500 Rh2BG066800 Rh2CG068100 Rh2DG066600 Rh6AG463900 Rh6BG437100 Rh6CG478000 Rh6DG464800
rosa_wichuraiana	Rw2G005350 Rw6G040410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	749
AccBSI	CCGCTC	1 cut(s)	642
AccII	CGCG	2 cut(s)	555, 1547
AccIII	TCCGGA	1 cut(s)	1238
AciI	CCGC	6 cut(s)	642, 657, 682, 1167, 1272, 1547
AclWI	GGATC	3 cut(s)	313, 1381, 1726
AcoI	YGGCCR	3 cut(s)	31, 679, 1333
AcsI	RAATTY	4 cut(s)	562, 979, 1317, 1657
AcuI	CTGAAG	1 cut(s)	23
AcyI	GRCGYC	1 cut(s)	362
AfaI	GTAC	7 cut(s)	280, 606, 1438, 1740, 1753, 1786, 1928
AfiI	CCNNNNNNNGG	4 cut(s)	40, 749, 784, 874
AflII	CTTAAG	2 cut(s)	314, 1534
AflIII	ACRYGT	1 cut(s)	936
AgeI	ACCGGT	1 cut(s)	2095
AjiI	CACGTC	1 cut(s)	2121
AjnI	CCWGG	1 cut(s)	777
AloI	GAACNNNNNNTCC	2 cut(s)	724, 756
Alw21I	GWGCWC	2 cut(s)	86, 1853
Alw26I	GTCTC	3 cut(s)	1524, 1895, 2111
Alw44I	GTGCAC	1 cut(s)	82
AlwI	GGATC	3 cut(s)	313, 1381, 1726
AlwNI	CAGNNNCTG	1 cut(s)	385
Ama87I	CYCGRG	1 cut(s)	202
Aor13HI	TCCGGA	1 cut(s)	1238
AoxI	GGCC	7 cut(s)	31, 679, 1312, 1333, 1973, 2024, 2062
ApaLI	GTGCAC	1 cut(s)	82
ApeKI	GCWGC	8 cut(s)	332, 505, 763, 808, 1769, 1879, 1887, 2054
ApoI	RAATTY	4 cut(s)	562, 979, 1317, 1657
AseI	ATTAAT	1 cut(s)	1577
AsiGI	ACCGGT	1 cut(s)	2095
Asp700I	GAANNNNTTC	2 cut(s)	413, 757
AspLEI	GCGC	3 cut(s)	496, 628, 1547
AspS9I	GGNCC	5 cut(s)	1169, 1241, 1288, 2025, 2062
AsuC2I	CCSGG	2 cut(s)	203, 204
AsuHPI	GGTGA	9 cut(s)	91, 121, 362, 511, 671, 799, 1031, 1654, 1769
AsuII	TTCGAA	1 cut(s)	1907
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	3 cut(s)	1169, 1241, 1288
AxyI	CCTNAGG	1 cut(s)	1107
BaeGI	GKGCMC	1 cut(s)	86
BaeI	ACNNNNGTAYC	2 cut(s)	1410, 1443
BalI	TGGCCA	2 cut(s)	33, 1335
BanII	GRGCYC	1 cut(s)	1853
BarI	GAAGNNNNNNTAC	2 cut(s)	1827, 1859
BbsI	GAAGAC	1 cut(s)	1087
Bbv12I	GWGCWC	2 cut(s)	86, 1853
BbvI	GCAGC	8 cut(s)	319, 492, 750, 795, 1756, 1866, 1874, 2041
BccI	CCATC	5 cut(s)	1186, 1344, 1673, 1947, 2013
BceAI	ACGGC	3 cut(s)	42, 436, 832
BcgI	CGANNNNNNTGC	2 cut(s)	1430, 1464
BciT130I	CCWGG	1 cut(s)	779
BcnI	CCSGG	2 cut(s)	203, 204
BcoDI	GTCTC	3 cut(s)	1524, 1895, 2111
