Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001321

Physical Location & Seq

Genomic Coordinates Forward (+)

5068587 .. 5071727

Gene Structure 3141 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG066800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2691 bp

ATGACTACACCAACCCCAAAACCCTCTCTCATCCTCCTCATCTTCTTCGTCTTCTTCATCCATGCAAACTCTCAGTCCCTTCAAGACAAGGAATTATCAGTCCTGCTTAAATTAAAGTCATATTGGCTACCTCCACGAGCTTTCAGTCATTGGACTTCATCATCAAACTCTAGTTCCCACTGTGACTGGCCTGAGATCAACTGCACCGGAAACTCCGTCACCGGATTGAATCTCAACACCGTAAACCTCAACCTTCAAGTTCCACCCTTCATTTGTGACCTCAACAACCTCACACACCTTGACCTTGGTAATAACTACCTCCCGGGAGGTTTTCCTTCGTCTCTCTACGACTGCTCCAAGCTAGAGTATCTAGACCTCTCGCAAAACTACTTTGTGGGTACAATTCCTAATGACATCTACAAATTGCCTAAGCTTAAGATCCTCAACCTTGCTGGCAACAACTTCTCCGGTGACATTCCGGCGTCTATTGGGAACTTACAGGAGCTGGCTACTTTGGATATATACATGAACCAGCTCAACGGCTCTGTCCCTGCTGAAATAGGTGACCTCTCCAATCTTGAGCAACTCTGGCTCTCTTGGCTTCCCAAAATGGCGCCATGGAAGCTGCCTTTTAACTTCACCAAGTTGAAAAAGATGAAGATATTGAAGATACGCGAAGCAAATTTGATTGGGGAAATACCAGAATCTATTGGAGAATTGGAAGCACTTGAAGTATTGGATTTGGCGCGGAACAAGTTGAGCGGGAATATACCAAGCGGTGTGTTTCTGTTCAAGAACTTGAGCATTATATATCTGTTCAAGAACAGGCTTTCAGGGGAGATTCCTCAGGTGGTTGAAGCACTCAACTTGAGCATCGTTGACATCTCAGAGAACAATCTCACAGGGCCGATACCACAAGGTTTCGGAAACCTTACCAAGTTGACAGATATGAGTTTGTTCTACAATGGTATTTCAGGTGAGATTCCAGAGAGCATTGGCCGCCTGCCAAATCTTGTGATTTTCAAAATGTTCAACATGAACTTGTCAGGAACAATTCCTCCAGAGCTTGGAAAGCATTCGCTGCTTGAAGATTTCCAGGTTTCGGTGAATAGGCTTACCGGAAAGCTGCCAGACGGCTTGTGTAAAAATGGTAAGCTTGTGGCAGTTGTTGCTTATGAGAATAGTCTCACTGGGGAGCTACCAAGCTCTCTTGGAAATTGTGATAGTCTGCTGGTAGTCAATGTCTATGATAACATGCTATCTGGGGACATTCCTAGTGGTATGTGGAATGCATTGAATTTGAGTTATGTGATGATGAGCAACAATTCGTTCACGGGTGAGCTTCCTGAGAAGATGTCATATAAACTTCAAAGGCTGGCAATCGGAGATAACAAGTTTTCAGGTCAGATTCCAAGAGGGGTGTCTTCCTGTAAGAATCTGCAAGTTTTTTCTGCTGGTAACAACCTCTTCAATGGTAGTATTCCTCAGGAATTAACTACTCTTCCGAGCTTGATCACTCTGACCCTGCATCAGAATCAGCTTAGCGGGCCCCTTCCATCAGATATTGTATCATGGAAGTCACTAAACACTCTTGATCTGCGTAGAAATCAACTCTCCGGACCAATTCCAGAGATACTTGGTGGTTTGCCCGCCCTTACTGAATTGGACCTTTCTGAAAACCAGTTTTCAGGCCAAATTCCAAATCAACTTGGCCATCTGAAACTCAATGAGTTCAACCTCTCTTCAAATCTCCTCTCTGGCGAGATCCCAATTTCATTTGAAAACTCTGCGTATGAGAGAAGCTTCTTGAACAACACTGGTCTCTGTGCAAGCACCAGTGGTGTGAATCTCAATATATGCTCTCAATTGCCAAAGTCCAGCAAGATTTCAATTCGGTCTCTTGCTTTGATCTTAAGTCTAAGCGCGGTGTTGTTCGTGTTGGTTTTGTCCTTATTAATCTTCTTTGTTAGAGGTTACTTGAGGAGGAAGGATGGATCAGACGCAGACTGGAAGCTCGTTGCATTTCAGAGGTTGAATTTCACCATCTCACAAATCTTGTCAGGGTTGATAGAAAGCAATGTGATTGGAAGTGGTGGATCAGGGAGGGTCTATCGTGTACCTGTGAATCGTACAGGTGATGTTGTAGCTGCGAAGAGGATTTGGACCAACAAGAAGATCATGGAGGAGAGGCTCGAAAAAGAGTTTCATGCAGAAGTCAAGATACTGAGCTCAATTCGACATGCTAACATAGTGAAGCTAATGTGCTGCATATCCAAATATGCACATACCAGAAAAGTGAATGAAAAGATCGATGTATATAGTTTCGGGGTCATCCTGCTGGAGTTGGCAACTGGTAAGGAACCCAATGAAGGTGATGAAAACACTTCTCTCGCCGAATGGGCGTGGCGTCATGCTCAAGAAGGCAAACCTATCGACAGTGTTCTGGACCAGGACGTCAAAGAACCCTGTTACTTGGATGAAATGTGCGCTGTTTTCAGACTCGGCATCATGTGCACCGAGACACTTCCTACTAATAGGCCTTCTATGAAAGAGGTTTTGCAGATCTTGGTTCGAACTAGTCCTCCTCCAGTTCGCAGGGAAAAGACTGAATATGCCGCTGCTCCTCTCCTCAAGAACTCGAGGCGAGAGAGAGTTTTGGAAGATCAAGATGGTTTGGCAACGAATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010468 GO:0019222 GO:0022622 GO:0032501 GO:0032502 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

896

Amino Acids

99.17

Weight (kDa)

6.21

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	93 - 130	6.3e-06	Leucine rich repeat
LRR_8	PF13855	96 - 155	3.3e-10	Leucine rich repeat
LRR_14	PF23598	118 - 224	3e-10	Leucine-rich repeat region
LRR_4	PF12799	120 - 160	2.2e-06	Leucine Rich repeats (2 copies)
LRR_14	PF23598	214 - 287	1.9e-06	Leucine-rich repeat region
LRR_8	PF13855	527 - 585	4.3e-07	Leucine rich repeat
Pkinase	PF00069	692 - 761	1e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25930
fragaria_vesca	FvH4_1g06180 FvH4_1g06180 FvH4_1g06220 FvH4_1g06260 FvH4_1g07450 FvH4_1g07450 FvH4_1g07450 FvH4_2g35260
malus_domestica	MD02G1066200.v1.1 MD02G1066300.v1.1 MD02G1066400.v1.1 MD08G1110500.v1.1 MD15G1196900.v1.1
prunus_persica	Prupe.1G444700_v2.0.a1 Prupe.7G218900_v2.0.a1 Prupe.7G219100_v2.0.a1 Prupe.7G219300_v2.0.a1 Prupe.7G219300_v2.0.a1 Prupe.7G219400_v2.0.a1 Prupe.7G219500_v2.0.a1
pyrus_communis	pycom02g05250 pycom08g08890 pycom08g09200 pycom15g08430 pycom15g17590
rosa_chinensis	RchiOBHm_Chr2g0091961 RchiOBHm_Chr6g0306681
rosa_laevigata	RLG00000010774 RLG00000016262 RLG00000016266
rosa_multiflora	Rmu_co7980064.1_g000001 Rmu_sc0005201.1_g000003 Rmu_sc0009216.1_g000004 Rmu_sc0014758.1_g000001 Rmu_sc0017125.1_g000005 Rmu_sc0017648.1_g000001 Rmu_sc0017649.1_g000001 Rmu_sc0017785.1_g000010 Rmu_sc0017785.1_g000011
rosa_roxburghii	Rroxscaffold_2G00149580 Rroxscaffold_7G00161550
rosa_rugosa	Rorug02G0022000 Rorug06G0351600
