Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009216.1

Orthogroup ID

OG0001321

Physical Location & Seq

Genomic Coordinates Reverse (-)

9825 .. 12965

Gene Structure 3141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009216.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3045 bp

atgactacactaaccccgaaaccttctctcattttccgcaccttcttcatcttcttcatccatgcaaactctcagtcccttcaggacaaggaattatcagtcctgcttgaattaaagtcatattggctacctccacgagctttcagtcattggacttcatcatcagactctggttcccactgtaactggcctgagatcaactgcaccggaaactccgtcaccggattgaatctcaacaccgtaaacctcaaccttcaagttccacccttcatttgtgacctcaacaacctcacacaccttgaccttggtaataactacctcccgggaggttttccttcgtctctctacgactgccccaagctagagtatctagacctctcgcaaaactactttgtgggtacaattcctaaagacatctacagattgcctaagcttaagatcctcaaccttgctggcaacaacttctccggtgacattccggcgtctattgggaacttacaggagctggctactttggatatatacatgaaccagttcaacggctctgtccctgctgaaataggtgacctctccaatcttgagcaactctggctctcttggcttcccaaaatggcgccatggaagctgccttttaacttcaccaagttgaaaaagatgaagatattgaagatacgcgaagcaaatttgattggggaaataccagaatctattggagaattggaagcacttgaagtattggatttggcgcggaacaagttgagcgggaatataccaagcggtgtgtttctgttgaagaatttgagcagtatatatctgttcaagaacagcctttcaggggagattcctcaagtggttgaagcactcaacttgagcatcattgacatctcagagaacaatctcacagggccgataccacaaggtttcggaaaccttaacaagttaacagatatgagtttgttctacaatggtatttcaggtgagattccagagagcattggcctcctgccaaatcttgtgattttcaaaatgttcaacatgaacttgtcaggaacaattcctccagagcttggaaagcattcgctgcttgaagatttccaggtttcggtgaataggcttaccggaaagctgccagacggcttgtgtaaaaatggtaagcttgtggcagttgttgcttatgagaatagtctcactggggagctaccaagctctcttggaaattgtgatagtctgctgatagtcaatgtctatgataacatgctatctggggacattcctagtggtatgtggaatgcattgaatttgagttatgtgatgatgagcaaaaattcgttcacgggtgagcttcctgagaagatgtcatataatcttcaaaggctggaaatcggagataacaagttttcaggtcagattccaagaggggtgtcttcctgtaagaatctgcaagttttttatgctggtaacaacctcttcaatggtagtattcctcaggaattaactactcttccgcgcttgatgactctgaccctgcatcagaatcagcttagcgggccacttccatcagatattgtatcatggaaatcactaaacactcttgatctgcgtagaaatcaactctccggaccaattccagagatacttggtggtttgcccgcccttactgaattggacctttctgaaaaccagttttcaggccaaattccaaatcaacttggccatctgaaactcaatgagttcaacctctcttcaaatctcctctctggcgagatcccaatttcatttgaaaactctgcgtatgagagaagcttcttgaacaacaccggtctctgtgcaagcaccagtggtgtgaatctcaatatatgctctcaatcgccaaagtccagcaagatttcaattcggtctcttgctttgatcttaagtctaagcgcagtgttgttcgtgttggttttgtccttattaatcttctttgttagaggttacttgaggaggaaggatggatcagacgcagactggaagctcgttgcatttcagaggttgaatttcaccatctcacaaatcttgtcagggttgatagaaagcaatgtgattggaagtggtggatcagggagggtctatcgtgtacctgtgaatcgtacaggtgatgttgtagctgcgaagaggatttggaccaacaagaagatcatggaggagaggcttgaaaaagagtttaatgcagaagtcaagatactgagctcaattcgacatgctaacatagtgaagctaatgtgctgcatatccagtgagacttcgaaacttcttgtatatgagtacttagacaatcgaagcctagatcgatggttgcacaagaaaaacaggccattcctatccaacctctctagttcagtccatcatgttgttctggactggcctaagaggttgcagattgcagtgggagctgctaagggcctctgctatatgcatcatgactgtgttccacccgttgtgcatcgagacgtgaaatcaagtaacattttattggactctgatttcaacgcaaaaatagcagattttggtctggccaagatgttggtcaagcaaggagaccttgccacaatgtcagctgttgctggttcctttggctacatggctccagaatatgcacataccagaagagtgaatgaaaagatcgatgtatatagtttcggggtcatcctgctggagttggcaactggtagggaacccaatgaaggtgatgaaaacacttctctcgccgaatgggcgtggcgtggtgctcaagaaggcaaacctatcgccagtgctctggaccaggacgtcaaagaaccctgttacttggatgaaatgtgcgctgttttcagactcggcatcatgtgcaccgagacacttcctactaataggccttctatgaaggaggttctgcagatcttggttcgaacttgtcctccaccagttcgcagggaaaagactgaatatgccgctgctcctctcctcaagaactcgaggcgcgagagagttttggaagatcaggatggtttggcaacgaatgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010468 GO:0019222 GO:0022622 GO:0032501 GO:0032502 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

1014

Amino Acids

112.42

Weight (kDa)

6.37

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25930
fragaria_vesca	FvH4_1g06180 FvH4_1g06180 FvH4_1g06220 FvH4_1g06260 FvH4_1g07450 FvH4_1g07450 FvH4_1g07450 FvH4_2g35260
malus_domestica	MD02G1066200.v1.1 MD02G1066300.v1.1 MD02G1066400.v1.1 MD08G1110500.v1.1 MD15G1196900.v1.1
prunus_persica	Prupe.1G444700_v2.0.a1 Prupe.7G218900_v2.0.a1 Prupe.7G219100_v2.0.a1 Prupe.7G219300_v2.0.a1 Prupe.7G219300_v2.0.a1 Prupe.7G219400_v2.0.a1 Prupe.7G219500_v2.0.a1
pyrus_communis	pycom02g05250 pycom08g08890 pycom08g09200 pycom15g08430 pycom15g17590
rosa_chinensis	RchiOBHm_Chr2g0091961 RchiOBHm_Chr6g0306681
rosa_laevigata	RLG00000010774 RLG00000016262 RLG00000016266
rosa_multiflora	Rmu_co7980064.1_g000001 Rmu_sc0005201.1_g000003 Rmu_sc0009216.1_g000004 Rmu_sc0014758.1_g000001 Rmu_sc0017125.1_g000005 Rmu_sc0017648.1_g000001 Rmu_sc0017649.1_g000001 Rmu_sc0017785.1_g000010 Rmu_sc0017785.1_g000011
rosa_roxburghii	Rroxscaffold_2G00149580 Rroxscaffold_7G00161550
rosa_rugosa	Rorug02G0022000 Rorug06G0351600
rosa_samantha	Rh2AG067500 Rh2BG066800 Rh2CG068100 Rh2DG066600 Rh6AG463900 Rh6BG437100 Rh6CG478000 Rh6DG464800
rosa_wichuraiana	Rw2G005350 Rw6G040410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2807
AatII	GACGTC	1 cut(s)	2811
AccB1I	GGYRCC	1 cut(s)	613