BfaI	CTAG	4 cut(s)	242, 893, 957, 1946
BfoI	RGCGCY	1 cut(s)	497
BfrI	CTTAAG	2 cut(s)	314, 1534
BisI	GCNGC	9 cut(s)	333, 506, 682, 764, 809, 1770, 1880, 1888, 2055
BlpI	GCTNAGC	1 cut(s)	1163
BlsI	GCNGC	9 cut(s)	334, 507, 683, 765, 810, 1771, 1881, 1889, 2056
BmcAI	AGTACT	2 cut(s)	606, 1928
Bme1390I	CCNGG	3 cut(s)	203, 204, 779
Bme18I	GGWCC	3 cut(s)	1169, 1241, 1288
BmeT110I	CYCGRG	1 cut(s)	202
BmgBI	CACGTC	1 cut(s)	2121
BmgT120I	GGNCC	5 cut(s)	1169, 1241, 1288, 2025, 2062
BmiI	GGNNCC	1 cut(s)	1171
BmrFI	CCNGG	3 cut(s)	203, 204, 779
BmrI	ACTGGG	1 cut(s)	882
BmsI	GCATC	2 cut(s)	1159, 2086
BmuI	ACTGGG	1 cut(s)	882
BpiI	GAAGAC	1 cut(s)	1087
BpmI	CTGGAG	1 cut(s)	726
Bpu10I	CCTNAGC	2 cut(s)	309, 2058
Bpu1102I	GCTNAGC	1 cut(s)	1163
Bpu14I	TTCGAA	1 cut(s)	1907
BpuEI	CTTGAG	3 cut(s)	479, 1621, 1978
BpuMI	CCSGG	2 cut(s)	203, 204
Bsa29I	ATCGAT	1 cut(s)	1951
BsaHI	GRCGYC	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	184, 202
BsaWI	WCCGGW	6 cut(s)	86, 101, 347, 800, 1238, 2095
BsaXI	ACNNNNNCTCC	6 cut(s)	218, 248, 329, 359, 724, 754
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 749, 784, 874
Bse118I	RCCGGY	1 cut(s)	2095
Bse1I	ACTGG	8 cut(s)	412, 877, 1303, 1384, 1458, 1634, 1896, 2027
Bse21I	CCTNAGG	1 cut(s)	1107
Bse3DI	GCAATG	1 cut(s)	1705
BseAI	TCCGGA	1 cut(s)	1238
BseBI	CCWGG	1 cut(s)	779
BseCI	ATCGAT	1 cut(s)	1951
BseDI	CCNNGG	2 cut(s)	184, 202
BseGI	GGATG	1 cut(s)	1618
BseLI	CCNNNNNNNGG	4 cut(s)	40, 749, 784, 874
BseMI	GCAATG	1 cut(s)	1705
BseMII	CTCAG	3 cut(s)	1020, 1121, 1838
BseNI	ACTGG	8 cut(s)	412, 877, 1303, 1384, 1458, 1634, 1896, 2027
BseRI	GAGGAG	3 cut(s)	1364, 1618, 1820
BseSI	GKGCMC	1 cut(s)	86
BseXI	GCAGC	8 cut(s)	319, 492, 750, 795, 1756, 1866, 1874, 2041
BseYI	CCCAGC	1 cut(s)	430
Bsh1236I	CGCG	2 cut(s)	555, 1547
BshFI	GGCC	7 cut(s)	33, 681, 1314, 1335, 1975, 2026, 2064
BshTI	ACCGGT	1 cut(s)	2095
BshVI	ATCGAT	1 cut(s)	1951
BsiHKAI	GWGCWC	2 cut(s)	86, 1853
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	8 cut(s)	87, 102, 203, 348, 359, 801, 1239, 2096
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	4 cut(s)	40, 749, 784, 874