rosa_samantha	Rh2AG067500 Rh2BG066800 Rh2CG068100 Rh2DG066600 Rh6AG463900 Rh6BG437100 Rh6CG478000 Rh6DG464800
rosa_wichuraiana	Rw2G005350 Rw6G040410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2453
AatII	GACGTC	1 cut(s)	2457
AccB1I	GGYRCC	1 cut(s)	613
AccB7I	CCANNNNNTGG	1 cut(s)	1067
AccBSI	CCGCTC	1 cut(s)	762
AccII	CGCG	3 cut(s)	675, 748, 1925
AccIII	TCCGGA	1 cut(s)	1616
AciI	CCGC	8 cut(s)	748, 762, 777, 1000, 1545, 1650, 1925, 2616
AclWI	GGATC	4 cut(s)	433, 1759, 2002, 2104
AcoI	YGGCCR	2 cut(s)	997, 1711
AcsI	RAATTY	4 cut(s)	682, 1297, 1695, 2035
AcyI	GRCGYC	4 cut(s)	482, 614, 2407, 2454
AfaI	GTAC	3 cut(s)	400, 2118, 2131
AfiI	CCNNNNNNNGG	3 cut(s)	1067, 1102, 2369
AflII	CTTAAG	2 cut(s)	434, 1912
AhlI	ACTAGT	1 cut(s)	2576
AjnI	CCWGG	2 cut(s)	1095, 2448
AloI	GAACNNNNNNTCC	4 cut(s)	1042, 1074, 2566, 2598
Alw21I	GWGCWC	2 cut(s)	2231, 2516
Alw26I	GTCTC	5 cut(s)	345, 1190, 1826, 1902, 2513
Alw44I	GTGCAC	1 cut(s)	2512
AlwI	GGATC	4 cut(s)	433, 1759, 2002, 2104
AlwNI	CAGNNNCTG	1 cut(s)	505
Ama87I	CYCGRG	2 cut(s)	322, 2638
Aor13HI	TCCGGA	1 cut(s)	1616
AoxI	GGCC	7 cut(s)	188, 905, 997, 1547, 1690, 1711, 2537
ApaI	GGGCCC	1 cut(s)	1551
ApaLI	GTGCAC	1 cut(s)	2512
ApeKI	GCWGC	6 cut(s)	625, 1081, 1126, 2147, 2265, 2618
ApoI	RAATTY	4 cut(s)	682, 1297, 1695, 2035
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AseI	ATTAAT	1 cut(s)	1955
Asp700I	GAANNNNTTC	1 cut(s)	1075
AspLEI	GCGC	4 cut(s)	616, 748, 1925, 2489
AspS9I	GGNCC	7 cut(s)	905, 1547, 1548, 1619, 1666, 2163, 2446
AsuC2I	CCSGG	2 cut(s)	323, 324
AsuII	TTCGAA	1 cut(s)	2572
AvaI	CYCGRG	2 cut(s)	322, 2638
AvaII	GGWCC	4 cut(s)	1619, 1666, 2163, 2446
AxyI	CCTNAGG	2 cut(s)	846, 1485
BaeGI	GKGCMC	2 cut(s)	1551, 2516
BalI	TGGCCA	1 cut(s)	1713
BanI	GGYRCC	1 cut(s)	613
BanII	GRGCYC	2 cut(s)	1551, 2231
BarI	GAAGNNNNNNTAC	2 cut(s)	2205, 2237
BauI	CACGAG	1 cut(s)	135
BbsI	GAAGAC	2 cut(s)	43, 1416
Bbv12I	GWGCWC	2 cut(s)	2231, 2516
BbvI	GCAGC	6 cut(s)	612, 1068, 1113, 2134, 2252, 2605
BccI	CCATC	5 cut(s)	1564, 1722, 1985, 2051, 2663
BceAI	ACGGC	2 cut(s)	556, 1150
BcgI	CGANNNNNNTGC	2 cut(s)	2413, 2447
BciT130I	CCWGG	2 cut(s)	1097, 2450
BclI	TGATCA	1 cut(s)	1512
BcnI	CCSGG	2 cut(s)	323, 324
BcoDI	GTCTC	5 cut(s)	345, 1190, 1826, 1902, 2513
BcuI	ACTAGT	1 cut(s)	2576
BfaI	CTAG	5 cut(s)	171, 362, 371, 1275, 2577
BfoI	RGCGCY	1 cut(s)	617
BfrI	CTTAAG	2 cut(s)	434, 1912
