Rmu_co7980064.1_g000001
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7980064.1
OG0001321
Physical Location & Seq
Forward (+)
50 .. 514
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7980064.1_g000001.1.cds

Sequence Viewer

Length: 465 bp
atggccaaaatactcctaccactcttcttctccatcctcatctccttaccctttaccgtaatttcacaatcctcggattccgatcaggcgatcctactcaacctcaaacagcaatggggcgatccaccgtccatccagtcctggaactcttggtcctcaccgtgcgaatggccggaggtcatctgcacctccggcagggtcaccggtctcttcctcccagaaaagaatatcacggagaaaattccggccaccatttgcgaccttccgaacctcaccgccctcaacctcgcctggaattacattcccggcgagtttccgacgtctctctacagctgctccaagctccaatacctcgacctctcccagaactacttcgtcggttcaattccgggagatatcgacctgatttcgtcgtctctacaatacttgaacctcggcgggaacaacttctccggcgacgttccg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

155

Amino Acids

17.11

Weight (kDa)

4.16

Isoelectric Point (pI)

55.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 323
AciI CCGC 2 cut(s) 276, 438
AclWI GGATC 2 cut(s) 85, 116
AcoI YGGCCR 3 cut(s) 3, 170, 246
AcsI RAATTY 1 cut(s) 240
AcyI GRCGYC 1 cut(s) 320
AfiI CCNNNNNNNGG 1 cut(s) 195
AgeI ACCGGT 1 cut(s) 203
AgsI TTSAA 2 cut(s) 384, 430
AjnI CCWGG 2 cut(s) 140, 290
AloI GAACNNNNNNTCC 3 cut(s) 137, 169, 434
AluBI AGCT 2 cut(s) 333, 343
AluI AGCT 2 cut(s) 333, 343
Alw26I GTCTC 3 cut(s) 212, 327, 420
AlwI GGATC 2 cut(s) 85, 116
AoxI GGCC 3 cut(s) 3, 170, 246
ApeKI GCWGC 1 cut(s) 333
ApoI RAATTY 1 cut(s) 240
AsiGI ACCGGT 1 cut(s) 203
Asp700I GAANNNNTTC 2 cut(s) 371, 446
AspS9I GGNCC 1 cut(s) 153
AsuC2I CCSGG 2 cut(s) 306, 390
AsuHPI GGTGA 3 cut(s) 150, 193, 265
AvaII GGWCC 1 cut(s) 153
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 320
BccI CCATC 2 cut(s) 41, 140
BciT130I CCWGG 2 cut(s) 142, 292
BcnI CCSGG 2 cut(s) 306, 390
BcoDI GTCTC 3 cut(s) 212, 327, 420
BfmI CTRYAG 1 cut(s) 328
BisI GCNGC 1 cut(s) 334
BlsI GCNGC 1 cut(s) 335
Bme1390I CCNGG 4 cut(s) 142, 292, 306, 390
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 153
BmrFI CCNGG 4 cut(s) 142, 292, 306, 390
BpuMI CCSGG 2 cut(s) 306, 390
BsaBI GATNNNNATC 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 320
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 72, 433
BsaWI WCCGGW 1 cut(s) 203
BsaXI ACNNNNNCTCC 4 cut(s) 320, 350, 434, 464
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 119
Bse8I GATNNNNATC 1 cut(s) 81
BseBI CCWGG 2 cut(s) 142, 292
BseDI CCNNGG 2 cut(s) 72, 433
BseGI GGATG 2 cut(s) 33, 132
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMI GCAATG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 320
BsgI GTGCAG 1 cut(s) 169
BshFI GGCC 3 cut(s) 5, 172, 248
BshTI ACCGGT 1 cut(s) 203
BsiSI CCGG 7 cut(s) 173, 192, 204, 245, 306, 389, 453
BslI CCNNNNNNNGG 1 cut(s) 195
BsmAI GTCTC 3 cut(s) 212, 327, 420
BsmBI CGTCTC 2 cut(s) 327, 420
BsnI GGCC 3 cut(s) 5, 172, 248
Bso31I GGTCTC 1 cut(s) 212
Bsp143I GATC 3 cut(s) 82, 90, 121
BspACI CCGC 2 cut(s) 276, 438
BspANI GGCC 3 cut(s) 5, 172, 248
BspPI GGATC 2 cut(s) 85, 116
BspTNI GGTCTC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 2 cut(s) 72, 433
BssMI GATC 3 cut(s) 82, 90, 121
BssNI GRCGYC 1 cut(s) 320
Bst2UI CCWGG 2 cut(s) 142, 292
Bst4CI ACNGT 3 cut(s) 58, 129, 162
Bst6I CTCTTC 2 cut(s) 29, 215
BstACI GRCGYC 1 cut(s) 320
BstEII GGTNACC 1 cut(s) 199
BstENI CCTNNNNNAGG 1 cut(s) 193
BstF5I GGATG 2 cut(s) 33, 132
BstKTI GATC 3 cut(s) 85, 93, 124
BstMAI GTCTC 3 cut(s) 212, 327, 420