BsmAI	GTCTC	3 cut(s)	1524, 1895, 2111
BsmBI	CGTCTC	2 cut(s)	1524, 2111
BsmFI	GGGAC	1 cut(s)	413
BsmI	GAATGC	2 cut(s)	757, 976
BsnI	GGCC	7 cut(s)	33, 681, 1314, 1335, 1975, 2026, 2064
BsoBI	CYCGRG	1 cut(s)	202
Bsp119I	TTCGAA	1 cut(s)	1907
Bsp1286I	GDGCHC	2 cut(s)	86, 1853
Bsp13I	TCCGGA	1 cut(s)	1238
Bsp143I	GATC	9 cut(s)	318, 1083, 1216, 1386, 1441, 1530, 1718, 1797, 1948
Bsp1720I	GCTNAGC	1 cut(s)	1163
BspACI	CCGC	6 cut(s)	642, 657, 682, 1167, 1272, 1547
BspANI	GGCC	7 cut(s)	33, 681, 1314, 1335, 1975, 2026, 2064
BspCNI	CTCAG	3 cut(s)	1021, 1120, 1839
BspDI	ATCGAT	1 cut(s)	1951
BspEI	TCCGGA	1 cut(s)	1238
BspFNI	CGCG	2 cut(s)	555, 1547
BspHI	TCATGA	1 cut(s)	2080
BspLI	GGNNCC	1 cut(s)	1171
BspPI	GGATC	3 cut(s)	313, 1381, 1726
BspT104I	TTCGAA	1 cut(s)	1907
BspTI	CTTAAG	2 cut(s)	314, 1534
BsrBI	CCGCTC	1 cut(s)	642
BsrDI	GCAATG	1 cut(s)	1705
BsrFI	RCCGGY	1 cut(s)	2095
BsrI	ACTGG	8 cut(s)	412, 877, 1303, 1384, 1458, 1634, 1896, 2027
BssAI	RCCGGY	1 cut(s)	2095
BssECI	CCNNGG	2 cut(s)	184, 202
BssMI	GATC	9 cut(s)	318, 1083, 1216, 1386, 1441, 1530, 1718, 1797, 1948
BssNI	GRCGYC	1 cut(s)	362
BssT1I	CCWWGG	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	779
Bst4CI	ACNGT	4 cut(s)	121, 925, 1436, 2087
Bst6I	CTCTTC	3 cut(s)	1128, 1369, 1769
BstACI	GRCGYC	1 cut(s)	362
BstAFI	CTTAAG	2 cut(s)	314, 1534
BstAPI	GCANNNNNTGC	1 cut(s)	763
BstBI	TTCGAA	1 cut(s)	1907
BstC8I	GCNNGC	3 cut(s)	387, 686, 1272
BstDEI	CTNAG	8 cut(s)	309, 1029, 1107, 1163, 1541, 1847, 1930, 2058
BstEII	GGTNACC	1 cut(s)	443
BstF5I	GGATG	1 cut(s)	1618
BstFNI	CGCG	2 cut(s)	555, 1547
BstH2I	RGCGCY	1 cut(s)	497
BstHHI	GCGC	3 cut(s)	496, 628, 1547
BstKTI	GATC	9 cut(s)	321, 1086, 1219, 1389, 1444, 1533, 1721, 1800, 1951
BstMAI	GTCTC	3 cut(s)	1524, 1895, 2111
BstMBI	GATC	9 cut(s)	318, 1083, 1216, 1386, 1441, 1530, 1718, 1797, 1948
BstMWI	GCNNNNNNNGC	7 cut(s)	54, 478, 502, 681, 754, 763, 2051
BstNI	CCWGG	1 cut(s)	779
BstNSI	RCATGY	2 cut(s)	940, 1865
BstPI	GGTNACC	1 cut(s)	443
BstSCI	CCNGG	3 cut(s)	201, 202, 777
BstSLI	GKGCMC	1 cut(s)	86
BstUI	CGCG	2 cut(s)	555, 1547