BglI	GCCNNNNNGGC	1 cut(s)	2399
BglII	AGATCT	1 cut(s)	2562
BisI	GCNGC	8 cut(s)	626, 1000, 1082, 1127, 2148, 2266, 2616, 2619
BlpI	GCTNAGC	1 cut(s)	1541
BlsI	GCNGC	8 cut(s)	627, 1001, 1083, 1128, 2149, 2267, 2617, 2620
Bme1390I	CCNGG	4 cut(s)	323, 324, 1097, 2450
Bme18I	GGWCC	4 cut(s)	1619, 1666, 2163, 2446
BmeT110I	CYCGRG	2 cut(s)	322, 2638
BmgT120I	GGNCC	7 cut(s)	905, 1547, 1548, 1619, 1666, 2163, 2446
BmiI	GGNNCC	4 cut(s)	615, 1549, 1550, 2361
BmrFI	CCNGG	4 cut(s)	323, 324, 1097, 2450
BmrI	ACTGGG	1 cut(s)	1200
BmsI	GCATC	3 cut(s)	882, 1537, 2514
BmuI	ACTGGG	1 cut(s)	1200
BpiI	GAAGAC	2 cut(s)	43, 1416
BpmI	CTGGAG	3 cut(s)	1044, 2360, 2571
Bpu10I	CCTNAGC	1 cut(s)	429
Bpu1102I	GCTNAGC	1 cut(s)	1541
Bpu14I	TTCGAA	1 cut(s)	2572
BpuEI	CTTGAG	6 cut(s)	599, 820, 889, 1999, 2400, 2615
BpuMI	CCSGG	2 cut(s)	323, 324
Bsa29I	ATCGAT	1 cut(s)	2310
BsaHI	GRCGYC	4 cut(s)	482, 614, 2407, 2454
BsaI	GGTCTC	2 cut(s)	1826, 1902
BsaJI	CCNNGG	3 cut(s)	304, 322, 617
BsaWI	WCCGGW	5 cut(s)	206, 221, 467, 1118, 1616
BsaXI	ACNNNNNCTCC	8 cut(s)	338, 368, 449, 479, 1042, 1072, 2566, 2596
Bsc4I	CCNNNNNNNGG	3 cut(s)	1067, 1102, 2369
Bse1I	ACTGG	8 cut(s)	191, 1195, 1681, 1822, 1836, 2012, 2356, 2588
Bse21I	CCTNAGG	2 cut(s)	846, 1485
Bse3DI	GCAATG	1 cut(s)	2083
BseAI	TCCGGA	1 cut(s)	1616
BseBI	CCWGG	2 cut(s)	1097, 2450
BseCI	ATCGAT	1 cut(s)	2310
BseDI	CCNNGG	3 cut(s)	304, 322, 617
BseGI	GGATG	5 cut(s)	30, 57, 1996, 2331, 2482
BseLI	CCNNNNNNNGG	3 cut(s)	1067, 1102, 2369
BseMI	GCAATG	1 cut(s)	2083
BseMII	CTCAG	7 cut(s)	86, 183, 860, 900, 1338, 1499, 2216
BseNI	ACTGG	8 cut(s)	191, 1195, 1681, 1822, 1836, 2012, 2356, 2588
BseRI	GAGGAG	7 cut(s)	26, 1742, 1996, 2198, 2574, 2613, 2618
BseSI	GKGCMC	2 cut(s)	1551, 2516
BseXI	GCAGC	6 cut(s)	612, 1068, 1113, 2134, 2252, 2605
BsgI	GTGCAG	1 cut(s)	187
Bsh1236I	CGCG	3 cut(s)	675, 748, 1925
BshFI	GGCC	7 cut(s)	190, 907, 999, 1549, 1692, 1713, 2539
BshNI	GGYRCC	1 cut(s)	613
BshVI	ATCGAT	1 cut(s)	2310
BsiHKAI	GWGCWC	2 cut(s)	2231, 2516
BsiHKCI	CYCGRG	2 cut(s)	322, 2638
BsiSI	CCGG	7 cut(s)	207, 222, 323, 468, 479, 1119, 1617
BslFI	GGGAC	3 cut(s)	61, 533, 1280
BslI	CCNNNNNNNGG	3 cut(s)	1067, 1102, 2369
BsmAI	GTCTC	5 cut(s)	345, 1190, 1826, 1902, 2513
BsmBI	CGTCTC	1 cut(s)	345
BsmFI	GGGAC	3 cut(s)	61, 533, 1280
BsmI	GAATGC	2 cut(s)	1075, 1294