AccB7I	CCANNNNNTGG	1 cut(s)	1067
AccBSI	CCGCTC	1 cut(s)	762
AccII	CGCG	4 cut(s)	675, 748, 1507, 3000
AccIII	TCCGGA	1 cut(s)	1616
AciI	CCGC	8 cut(s)	37, 748, 762, 777, 1505, 1545, 1650, 2970
AclWI	GGATC	4 cut(s)	433, 1759, 2002, 2104
AcoI	YGGCCR	2 cut(s)	1711, 2553
AcsI	RAATTY	6 cut(s)	682, 796, 1297, 1324, 1695, 2035
AcuI	CTGAAG	1 cut(s)	65
AcyI	GRCGYC	3 cut(s)	482, 614, 2808
AfaI	GTAC	4 cut(s)	400, 2118, 2131, 2306
AfiI	CCNNNNNNNGG	4 cut(s)	835, 1067, 1102, 2723
AflII	CTTAAG	2 cut(s)	434, 1912
AgeI	ACCGGT	1 cut(s)	1817
AjiI	CACGTC	1 cut(s)	2491
AjnI	CCWGG	2 cut(s)	1095, 2802
AloI	GAACNNNNNNTCC	4 cut(s)	1042, 1074, 2920, 2952
Alw21I	GWGCWC	4 cut(s)	2231, 2770, 2797, 2870
Alw26I	GTCTC	8 cut(s)	345, 1190, 1826, 1902, 2273, 2481, 2571, 2867
Alw44I	GTGCAC	1 cut(s)	2866
AlwI	GGATC	4 cut(s)	433, 1759, 2002, 2104
AlwNI	CAGNNNCTG	2 cut(s)	170, 505
Ama87I	CYCGRG	2 cut(s)	322, 2992
Aor13HI	TCCGGA	1 cut(s)	1616
ApaLI	GTGCAC	1 cut(s)	2866
ApeKI	GCWGC	7 cut(s)	625, 1081, 1126, 2147, 2265, 2432, 2972
ApoI	RAATTY	6 cut(s)	682, 796, 1297, 1324, 1695, 2035
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AseI	ATTAAT	1 cut(s)	1955
AsiGI	ACCGGT	1 cut(s)	1817
Asp700I	GAANNNNTTC	2 cut(s)	533, 1075
AspLEI	GCGC	6 cut(s)	616, 748, 1509, 1925, 2843, 3000
AspS9I	GGNCC	7 cut(s)	905, 1547, 1619, 1666, 2163, 2440, 2800
AsuC2I	CCSGG	2 cut(s)	323, 324
AsuII	TTCGAA	2 cut(s)	2285, 2926
AvaI	CYCGRG	2 cut(s)	322, 2992
AvaII	GGWCC	4 cut(s)	1619, 1666, 2163, 2800
AxyI	CCTNAGG	1 cut(s)	1485
BaeGI	GKGCMC	1 cut(s)	2870
BalI	TGGCCA	2 cut(s)	1713, 2555
BanI	GGYRCC	1 cut(s)	613
BanII	GRGCYC	1 cut(s)	2231
BarI	GAAGNNNNNNTAC	2 cut(s)	2205, 2237
BauI	CACGAG	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	1416
Bbv12I	GWGCWC	4 cut(s)	2231, 2770, 2797, 2870
BbvI	GCAGC	7 cut(s)	612, 1068, 1113, 2134, 2252, 2419, 2959
BccI	CCATC	7 cut(s)	1564, 1722, 1985, 2051, 2325, 2391, 3017
BceAI	ACGGC	2 cut(s)	556, 1150
BcgI	CGANNNNNNTGC	2 cut(s)	2767, 2801
BciT130I	CCWGG	2 cut(s)	1097, 2804
BcnI	CCSGG	2 cut(s)	323, 324
BcoDI	GTCTC	8 cut(s)	345, 1190, 1826, 1902, 2273, 2481, 2571, 2867
BfaI	CTAG	5 cut(s)	362, 371, 1275, 2324, 2373
BfmI	CTRYAG	2 cut(s)	418, 2912
BfoI	RGCGCY	1 cut(s)	617
BfrI	CTTAAG	2 cut(s)	434, 1912
BglI	GCCNNNNNGGC	1 cut(s)	2753
BglII	AGATCT	1 cut(s)	2916
BisI	GCNGC	8 cut(s)	626, 1082, 1127, 2148, 2266, 2433, 2970, 2973
BlpI	GCTNAGC	1 cut(s)	1541
BlsI	GCNGC	8 cut(s)	627, 1083, 1128, 2149, 2267, 2434, 2971, 2974