BstV1I	GCAGC	8 cut(s)	319, 492, 750, 795, 1756, 1866, 1874, 2041
BstV2I	GAAGAC	1 cut(s)	1087
BstX2I	RGATCY	2 cut(s)	318, 1386
BstYI	RGATCY	2 cut(s)	318, 1386
Bsu15I	ATCGAT	1 cut(s)	1951
Bsu36I	CCTNAGG	1 cut(s)	1107
BsuRI	GGCC	7 cut(s)	33, 681, 1314, 1335, 1975, 2026, 2064
BsuTUI	ATCGAT	1 cut(s)	1951
BtrI	CACGTC	1 cut(s)	2121
BtsCI	GGATG	1 cut(s)	1618
BtsI	GCAGTG	1 cut(s)	2052
BtsIMutI	CAGTG	5 cut(s)	870, 1377, 1465, 1903, 2052
Cac8I	GCNNGC	3 cut(s)	387, 686, 1272
CaiI	CAGNNNCTG	1 cut(s)	385
CciI	TCATGA	1 cut(s)	2080
CfoI	GCGC	3 cut(s)	496, 628, 1547
Cfr10I	RCCGGY	1 cut(s)	2095
Cfr13I	GGNCC	5 cut(s)	1169, 1241, 1288, 2025, 2062
Cfr9I	CCCGGG	1 cut(s)	202
ClaI	ATCGAT	1 cut(s)	1951
CseI	GACGC	3 cut(s)	351, 1414, 1631
Csp6I	GTAC	7 cut(s)	279, 605, 1437, 1739, 1752, 1785, 1927
CspAI	ACCGGT	1 cut(s)	2095
CviAII	CATG	8 cut(s)	406, 718, 937, 1194, 1801, 1862, 2009, 2081
CviQI	GTAC	7 cut(s)	279, 605, 1437, 1739, 1752, 1785, 1927
DdeI	CTNAG	8 cut(s)	309, 1029, 1107, 1163, 1541, 1847, 1930, 2058
DpnI	GATC	9 cut(s)	320, 1085, 1218, 1388, 1443, 1532, 1720, 1799, 1950
DpnII	GATC	9 cut(s)	318, 1083, 1216, 1386, 1441, 1530, 1718, 1797, 1948
EaeI	YGGCCR	3 cut(s)	31, 679, 1333
Eam1104I	CTCTTC	3 cut(s)	1128, 1369, 1769
EarI	CTCTTC	3 cut(s)	1128, 1369, 1769
Ecl136II	GAGCTC	1 cut(s)	1851
Eco130I	CCWWGG	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	1853
Eco47I	GGWCC	3 cut(s)	1169, 1241, 1288
Eco53kI	GAGCTC	1 cut(s)	1851
Eco57I	CTGAAG	1 cut(s)	23
Eco81I	CCTNAGG	1 cut(s)	1107
Eco88I	CYCGRG	1 cut(s)	202
Eco91I	GGTNACC	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	1851
EcoO109I	RGGNCCY	1 cut(s)	2062
EcoO65I	GGTNACC	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	777
EcoT14I	CCWWGG	1 cut(s)	184
EcoT22I	ATGCAT	2 cut(s)	976, 2079
EcoT38I	GRGCYC	1 cut(s)	1853
ErhI	CCWWGG	1 cut(s)	184
Esp3I	CGTCTC	2 cut(s)	1524, 2111
FaeI	CATG	8 cut(s)	409, 721, 940, 1197, 1804, 1865, 2012, 2084
FalI	AAGNNNNNCTT	4 cut(s)	1083, 1115, 1812, 1844
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	8 cut(s)	405, 717, 936, 1193, 1800, 1861, 2008, 2080
FauI	CCCGC	2 cut(s)	635, 1279