BsnI	GGCC	7 cut(s)	190, 907, 999, 1549, 1692, 1713, 2539
Bso31I	GGTCTC	2 cut(s)	1826, 1902
BsoBI	CYCGRG	2 cut(s)	322, 2638
Bsp119I	TTCGAA	1 cut(s)	2572
Bsp120I	GGGCCC	1 cut(s)	1547
Bsp1286I	GDGCHC	3 cut(s)	1551, 2231, 2516
Bsp13I	TCCGGA	1 cut(s)	1616
Bsp1720I	GCTNAGC	1 cut(s)	1541
Bsp19I	CCATGG	1 cut(s)	617
BspACI	CCGC	8 cut(s)	748, 762, 777, 1000, 1545, 1650, 1925, 2616
BspANI	GGCC	7 cut(s)	190, 907, 999, 1549, 1692, 1713, 2539
BspCNI	CTCAG	7 cut(s)	85, 184, 859, 899, 1339, 1498, 2217
BspDI	ATCGAT	1 cut(s)	2310
BspEI	TCCGGA	1 cut(s)	1616
BspFNI	CGCG	3 cut(s)	675, 748, 1925
BspLI	GGNNCC	4 cut(s)	615, 1549, 1550, 2361
BspPI	GGATC	4 cut(s)	433, 1759, 2002, 2104
BspT104I	TTCGAA	1 cut(s)	2572
BspT107I	GGYRCC	1 cut(s)	613
BspTI	CTTAAG	2 cut(s)	434, 1912
BspTNI	GGTCTC	2 cut(s)	1826, 1902
BsrBI	CCGCTC	1 cut(s)	762
BsrDI	GCAATG	1 cut(s)	2083
BsrI	ACTGG	8 cut(s)	191, 1195, 1681, 1822, 1836, 2012, 2356, 2588
BssECI	CCNNGG	3 cut(s)	304, 322, 617
BssNI	GRCGYC	4 cut(s)	482, 614, 2407, 2454
BssSI	CACGAG	1 cut(s)	135
BssT1I	CCWWGG	2 cut(s)	304, 617
Bst2BI	CACGAG	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	1097, 2450
Bst4CI	ACNGT	3 cut(s)	182, 241, 2438
Bst6I	CTCTTC	4 cut(s)	1472, 1506, 1747, 2147
BstACI	GRCGYC	4 cut(s)	482, 614, 2407, 2454
BstAFI	CTTAAG	2 cut(s)	434, 1912
BstAPI	GCANNNNNTGC	3 cut(s)	1081, 1169, 2511
BstBI	TTCGAA	1 cut(s)	2572
BstC8I	GCNNGC	7 cut(s)	454, 507, 1004, 1377, 1547, 1650, 1831
BstDSI	CCRYGG	1 cut(s)	617
BstEII	GGTNACC	1 cut(s)	563
BstF5I	GGATG	5 cut(s)	30, 57, 1996, 2331, 2482
BstFNI	CGCG	3 cut(s)	675, 748, 1925
BstH2I	RGCGCY	1 cut(s)	617
BstHHI	GCGC	4 cut(s)	616, 748, 1925, 2489
BstMAI	GTCTC	5 cut(s)	345, 1190, 1826, 1902, 2513
BstNI	CCWGG	2 cut(s)	1097, 2450
BstNSI	RCATGY	2 cut(s)	1258, 2243
BstPI	GGTNACC	1 cut(s)	563
BstSCI	CCNGG	4 cut(s)	321, 322, 1095, 2448
BstSLI	GKGCMC	2 cut(s)	1551, 2516
BstUI	CGCG	3 cut(s)	675, 748, 1925
BstV1I	GCAGC	6 cut(s)	612, 1068, 1113, 2134, 2252, 2605
BstV2I	GAAGAC	2 cut(s)	43, 1416
BstX2I	RGATCY	3 cut(s)	438, 1764, 2562
BstYI	RGATCY	3 cut(s)	438, 1764, 2562
Bsu15I	ATCGAT	1 cut(s)	2310
Bsu36I	CCTNAGG	2 cut(s)	846, 1485
BsuRI	GGCC	7 cut(s)	190, 907, 999, 1549, 1692, 1713, 2539
BsuTUI	ATCGAT	1 cut(s)	2310
BtgI	CCRYGG	1 cut(s)	617
BtsCI	GGATG	5 cut(s)	30, 57, 1996, 2331, 2482
BtsIMutI	CAGTG	5 cut(s)	178, 1188, 1815, 1843, 2443