BmcAI	AGTACT	1 cut(s)	2306
Bme1390I	CCNGG	4 cut(s)	323, 324, 1097, 2804
Bme18I	GGWCC	4 cut(s)	1619, 1666, 2163, 2800
BmeT110I	CYCGRG	2 cut(s)	322, 2992
BmgBI	CACGTC	1 cut(s)	2491
BmgT120I	GGNCC	7 cut(s)	905, 1547, 1619, 1666, 2163, 2440, 2800
BmiI	GGNNCC	5 cut(s)	175, 615, 2608, 2625, 2715
BmrFI	CCNGG	4 cut(s)	323, 324, 1097, 2804
BmrI	ACTGGG	1 cut(s)	1200
BmsI	GCATC	5 cut(s)	882, 1537, 2464, 2491, 2868
BmuI	ACTGGG	1 cut(s)	1200
BpiI	GAAGAC	1 cut(s)	1416
BpmI	CTGGAG	3 cut(s)	1044, 2610, 2714
Bpu10I	CCTNAGC	2 cut(s)	429, 2436
Bpu1102I	GCTNAGC	1 cut(s)	1541
Bpu14I	TTCGAA	2 cut(s)	2285, 2926
BpuEI	CTTGAG	6 cut(s)	599, 831, 889, 1999, 2754, 2969
BpuMI	CCSGG	2 cut(s)	323, 324
Bsa29I	ATCGAT	2 cut(s)	2329, 2664
BsaHI	GRCGYC	3 cut(s)	482, 614, 2808
BsaI	GGTCTC	3 cut(s)	1826, 1902, 2571
BsaJI	CCNNGG	3 cut(s)	304, 322, 617
BsaWI	WCCGGW	6 cut(s)	206, 221, 467, 1118, 1616, 1817
BsaXI	ACNNNNNCTCC	6 cut(s)	449, 479, 1042, 1072, 2920, 2950
Bsc4I	CCNNNNNNNGG	4 cut(s)	835, 1067, 1102, 2723
Bse118I	RCCGGY	1 cut(s)	1817
Bse21I	CCTNAGG	1 cut(s)	1485
Bse3DI	GCAATG	1 cut(s)	2083
BseAI	TCCGGA	1 cut(s)	1616
BseBI	CCWGG	2 cut(s)	1097, 2804
BseCI	ATCGAT	2 cut(s)	2329, 2664
BseDI	CCNNGG	3 cut(s)	304, 322, 617
BseGI	GGATG	5 cut(s)	57, 1996, 2685, 2836, 3028
BseLI	CCNNNNNNNGG	4 cut(s)	835, 1067, 1102, 2723
BseMI	GCAATG	1 cut(s)	2083
BseMII	CTCAG	6 cut(s)	86, 183, 900, 1338, 1499, 2216
BseRI	GAGGAG	5 cut(s)	1742, 1996, 2198, 2967, 2972
BseSI	GKGCMC	1 cut(s)	2870
BseXI	GCAGC	7 cut(s)	612, 1068, 1113, 2134, 2252, 2419, 2959
BsgI	GTGCAG	1 cut(s)	187
Bsh1236I	CGCG	4 cut(s)	675, 748, 1507, 3000
BshNI	GGYRCC	1 cut(s)	613
BshTI	ACCGGT	1 cut(s)	1817
BshVI	ATCGAT	2 cut(s)	2329, 2664
BsiHKAI	GWGCWC	4 cut(s)	2231, 2770, 2797, 2870
BsiHKCI	CYCGRG	2 cut(s)	322, 2992
BsiSI	CCGG	8 cut(s)	207, 222, 323, 468, 479, 1119, 1617, 1818
BslFI	GGGAC	3 cut(s)	61, 533, 1280
BslI	CCNNNNNNNGG	4 cut(s)	835, 1067, 1102, 2723
BsmAI	GTCTC	8 cut(s)	345, 1190, 1826, 1902, 2273, 2481, 2571, 2867
BsmBI	CGTCTC	2 cut(s)	345, 2481
BsmFI	GGGAC	3 cut(s)	61, 533, 1280
BsmI	GAATGC	2 cut(s)	1075, 1294
Bso31I	GGTCTC	3 cut(s)	1826, 1902, 2571
BsoBI	CYCGRG	2 cut(s)	322, 2992
Bsp119I	TTCGAA	2 cut(s)	2285, 2926
Bsp1286I	GDGCHC	4 cut(s)	2231, 2770, 2797, 2870
Bsp13I	TCCGGA	1 cut(s)	1616
Bsp1720I	GCTNAGC	1 cut(s)	1541
Bsp19I	CCATGG	1 cut(s)	617
BspACI	CCGC	8 cut(s)	37, 748, 762, 777, 1505, 1545, 1650, 2970