BstMBI GATC 3 cut(s) 82, 90, 121
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstNI CCWGG 2 cut(s) 142, 292
BstPI GGTNACC 1 cut(s) 199
BstSCI CCNGG 4 cut(s) 140, 290, 304, 388
BstSFI CTRYAG 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 320
BsuRI GGCC 3 cut(s) 5, 172, 248
BtsCI GGATG 2 cut(s) 33, 132
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 1 cut(s) 153
CspAI ACCGGT 1 cut(s) 203
CviJI RGCY 5 cut(s) 5, 172, 248, 333, 343
CviKI_1 RGCY 5 cut(s) 5, 172, 248, 333, 343
DpnI GATC 3 cut(s) 84, 92, 123
DpnII GATC 3 cut(s) 82, 90, 121
EaeI YGGCCR 3 cut(s) 3, 170, 246
Eam1104I CTCTTC 2 cut(s) 29, 215
EarI CTCTTC 2 cut(s) 29, 215
Eco31I GGTCTC 1 cut(s) 212
Eco32I GATATC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 153
Eco91I GGTNACC 1 cut(s) 199
EcoNI CCTNNNNNAGG 1 cut(s) 193
EcoO65I GGTNACC 1 cut(s) 199
EcoRII CCWGG 2 cut(s) 140, 290
EcoRV GATATC 1 cut(s) 397
Esp3I CGTCTC 2 cut(s) 327, 420
FauI CCCGC 1 cut(s) 431
Fnu4HI GCNGC 1 cut(s) 334
FokI GGATG 2 cut(s) 20, 119
Fsp4HI GCNGC 1 cut(s) 334
GluI GCNGC 1 cut(s) 334
HaeIII GGCC 3 cut(s) 5, 172, 248
HapII CCGG 7 cut(s) 173, 192, 204, 245, 306, 389, 453
Hin1I GRCGYC 1 cut(s) 320
HinfI GANTC 1 cut(s) 77
HpaII CCGG 7 cut(s) 173, 192, 204, 245, 306, 389, 453
HphI GGTGA 3 cut(s) 150, 193, 265
Hpy188I TCNGA 4 cut(s) 76, 82, 267, 318
Hpy99I CGWCG 4 cut(s) 322, 380, 415, 461
HpyAV CCTTC 1 cut(s) 272
HpyCH4III ACNGT 3 cut(s) 58, 129, 162
HpyCH4IV ACGT 2 cut(s) 320, 459
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpySE526I ACGT 2 cut(s) 320, 459
Hsp92I GRCGYC 1 cut(s) 320
Kzo9I GATC 3 cut(s) 82, 90, 121
LmnI GCTCC 2 cut(s) 341, 348
Lsp1109I GCAGC 1 cut(s) 320
MaeII ACGT 2 cut(s) 320, 459
MaeIII GTNAC 1 cut(s) 199
MalI GATC 3 cut(s) 84, 92, 123
MboI GATC 3 cut(s) 82, 90, 121
MboII GAAGA 3 cut(s) 16, 19, 202
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 60, 240, 295, 384
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 341
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 2 cut(s) 371, 446
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 333
MspI CCGG 7 cut(s) 173, 192, 204, 245, 306, 389, 453
MspR9I CCNGG 4 cut(s) 142, 292, 306, 390
MvaI CCWGG 2 cut(s) 142, 292
MwoI GCNNNNNNNGC 1 cut(s) 192
NciI CCSGG 2 cut(s) 306, 390
NdeII GATC 3 cut(s) 82, 90, 121
NmeAIII GCCGAG 1 cut(s) 414
NmuCI GTSAC 1 cut(s) 199
PdmI GAANNNNTTC 2 cut(s) 371, 446
PfeI GAWTC 1 cut(s) 77
PfoI TCCNGGA 2 cut(s) 140, 388
PinAI ACCGGT 1 cut(s) 203
PkrI GCNGC 1 cut(s) 335
Psp6I CCWGG 2 cut(s) 140, 290
PspEI GGTNACC 1 cut(s) 199
PspGI CCWGG 2 cut(s) 140, 290
PspPI GGNCC 1 cut(s) 153
PvuII CAGCTG 1 cut(s) 333
SatI GCNGC 1 cut(s) 334
Sau3AI GATC 3 cut(s) 82, 90, 121
Sau96I GGNCC 1 cut(s) 153
ScrFI CCNGG 4 cut(s) 142, 292, 306, 390
SfcI CTRYAG 1 cut(s) 328
SinI GGWCC 1 cut(s) 153
Sse9I AATT 4 cut(s) 60, 240, 295, 384
SsiI CCGC 2 cut(s) 276, 438
StyD4I CCNGG 4 cut(s) 140, 290, 304, 388
TaaI ACNGT 3 cut(s) 58, 129, 162
TaiI ACGT 2 cut(s) 323, 462
TaqI TCGA 2 cut(s) 354, 399
TasI AATT 4 cut(s) 60, 240, 295, 384
TfiI GAWTC 1 cut(s) 77
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 1 cut(s) 333
Tsp45I GTSAC 1 cut(s) 199
TspGWI ACGGA 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 153
XagI CCTNNNNNAGG 1 cut(s) 193
XapI RAATTY 1 cut(s) 240
XmnI GAANNNNTTC 2 cut(s) 371, 446
ZraI GACGTC 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.