Cac8I	GCNNGC	7 cut(s)	454, 507, 1004, 1377, 1547, 1650, 1831
CaiI	CAGNNNCTG	1 cut(s)	505
CfoI	GCGC	4 cut(s)	616, 748, 1925, 2489
Cfr13I	GGNCC	7 cut(s)	905, 1547, 1548, 1619, 1666, 2163, 2446
Cfr9I	CCCGGG	1 cut(s)	322
ClaI	ATCGAT	1 cut(s)	2310
CseI	GACGC	3 cut(s)	471, 2009, 2396
Csp6I	GTAC	3 cut(s)	399, 2117, 2130
CviQI	GTAC	3 cut(s)	399, 2117, 2130
DinI	GGCGCC	1 cut(s)	615
DrdI	GACNNNNNNGTC	1 cut(s)	2453
DseDI	GACNNNNNNGTC	1 cut(s)	2453
EaeI	YGGCCR	2 cut(s)	997, 1711
Eam1104I	CTCTTC	4 cut(s)	1472, 1506, 1747, 2147
EarI	CTCTTC	4 cut(s)	1472, 1506, 1747, 2147
Ecl136II	GAGCTC	1 cut(s)	2229
Eco130I	CCWWGG	2 cut(s)	304, 617
Eco147I	AGGCCT	1 cut(s)	2539
Eco24I	GRGCYC	2 cut(s)	1551, 2231
Eco31I	GGTCTC	2 cut(s)	1826, 1902
Eco47I	GGWCC	4 cut(s)	1619, 1666, 2163, 2446
Eco53kI	GAGCTC	1 cut(s)	2229
Eco81I	CCTNAGG	2 cut(s)	846, 1485
Eco88I	CYCGRG	2 cut(s)	322, 2638
Eco91I	GGTNACC	1 cut(s)	563
EcoICRI	GAGCTC	1 cut(s)	2229
EcoO109I	RGGNCCY	1 cut(s)	1548
EcoO65I	GGTNACC	1 cut(s)	563
EcoRII	CCWGG	2 cut(s)	1095, 2448
EcoT14I	CCWWGG	2 cut(s)	304, 617
EcoT22I	ATGCAT	1 cut(s)	1294
EcoT38I	GRGCYC	2 cut(s)	1551, 2231
EgeI	GGCGCC	1 cut(s)	615
EheI	GGCGCC	1 cut(s)	615
ErhI	CCWWGG	2 cut(s)	304, 617
Esp3I	CGTCTC	1 cut(s)	345
FaqI	GGGAC	3 cut(s)	61, 533, 1280
FauI	CCCGC	3 cut(s)	755, 1538, 1657
FbaI	TGATCA	1 cut(s)	1512
Fnu4HI	GCNGC	8 cut(s)	626, 1000, 1082, 1127, 2148, 2266, 2616, 2619
FokI	GGATG	5 cut(s)	17, 44, 2003, 2318, 2489
FriOI	GRGCYC	2 cut(s)	1551, 2231
Fsp4HI	GCNGC	8 cut(s)	626, 1000, 1082, 1127, 2148, 2266, 2616, 2619
FspBI	CTAG	5 cut(s)	171, 362, 371, 1275, 2577
GlaI	GCGC	4 cut(s)	615, 747, 1924, 2488
GluI	GCNGC	8 cut(s)	626, 1000, 1082, 1127, 2148, 2266, 2616, 2619
GsuI	CTGGAG	3 cut(s)	1044, 2360, 2571
HaeII	RGCGCY	1 cut(s)	617
HaeIII	GGCC	7 cut(s)	190, 907, 999, 1549, 1692, 1713, 2539
HapII	CCGG	7 cut(s)	207, 222, 323, 468, 479, 1119, 1617
HgaI	GACGC	3 cut(s)	471, 2009, 2396
HhaI	GCGC	4 cut(s)	616, 748, 1925, 2489
Hin1I	GRCGYC	4 cut(s)	482, 614, 2407, 2454
Hin6I	GCGC	4 cut(s)	614, 746, 1923, 2487
HinP1I	GCGC	4 cut(s)	614, 746, 1923, 2487
HincII	GTYRAC	2 cut(s)	880, 942
HindII	GTYRAC	2 cut(s)	880, 942
HindIII	AAGCTT	3 cut(s)	431, 1154, 1801
HpaII	CCGG	7 cut(s)	207, 222, 323, 468, 479, 1119, 1617
Hpy166II	GTNNAC	6 cut(s)	244, 880, 942, 1332, 2117, 2514
Hpy8I	GTNNAC	6 cut(s)	244, 880, 942, 1332, 2117, 2514