BspCNI	CTCAG	6 cut(s)	85, 184, 899, 1339, 1498, 2217
BspDI	ATCGAT	2 cut(s)	2329, 2664
BspEI	TCCGGA	1 cut(s)	1616
BspFNI	CGCG	4 cut(s)	675, 748, 1507, 3000
BspHI	TCATGA	1 cut(s)	2458
BspLI	GGNNCC	5 cut(s)	175, 615, 2608, 2625, 2715
BspMAI	CTGCAG	1 cut(s)	2916
BspPI	GGATC	4 cut(s)	433, 1759, 2002, 2104
BspT104I	TTCGAA	2 cut(s)	2285, 2926
BspT107I	GGYRCC	1 cut(s)	613
BspTI	CTTAAG	2 cut(s)	434, 1912
BspTNI	GGTCTC	3 cut(s)	1826, 1902, 2571
BsrBI	CCGCTC	1 cut(s)	762
BsrDI	GCAATG	1 cut(s)	2083
BsrFI	RCCGGY	1 cut(s)	1817
BssAI	RCCGGY	1 cut(s)	1817
BssECI	CCNNGG	3 cut(s)	304, 322, 617
BssNI	GRCGYC	3 cut(s)	482, 614, 2808
BssSI	CACGAG	1 cut(s)	135
BssT1I	CCWWGG	2 cut(s)	304, 617
Bst2BI	CACGAG	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	1097, 2804
Bst4CI	ACNGT	3 cut(s)	182, 241, 2465
Bst6I	CTCTTC	5 cut(s)	1472, 1506, 1747, 2147, 2641
BstACI	GRCGYC	3 cut(s)	482, 614, 2808
BstAFI	CTTAAG	2 cut(s)	434, 1912
BstAPI	GCANNNNNTGC	3 cut(s)	1081, 1169, 2865
BstBI	TTCGAA	2 cut(s)	2285, 2926
BstC8I	GCNNGC	5 cut(s)	454, 507, 1547, 1650, 1831
BstDSI	CCRYGG	1 cut(s)	617
BstEII	GGTNACC	1 cut(s)	563
BstF5I	GGATG	5 cut(s)	57, 1996, 2685, 2836, 3028
BstFNI	CGCG	4 cut(s)	675, 748, 1507, 3000
BstH2I	RGCGCY	1 cut(s)	617
BstHHI	GCGC	6 cut(s)	616, 748, 1509, 1925, 2843, 3000
BstMAI	GTCTC	8 cut(s)	345, 1190, 1826, 1902, 2273, 2481, 2571, 2867
BstNI	CCWGG	2 cut(s)	1097, 2804
BstNSI	RCATGY	2 cut(s)	1258, 2243
BstPI	GGTNACC	1 cut(s)	563
BstSCI	CCNGG	4 cut(s)	321, 322, 1095, 2802
BstSFI	CTRYAG	2 cut(s)	418, 2912
BstSLI	GKGCMC	1 cut(s)	2870
BstUI	CGCG	4 cut(s)	675, 748, 1507, 3000
BstV1I	GCAGC	7 cut(s)	612, 1068, 1113, 2134, 2252, 2419, 2959
BstV2I	GAAGAC	1 cut(s)	1416
BstX2I	RGATCY	3 cut(s)	438, 1764, 2916
BstXI	CCANNNNNNTGG	2 cut(s)	2563, 2797
BstYI	RGATCY	3 cut(s)	438, 1764, 2916
Bsu15I	ATCGAT	2 cut(s)	2329, 2664
Bsu36I	CCTNAGG	1 cut(s)	1485
BsuTUI	ATCGAT	2 cut(s)	2329, 2664
BtgI	CCRYGG	1 cut(s)	617
BtrI	CACGTC	1 cut(s)	2491
BtsCI	GGATG	5 cut(s)	57, 1996, 2685, 2836, 3028
BtsI	GCAGTG	2 cut(s)	1932, 2430
BtsIMutI	CAGTG	7 cut(s)	178, 1188, 1843, 1932, 2281, 2430, 2797
Cac8I	GCNNGC	5 cut(s)	454, 507, 1547, 1650, 1831
CaiI	CAGNNNCTG	2 cut(s)	170, 505
CciI	TCATGA	1 cut(s)	2458
CfoI	GCGC	6 cut(s)	616, 748, 1509, 1925, 2843, 3000
Cfr10I	RCCGGY	1 cut(s)	1817
Cfr13I	GGNCC	7 cut(s)	905, 1547, 1619, 1666, 2163, 2440, 2800
Cfr9I	CCCGGG	1 cut(s)	322
ClaI	ATCGAT	2 cut(s)	2329, 2664
CseI	GACGC	2 cut(s)	471, 2009