FauNDI	CATATG	1 cut(s)	1414
Fnu4HI	GCNGC	9 cut(s)	333, 506, 682, 764, 809, 1770, 1880, 1888, 2055
FokI	GGATG	1 cut(s)	1625
FriOI	GRGCYC	1 cut(s)	1853
Fsp4HI	GCNGC	9 cut(s)	333, 506, 682, 764, 809, 1770, 1880, 1888, 2055
FspBI	CTAG	4 cut(s)	242, 893, 957, 1946
GlaI	GCGC	3 cut(s)	495, 627, 1546
GluI	GCNGC	9 cut(s)	333, 506, 682, 764, 809, 1770, 1880, 1888, 2055
GsaI	CCCAGC	1 cut(s)	434
GsuI	CTGGAG	1 cut(s)	726
HaeII	RGCGCY	1 cut(s)	497
HaeIII	GGCC	7 cut(s)	33, 681, 1314, 1335, 1975, 2026, 2064
HapII	CCGG	8 cut(s)	87, 102, 203, 348, 359, 801, 1239, 2096
HgaI	GACGC	3 cut(s)	351, 1414, 1631
HhaI	GCGC	3 cut(s)	496, 628, 1547
Hin1I	GRCGYC	1 cut(s)	362
Hin1II	CATG	8 cut(s)	409, 721, 940, 1197, 1804, 1865, 2012, 2084
Hin6I	GCGC	3 cut(s)	494, 626, 1545
HinP1I	GCGC	3 cut(s)	494, 626, 1545
HincII	GTYRAC	2 cut(s)	1689, 2101
HindII	GTYRAC	2 cut(s)	1689, 2101
HindIII	AAGCTT	4 cut(s)	46, 311, 794, 836
HinfI	GANTC	8 cut(s)	109, 584, 664, 1138, 1156, 1468, 1616, 1747
HpaII	CCGG	8 cut(s)	87, 102, 203, 348, 359, 801, 1239, 2096
HphI	GGTGA	9 cut(s)	91, 121, 362, 511, 671, 799, 1031, 1654, 1769
Hpy166II	GTNNAC	7 cut(s)	16, 84, 124, 1014, 1689, 1739, 2101
Hpy188I	TCNGA	9 cut(s)	1067, 1128, 1143, 1155, 1183, 1297, 1341, 1621, 1650
Hpy8I	GTNNAC	7 cut(s)	16, 84, 124, 1014, 1689, 1739, 2101
HpyAV	CCTTC	5 cut(s)	47, 157, 1184, 1603, 1720
HpyCH4III	ACNGT	4 cut(s)	121, 925, 1436, 2087
HpyCH4IV	ACGT	1 cut(s)	2120
HpyF10VI	GCNNNNNNNGC	7 cut(s)	54, 478, 502, 681, 754, 763, 2051
HpyF3I	CTNAG	8 cut(s)	309, 1029, 1107, 1163, 1541, 1847, 1930, 2058
HpySE526I	ACGT	1 cut(s)	2120
Hsp92I	GRCGYC	1 cut(s)	362
Hsp92II	CATG	8 cut(s)	409, 721, 940, 1197, 1804, 1865, 2012, 2084
HspAI	GCGC	3 cut(s)	494, 626, 1545
Kpn2I	TCCGGA	1 cut(s)	1238
Kzo9I	GATC	9 cut(s)	318, 1083, 1216, 1386, 1441, 1530, 1718, 1797, 1948
LmnI	GCTCC	4 cut(s)	239, 382, 877, 2051
Lsp1109I	GCAGC	8 cut(s)	319, 492, 750, 795, 1756, 1866, 1874, 2041
LweI	GCATC	2 cut(s)	1159, 2086
MaeI	CTAG	4 cut(s)	242, 893, 957, 1946
MaeII	ACGT	1 cut(s)	2120
MaeIII	GTNAC	8 cut(s)	97, 139, 155, 350, 443, 919, 1200, 1595