HpyAV	CCTTC	9 cut(s)	89, 263, 277, 345, 1562, 1981, 2363, 2414, 2550
HpyCH4III	ACNGT	3 cut(s)	182, 241, 2438
HpyCH4IV	ACGT	1 cut(s)	2454
HpySE526I	ACGT	1 cut(s)	2454
Hsp92I	GRCGYC	4 cut(s)	482, 614, 2407, 2454
HspAI	GCGC	4 cut(s)	614, 746, 1923, 2487
KasI	GGCGCC	1 cut(s)	613
Kpn2I	TCCGGA	1 cut(s)	1616
Ksp22I	TGATCA	1 cut(s)	1512
LmnI	GCTCC	4 cut(s)	359, 502, 1195, 2626
Lsp1109I	GCAGC	6 cut(s)	612, 1068, 1113, 2134, 2252, 2605
LweI	GCATC	3 cut(s)	882, 1537, 2514
MaeI	CTAG	5 cut(s)	171, 362, 371, 1275, 2577
MaeII	ACGT	1 cut(s)	2454
MaeIII	GTNAC	9 cut(s)	182, 217, 275, 470, 563, 1457, 1578, 1973, 2468
MbiI	CCGCTC	1 cut(s)	762
MfeI	CAATTG	1 cut(s)	1865
MflI	RGATCY	3 cut(s)	438, 1764, 2562
MhlI	GDGCHC	3 cut(s)	1551, 2231, 2516
MlsI	TGGCCA	1 cut(s)	1713
MluNI	TGGCCA	1 cut(s)	1713
Mly113I	GGCGCC	1 cut(s)	614
MlyI	GAGTC	1 cut(s)	2493
Mox20I	TGGCCA	1 cut(s)	1713
Mph1103I	ATGCAT	1 cut(s)	1294
MroI	TCCGGA	1 cut(s)	1616
MroXI	GAANNNNTTC	1 cut(s)	1075
MscI	TGGCCA	1 cut(s)	1713
MseI	TTAA	7 cut(s)	108, 113, 435, 633, 1493, 1913, 1955
Msp20I	TGGCCA	1 cut(s)	1713
MspA1I	CMGCKG	1 cut(s)	2618
MspCI	CTTAAG	2 cut(s)	434, 1912
MspI	CCGG	7 cut(s)	207, 222, 323, 468, 479, 1119, 1617
MspR9I	CCNGG	4 cut(s)	323, 324, 1097, 2450
MunI	CAATTG	1 cut(s)	1865
Mva1269I	GAATGC	2 cut(s)	1075, 1294
MvaI	CCWGG	2 cut(s)	1097, 2450
MvnI	CGCG	3 cut(s)	675, 748, 1925
NarI	GGCGCC	1 cut(s)	614
NciI	CCSGG	2 cut(s)	323, 324
NcoI	CCATGG	1 cut(s)	617
NlaIV	GGNNCC	4 cut(s)	615, 1549, 1550, 2361
NmeAIII	GCCGAG	1 cut(s)	2481
NmuCI	GTSAC	6 cut(s)	182, 217, 275, 470, 563, 1578
NsiI	ATGCAT	1 cut(s)	1294
NspI	RCATGY	2 cut(s)	1258, 2243
NspV	TTCGAA	1 cut(s)	2572
PaeR7I	CTCGAG	1 cut(s)	2638
PceI	AGGCCT	1 cut(s)	2539
PctI	GAATGC	2 cut(s)	1075, 1294
PdmI	GAANNNNTTC	1 cut(s)	1075
PfeI	GAWTC	9 cut(s)	229, 704, 841, 982, 1408, 1435, 1534, 1846, 2125
PflMI	CCANNNNNTGG	1 cut(s)	1067
PkrI	GCNGC	8 cut(s)	627, 1001, 1083, 1128, 2149, 2267, 2617, 2620
PleI	GAGTC	1 cut(s)	2493
PluTI	GGCGCC	1 cut(s)	617
PpsI	GAGTC	1 cut(s)	2493
PshBI	ATTAAT	1 cut(s)	1955
Psp124BI	GAGCTC	1 cut(s)	2231
Psp6I	CCWGG	2 cut(s)	1095, 2448
PspEI	GGTNACC	1 cut(s)	563
PspGI	CCWGG	2 cut(s)	1095, 2448
PspN4I	GGNNCC	4 cut(s)	615, 1549, 1550, 2361
PspOMI	GGGCCC	1 cut(s)	1547
PspPI	GGNCC	7 cut(s)	905, 1547, 1548, 1619, 1666, 2163, 2446
PspXI	VCTCGAGB	1 cut(s)	2638