Csp6I	GTAC	4 cut(s)	399, 2117, 2130, 2305
CspAI	ACCGGT	1 cut(s)	1817
CviQI	GTAC	4 cut(s)	399, 2117, 2130, 2305
DinI	GGCGCC	1 cut(s)	615
DrdI	GACNNNNNNGTC	1 cut(s)	2807
DseDI	GACNNNNNNGTC	1 cut(s)	2807
EaeI	YGGCCR	2 cut(s)	1711, 2553
Eam1104I	CTCTTC	5 cut(s)	1472, 1506, 1747, 2147, 2641
EarI	CTCTTC	5 cut(s)	1472, 1506, 1747, 2147, 2641
Ecl136II	GAGCTC	1 cut(s)	2229
Eco130I	CCWWGG	2 cut(s)	304, 617
Eco147I	AGGCCT	1 cut(s)	2893
Eco24I	GRGCYC	1 cut(s)	2231
Eco31I	GGTCTC	3 cut(s)	1826, 1902, 2571
Eco47I	GGWCC	4 cut(s)	1619, 1666, 2163, 2800
Eco53kI	GAGCTC	1 cut(s)	2229
Eco57I	CTGAAG	1 cut(s)	65
Eco81I	CCTNAGG	1 cut(s)	1485
Eco88I	CYCGRG	2 cut(s)	322, 2992
Eco91I	GGTNACC	1 cut(s)	563
EcoICRI	GAGCTC	1 cut(s)	2229
EcoO109I	RGGNCCY	1 cut(s)	2440
EcoO65I	GGTNACC	1 cut(s)	563
EcoRII	CCWGG	2 cut(s)	1095, 2802
EcoT14I	CCWWGG	2 cut(s)	304, 617
EcoT22I	ATGCAT	2 cut(s)	1294, 2457
EcoT38I	GRGCYC	1 cut(s)	2231
EgeI	GGCGCC	1 cut(s)	615
EheI	GGCGCC	1 cut(s)	615
ErhI	CCWWGG	2 cut(s)	304, 617
Esp3I	CGTCTC	2 cut(s)	345, 2481
FalI	AAGNNNNNCTT	2 cut(s)	2565, 2597
FaqI	GGGAC	3 cut(s)	61, 533, 1280
FauI	CCCGC	3 cut(s)	755, 1538, 1657
Fnu4HI	GCNGC	8 cut(s)	626, 1082, 1127, 2148, 2266, 2433, 2970, 2973
FokI	GGATG	5 cut(s)	44, 2003, 2672, 2843, 3035
FriOI	GRGCYC	1 cut(s)	2231
Fsp4HI	GCNGC	8 cut(s)	626, 1082, 1127, 2148, 2266, 2433, 2970, 2973
FspBI	CTAG	5 cut(s)	362, 371, 1275, 2324, 2373
GlaI	GCGC	6 cut(s)	615, 747, 1508, 1924, 2842, 2999
GluI	GCNGC	8 cut(s)	626, 1082, 1127, 2148, 2266, 2433, 2970, 2973
GsuI	CTGGAG	3 cut(s)	1044, 2610, 2714
HaeII	RGCGCY	1 cut(s)	617
HapII	CCGG	8 cut(s)	207, 222, 323, 468, 479, 1119, 1617, 1818
HgaI	GACGC	2 cut(s)	471, 2009
HhaI	GCGC	6 cut(s)	616, 748, 1509, 1925, 2843, 3000
Hin1I	GRCGYC	3 cut(s)	482, 614, 2808
Hin6I	GCGC	6 cut(s)	614, 746, 1507, 1923, 2841, 2998
HinP1I	GCGC	6 cut(s)	614, 746, 1507, 1923, 2841, 2998
HincII	GTYRAC	1 cut(s)	942
HindII	GTYRAC	1 cut(s)	942
HindIII	AAGCTT	3 cut(s)	431, 1154, 1801
HpaI	GTTAAC	1 cut(s)	942
HpaII	CCGG	8 cut(s)	207, 222, 323, 468, 479, 1119, 1617, 1818
Hpy166II	GTNNAC	5 cut(s)	244, 942, 1332, 2117, 2868
Hpy8I	GTNNAC	5 cut(s)	244, 942, 1332, 2117, 2868
HpyCH4III	ACNGT	3 cut(s)	182, 241, 2465
HpyCH4IV	ACGT	2 cut(s)	2490, 2808
HpySE526I	ACGT	2 cut(s)	2490, 2808
Hsp92I	GRCGYC	3 cut(s)	482, 614, 2808
HspAI	GCGC	6 cut(s)	614, 746, 1507, 1923, 2841, 2998
KasI	GGCGCC	1 cut(s)	613
Kpn2I	TCCGGA	1 cut(s)	1616