MalI	GATC	9 cut(s)	320, 1085, 1218, 1388, 1443, 1532, 1720, 1799, 1950
MbiI	CCGCTC	1 cut(s)	642
MboI	GATC	9 cut(s)	318, 1083, 1216, 1386, 1441, 1530, 1718, 1797, 1948
MflI	RGATCY	2 cut(s)	318, 1386
MhlI	GDGCHC	2 cut(s)	86, 1853
MlsI	TGGCCA	2 cut(s)	33, 1335
MluNI	TGGCCA	2 cut(s)	33, 1335
MlyI	GAGTC	1 cut(s)	1132
MmeI	TCCRAC	2 cut(s)	477, 2010
Mox20I	TGGCCA	2 cut(s)	33, 1335
Mph1103I	ATGCAT	2 cut(s)	976, 2079
MroI	TCCGGA	1 cut(s)	1238
MroXI	GAANNNNTTC	2 cut(s)	413, 757
MscI	TGGCCA	2 cut(s)	33, 1335
MseI	TTAA	6 cut(s)	74, 315, 513, 1115, 1535, 1577
MslI	CAYNNNNRTG	1 cut(s)	2085
Msp20I	TGGCCA	2 cut(s)	33, 1335
MspA1I	CMGCKG	1 cut(s)	434
MspCI	CTTAAG	2 cut(s)	314, 1534
MspI	CCGG	8 cut(s)	87, 102, 203, 348, 359, 801, 1239, 2096
MspR9I	CCNGG	3 cut(s)	203, 204, 779
Mva1269I	GAATGC	2 cut(s)	757, 976
MvaI	CCWGG	1 cut(s)	779
MvnI	CGCG	2 cut(s)	555, 1547
MwoI	GCNNNNNNNGC	7 cut(s)	54, 478, 502, 681, 754, 763, 2051
NciI	CCSGG	2 cut(s)	203, 204
NdeI	CATATG	1 cut(s)	1414
NdeII	GATC	9 cut(s)	318, 1083, 1216, 1386, 1441, 1530, 1718, 1797, 1948
NlaIII	CATG	8 cut(s)	409, 721, 940, 1197, 1804, 1865, 2012, 2084
NlaIV	GGNNCC	1 cut(s)	1171
NmuCI	GTSAC	4 cut(s)	97, 155, 350, 1200
NsiI	ATGCAT	2 cut(s)	976, 2079
NspI	RCATGY	2 cut(s)	940, 1865
NspV	TTCGAA	1 cut(s)	1907
PagI	TCATGA	1 cut(s)	2080
PciI	ACATGT	1 cut(s)	936
PctI	GAATGC	2 cut(s)	757, 976
PdmI	GAANNNNTTC	2 cut(s)	413, 757
PfeI	GAWTC	7 cut(s)	109, 584, 664, 1156, 1468, 1616, 1747
PflMI	CCANNNNNTGG	1 cut(s)	749
PinAI	ACCGGT	1 cut(s)	2095
PkrI	GCNGC	9 cut(s)	334, 507, 683, 765, 810, 1771, 1881, 1889, 2056
PleI	GAGTC	1 cut(s)	1132
PpsI	GAGTC	1 cut(s)	1132
PscI	ACATGT	1 cut(s)	936
PshBI	ATTAAT	1 cut(s)	1577
Psp124BI	GAGCTC	1 cut(s)	1853
Psp6I	CCWGG	1 cut(s)	777
PspEI	GGTNACC	1 cut(s)	443
PspFI	CCCAGC	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	777
PspN4I	GGNNCC	1 cut(s)	1171
PspPI	GGNCC	5 cut(s)	1169, 1241, 1288, 2025, 2062
PstNI	CAGNNNCTG	1 cut(s)	385
PsuI	RGATCY	2 cut(s)	318, 1386
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	7 cut(s)	280, 606, 1438, 1740, 1753, 1786, 1928