PstNI	CAGNNNCTG	1 cut(s)	505
PsuI	RGATCY	3 cut(s)	438, 1764, 2562
RsaI	GTAC	3 cut(s)	400, 2118, 2131
RsaNI	GTAC	3 cut(s)	399, 2117, 2130
SacI	GAGCTC	1 cut(s)	2231
SaqAI	TTAA	7 cut(s)	108, 113, 435, 633, 1493, 1913, 1955
SatI	GCNGC	8 cut(s)	626, 1000, 1082, 1127, 2148, 2266, 2616, 2619
Sau96I	GGNCC	7 cut(s)	905, 1547, 1548, 1619, 1666, 2163, 2446
SchI	GAGTC	1 cut(s)	2493
ScrFI	CCNGG	4 cut(s)	323, 324, 1097, 2450
SduI	GDGCHC	3 cut(s)	1551, 2231, 2516
SfaNI	GCATC	3 cut(s)	882, 1537, 2514
SfoI	GGCGCC	1 cut(s)	615
Sfr274I	CTCGAG	1 cut(s)	2638
SfuI	TTCGAA	1 cut(s)	2572
SinI	GGWCC	4 cut(s)	1619, 1666, 2163, 2446
SlaI	CTCGAG	1 cut(s)	2638
SmaI	CCCGGG	1 cut(s)	324
SmlI	CTYRAG	9 cut(s)	434, 578, 799, 868, 1912, 1978, 2415, 2630, 2638
SmoI	CTYRAG	9 cut(s)	434, 578, 799, 868, 1912, 1978, 2415, 2630, 2638
SpeI	ACTAGT	1 cut(s)	2576
SseBI	AGGCCT	1 cut(s)	2539
SsiI	CCGC	8 cut(s)	748, 762, 777, 1000, 1545, 1650, 1925, 2616
SspDI	GGCGCC	1 cut(s)	613
SspMI	CTAG	5 cut(s)	171, 362, 371, 1275, 2577
SstI	GAGCTC	1 cut(s)	2231
StuI	AGGCCT	1 cut(s)	2539
StyD4I	CCNGG	4 cut(s)	321, 322, 1095, 2448
StyI	CCWWGG	2 cut(s)	304, 617
TaaI	ACNGT	3 cut(s)	182, 241, 2438
TaiI	ACGT	1 cut(s)	2457
TaqI	TCGA	6 cut(s)	2193, 2236, 2310, 2433, 2572, 2639
TaqII	GACCGA	1 cut(s)	1884
TauI	GCSGC	2 cut(s)	1002, 2618
TfiI	GAWTC	9 cut(s)	229, 704, 841, 982, 1408, 1435, 1534, 1846, 2125
Tru1I	TTAA	7 cut(s)	108, 113, 435, 633, 1493, 1913, 1955
Tru9I	TTAA	7 cut(s)	108, 113, 435, 633, 1493, 1913, 1955
TscAI	CASTG	5 cut(s)	185, 1195, 1822, 1843, 2443
TseFI	GTSAC	6 cut(s)	182, 217, 275, 470, 563, 1578
TseI	GCWGC	6 cut(s)	625, 1081, 1126, 2147, 2265, 2618
Tsp45I	GTSAC	6 cut(s)	182, 217, 275, 470, 563, 1578
TspGWI	ACGGA	1 cut(s)	205
TspMI	CCCGGG	1 cut(s)	322
TspRI	CASTG	5 cut(s)	185, 1195, 1822, 1843, 2443
Van91I	CCANNNNNTGG	1 cut(s)	1067
Vha464I	CTTAAG	2 cut(s)	434, 1912
VneI	GTGCAC	1 cut(s)	2512
VpaK11BI	GGWCC	4 cut(s)	1619, 1666, 2163, 2446
VspI	ATTAAT	1 cut(s)	1955
XapI	RAATTY	4 cut(s)	682, 1297, 1695, 2035
XbaI	TCTAGA	1 cut(s)	370
XceI	RCATGY	2 cut(s)	1258, 2243
XhoI	CTCGAG	1 cut(s)	2638
XmaI	CCCGGG	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	1075
XspI	CTAG	5 cut(s)	171, 362, 371, 1275, 2577
ZraI	GACGTC	1 cut(s)	2455
Zsp2I	ATGCAT	1 cut(s)	1294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.