KspAI	GTTAAC	1 cut(s)	942
LmnI	GCTCC	5 cut(s)	502, 1195, 2429, 2629, 2980
Lsp1109I	GCAGC	7 cut(s)	612, 1068, 1113, 2134, 2252, 2419, 2959
LweI	GCATC	5 cut(s)	882, 1537, 2464, 2491, 2868
MaeI	CTAG	5 cut(s)	362, 371, 1275, 2324, 2373
MaeII	ACGT	2 cut(s)	2490, 2808
MaeIII	GTNAC	9 cut(s)	182, 217, 275, 470, 563, 1457, 1973, 2501, 2822
MbiI	CCGCTC	1 cut(s)	762
MflI	RGATCY	3 cut(s)	438, 1764, 2916
MhlI	GDGCHC	4 cut(s)	2231, 2770, 2797, 2870
MlsI	TGGCCA	2 cut(s)	1713, 2555
MluNI	TGGCCA	2 cut(s)	1713, 2555
Mly113I	GGCGCC	1 cut(s)	614
MlyI	GAGTC	4 cut(s)	161, 1510, 2510, 2847
MmeI	TCCRAC	1 cut(s)	2388
Mox20I	TGGCCA	2 cut(s)	1713, 2555
Mph1103I	ATGCAT	2 cut(s)	1294, 2457
MroI	TCCGGA	1 cut(s)	1616
MroXI	GAANNNNTTC	2 cut(s)	533, 1075
MscI	TGGCCA	2 cut(s)	1713, 2555
MseI	TTAA	9 cut(s)	113, 435, 633, 933, 941, 1493, 1913, 1955, 2205
MslI	CAYNNNNRTG	1 cut(s)	2463
Msp20I	TGGCCA	2 cut(s)	1713, 2555
MspA1I	CMGCKG	2 cut(s)	2597, 2972
MspCI	CTTAAG	2 cut(s)	434, 1912
MspI	CCGG	8 cut(s)	207, 222, 323, 468, 479, 1119, 1617, 1818
MspR9I	CCNGG	4 cut(s)	323, 324, 1097, 2804
Mva1269I	GAATGC	2 cut(s)	1075, 1294
MvaI	CCWGG	2 cut(s)	1097, 2804
MvnI	CGCG	4 cut(s)	675, 748, 1507, 3000
NarI	GGCGCC	1 cut(s)	614
NciI	CCSGG	2 cut(s)	323, 324
NcoI	CCATGG	1 cut(s)	617
NlaIV	GGNNCC	5 cut(s)	175, 615, 2608, 2625, 2715
NmeAIII	GCCGAG	1 cut(s)	2835
NmuCI	GTSAC	4 cut(s)	217, 275, 470, 563
NsiI	ATGCAT	2 cut(s)	1294, 2457
NspI	RCATGY	2 cut(s)	1258, 2243
NspV	TTCGAA	2 cut(s)	2285, 2926
PaeR7I	CTCGAG	1 cut(s)	2992
PagI	TCATGA	1 cut(s)	2458
PceI	AGGCCT	1 cut(s)	2893
PctI	GAATGC	2 cut(s)	1075, 1294
PdmI	GAANNNNTTC	2 cut(s)	533, 1075
PfeI	GAWTC	9 cut(s)	229, 704, 841, 982, 1408, 1435, 1534, 1846, 2125
PflMI	CCANNNNNTGG	1 cut(s)	1067
PinAI	ACCGGT	1 cut(s)	1817
PkrI	GCNGC	8 cut(s)	627, 1083, 1128, 2149, 2267, 2434, 2971, 2974
PleI	GAGTC	4 cut(s)	161, 1510, 2510, 2847
PluTI	GGCGCC	1 cut(s)	617
PpsI	GAGTC	4 cut(s)	161, 1510, 2510, 2847
PshBI	ATTAAT	1 cut(s)	1955
Psp124BI	GAGCTC	1 cut(s)	2231
Psp6I	CCWGG	2 cut(s)	1095, 2802
PspEI	GGTNACC	1 cut(s)	563
PspGI	CCWGG	2 cut(s)	1095, 2802
PspN4I	GGNNCC	5 cut(s)	175, 615, 2608, 2625, 2715
PspPI	GGNCC	7 cut(s)	905, 1547, 1619, 1666, 2163, 2440, 2800
PspXI	VCTCGAGB	1 cut(s)	2992
PstI	CTGCAG	1 cut(s)	2916
PstNI	CAGNNNCTG	2 cut(s)	170, 505
PsuI	RGATCY	3 cut(s)	438, 1764, 2916
PvuII	CAGCTG	1 cut(s)	2597
RsaI	GTAC	4 cut(s)	400, 2118, 2131, 2306
RsaNI	GTAC	4 cut(s)	399, 2117, 2130, 2305