RsaNI	GTAC	7 cut(s)	279, 605, 1437, 1739, 1752, 1785, 1927
RseI	CAYNNNNRTG	1 cut(s)	2085
SacI	GAGCTC	1 cut(s)	1853
SaqAI	TTAA	6 cut(s)	74, 315, 513, 1115, 1535, 1577
SatI	GCNGC	9 cut(s)	333, 506, 682, 764, 809, 1770, 1880, 1888, 2055
Sau3AI	GATC	9 cut(s)	318, 1083, 1216, 1386, 1441, 1530, 1718, 1797, 1948
Sau96I	GGNCC	5 cut(s)	1169, 1241, 1288, 2025, 2062
ScaI	AGTACT	2 cut(s)	606, 1928
SchI	GAGTC	1 cut(s)	1132
ScrFI	CCNGG	3 cut(s)	203, 204, 779
SduI	GDGCHC	2 cut(s)	86, 1853
SfaNI	GCATC	2 cut(s)	1159, 2086
SfuI	TTCGAA	1 cut(s)	1907
SinI	GGWCC	3 cut(s)	1169, 1241, 1288
SmaI	CCCGGG	1 cut(s)	204
SmiMI	CAYNNNNRTG	1 cut(s)	2085
SmlI	CTYRAG	5 cut(s)	314, 458, 1534, 1600, 1993
SmoI	CTYRAG	5 cut(s)	314, 458, 1534, 1600, 1993
SsiI	CCGC	6 cut(s)	642, 657, 682, 1167, 1272, 1547
SspI	AATATT	1 cut(s)	615
SspMI	CTAG	4 cut(s)	242, 893, 957, 1946
SstI	GAGCTC	1 cut(s)	1853
StyD4I	CCNGG	3 cut(s)	201, 202, 777
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	4 cut(s)	121, 925, 1436, 2087
TaiI	ACGT	1 cut(s)	2123
TaqI	TCGA	7 cut(s)	297, 768, 1858, 1907, 1939, 1951, 2115
TatI	WGTACW	2 cut(s)	604, 1926
TauI	GCSGC	1 cut(s)	684
TfiI	GAWTC	7 cut(s)	109, 584, 664, 1156, 1468, 1616, 1747
Tru1I	TTAA	6 cut(s)	74, 315, 513, 1115, 1535, 1577
Tru9I	TTAA	6 cut(s)	74, 315, 513, 1115, 1535, 1577
TscAI	CASTG	5 cut(s)	877, 1384, 1465, 1903, 2052
TseFI	GTSAC	4 cut(s)	97, 155, 350, 1200
TseI	GCWGC	8 cut(s)	332, 505, 763, 808, 1769, 1879, 1887, 2054
Tsp45I	GTSAC	4 cut(s)	97, 155, 350, 1200
TspDTI	ATGAA	6 cut(s)	139, 422, 551, 734, 1386, 1629
TspGWI	ACGGA	2 cut(s)	85, 1506
TspMI	CCCGGG	1 cut(s)	202
TspRI	CASTG	5 cut(s)	877, 1384, 1465, 1903, 2052
Van91I	CCANNNNNTGG	1 cut(s)	749
Vha464I	CTTAAG	2 cut(s)	314, 1534
VneI	GTGCAC	1 cut(s)	82
VpaK11BI	GGWCC	3 cut(s)	1169, 1241, 1288
VspI	ATTAAT	1 cut(s)	1577
XapI	RAATTY	4 cut(s)	562, 979, 1317, 1657
XceI	RCATGY	2 cut(s)	940, 1865
XmaI	CCCGGG	1 cut(s)	202
XmnI	GAANNNNTTC	2 cut(s)	413, 757
XspI	CTAG	4 cut(s)	242, 893, 957, 1946
ZrmI	AGTACT	2 cut(s)	606, 1928
Zsp2I	ATGCAT	2 cut(s)	976, 2079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.