RseI	CAYNNNNRTG	1 cut(s)	2463
SacI	GAGCTC	1 cut(s)	2231
SaqAI	TTAA	9 cut(s)	113, 435, 633, 933, 941, 1493, 1913, 1955, 2205
SatI	GCNGC	8 cut(s)	626, 1082, 1127, 2148, 2266, 2433, 2970, 2973
Sau96I	GGNCC	7 cut(s)	905, 1547, 1619, 1666, 2163, 2440, 2800
ScaI	AGTACT	1 cut(s)	2306
SchI	GAGTC	4 cut(s)	161, 1510, 2510, 2847
ScrFI	CCNGG	4 cut(s)	323, 324, 1097, 2804
SduI	GDGCHC	4 cut(s)	2231, 2770, 2797, 2870
SfaNI	GCATC	5 cut(s)	882, 1537, 2464, 2491, 2868
SfcI	CTRYAG	2 cut(s)	418, 2912
SfoI	GGCGCC	1 cut(s)	615
Sfr274I	CTCGAG	1 cut(s)	2992
SfuI	TTCGAA	2 cut(s)	2285, 2926
SinI	GGWCC	4 cut(s)	1619, 1666, 2163, 2800
SlaI	CTCGAG	1 cut(s)	2992
SmaI	CCCGGG	1 cut(s)	324
SmiMI	CAYNNNNRTG	1 cut(s)	2463
SmlI	CTYRAG	9 cut(s)	434, 578, 846, 868, 1912, 1978, 2769, 2984, 2992
SmoI	CTYRAG	9 cut(s)	434, 578, 846, 868, 1912, 1978, 2769, 2984, 2992
SseBI	AGGCCT	1 cut(s)	2893
SsiI	CCGC	8 cut(s)	37, 748, 762, 777, 1505, 1545, 1650, 2970
SspDI	GGCGCC	1 cut(s)	613
SspMI	CTAG	5 cut(s)	362, 371, 1275, 2324, 2373
SstI	GAGCTC	1 cut(s)	2231
StuI	AGGCCT	1 cut(s)	2893
StyD4I	CCNGG	4 cut(s)	321, 322, 1095, 2802
StyI	CCWWGG	2 cut(s)	304, 617
TaaI	ACNGT	3 cut(s)	182, 241, 2465
TaiI	ACGT	2 cut(s)	2493, 2811
TaqI	TCGA	8 cut(s)	2236, 2285, 2317, 2329, 2485, 2664, 2926, 2993
TaqII	GACCGA	1 cut(s)	1884
TatI	WGTACW	1 cut(s)	2304
TauI	GCSGC	1 cut(s)	2972
TfiI	GAWTC	9 cut(s)	229, 704, 841, 982, 1408, 1435, 1534, 1846, 2125
Tru1I	TTAA	9 cut(s)	113, 435, 633, 933, 941, 1493, 1913, 1955, 2205
Tru9I	TTAA	9 cut(s)	113, 435, 633, 933, 941, 1493, 1913, 1955, 2205
TscAI	CASTG	7 cut(s)	185, 1195, 1843, 1932, 2281, 2430, 2797
TseFI	GTSAC	4 cut(s)	217, 275, 470, 563
TseI	GCWGC	7 cut(s)	625, 1081, 1126, 2147, 2265, 2432, 2972
Tsp45I	GTSAC	4 cut(s)	217, 275, 470, 563
TspGWI	ACGGA	1 cut(s)	205
TspMI	CCCGGG	1 cut(s)	322
TspRI	CASTG	7 cut(s)	185, 1195, 1843, 1932, 2281, 2430, 2797
Van91I	CCANNNNNTGG	1 cut(s)	1067
Vha464I	CTTAAG	2 cut(s)	434, 1912
VneI	GTGCAC	1 cut(s)	2866
VpaK11BI	GGWCC	4 cut(s)	1619, 1666, 2163, 2800
VspI	ATTAAT	1 cut(s)	1955
XapI	RAATTY	6 cut(s)	682, 796, 1297, 1324, 1695, 2035
XbaI	TCTAGA	1 cut(s)	370
XceI	RCATGY	2 cut(s)	1258, 2243
XhoI	CTCGAG	1 cut(s)	2992
XmaI	CCCGGG	1 cut(s)	322
XmnI	GAANNNNTTC	2 cut(s)	533, 1075
XspI	CTAG	5 cut(s)	362, 371, 1275, 2324, 2373
ZraI	GACGTC	1 cut(s)	2809
ZrmI	AGTACT	1 cut(s)	2306
Zsp2I	ATGCAT	2 cut(s)	1294, 2457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.