FvH4_1g06680

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
3526022 .. 3530139
4118 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06680.t1

Sequence Viewer

Length: 1563 bp
ATGGCAGTGGAGAAAGTTGGAATAGCAAATTATAGTTTTACGACGCAAAATGTTAGCACAAGCAAAGTTGATCTTACAAGTTTGGGAACTGGTGACATGGGTCAACATCTTCTTGAAGCTATCCTAGATTCAAAATTTGAAAGCCTCATCAGTGGGAATTTTCGGTTGGTTAAGGGAGAGTTGGAAGCTTCAACCTTTGAGGTATTTAATGTGAATGGTGAAAAAGAAAGAATAATTGGATATTGGAACCAAAAGAAAGGACTTACCCGAAAGCTGAATGGAGCAGCACAGTTGGATGGAAGGAAGACAATCAAGACACCAATCTGGCCCGGGGACACTACAAAGACACCTCCAACAAAGAAATTGAGAATTGGAGTTCCCGTGAAACATGGTTTTAATGAATTCTTAAAAGTCGACGAAAAGAACAACAAAATATCAGGATTCTCTTATGATATCTTCATTGCTGCCTTCCCATTAGGGTCCTCTCTGGTATCCTACATGTCAAGGGCAATCTTGAATGTGACTCAAGATAAAACTCTAATGGATGAAATTCAGTCCAAGTCTTTTGATTACCAACCTGCCTGTGAGGATCAACGTGCCAAAATTGCTTCAGAGGGTCCAAGTCTTGGCATCTCCAGCTTCGGGGGCCTCTTCATCATCGCAGGTGTGGCCTCAATGGTTGCTCTTTTGATGCACATGTATCACTTCCTTTGCTCTCACTGGCCAGCGTTTCGCACAATTTGTTCTTCTGAGAGCACATTTTGGGCCAAATTGGTTGAAATGGCAAAGCATTTTGACAAGAAAGATCTCACTTCACATCAGTTTAAGCGAAGAGACTCAAGGGTACATGCTACGGATATTCCTGATGATGAAGGTCCAGCAGCTGCACCGGATGCTAATGATATGCAGAACAATTCATCAAGGACTCACGAAACAGTGGAGAACGATCTTGACATTAATGAAAATGAAAATCTTTCTTCAGGGTCAGGGCGTAGGGATTCATCTATGCCTATTACTCAGTTCACTCTGACCATCGACCATACACTTCCAATAAGGAAGCAAATTTGCATCCCTTCCAATAACCACCAAGGTACTGATCTTTCATCTACTCATCCTTATTCCAACCTTGAACATCAATCTCACCATCCGTCAGTCAATAGCCCTCACTCTGTTCCAAACCATATCACTCAGTACAAGACTTCAATTTTCTCTGCATCAAATTTGTCTTCCACAAAGGATAACCTTCTCGGCGGTGCTCCCACTACCAAGAGGTTCAAATCAATTCGGGTGAAACAAAACCTTAAGCCAAGATCGGAAATACAGATGAAGCGGAAATTCTTGTGTAAGTGCGCTCGACGTAGTCGAACCCGAATTCTTGAGACTGGTGACGATGATGATCGCCATGAGAAGAAGTCAGTTCTCAAGGTGACGAAAGCGAGAAAGTTGGAGGCTTCTATCATGCGCATCATTATGGCCATGAACAAGAAGTTCACCATTCTAGATGTAGGAGGACTATTGCTTTGGTTCAAGGAGGCATCAATTTCGGAGGGGAAAATTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

521

Amino Acids

58.1

Weight (kDa)

9.26

Isoelectric Point (pI)

35.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 653
Acc16I TGCGCA 1 cut(s) 1463
Acc36I ACCTGC 2 cut(s) 586, 653
AccB7I CCANNNNNTGG 1 cut(s) 626
AccI GTMKAC 1 cut(s) 414
AciI CCGC 2 cut(s) 1251, 1330
AclWI GGATC 1 cut(s) 597
AcoI YGGCCR 2 cut(s) 722, 1473
AcsI RAATTY 8 cut(s) 134, 157, 401, 549, 1062, 1219, 1334, 1371
AcuI CTGAAG 2 cut(s) 594, 963
AfaI GTAC 3 cut(s) 846, 1093, 1193
AfiI CCNNNNNNNGG 2 cut(s) 626, 642
AflII CTTAAG 1 cut(s) 1301
AflIII ACRYGT 2 cut(s) 498, 696
AjuI GAANNNNNNNTTGG 4 cut(s) 149, 181, 219, 251
AluBI AGCT 5 cut(s) 119, 188, 274, 639, 884
AluI AGCT 5 cut(s) 119, 188, 274, 639, 884
Alw21I GWGCWC 2 cut(s) 758, 1258
Alw26I GTCTC 2 cut(s) 828, 1373
AlwI GGATC 1 cut(s) 597
AlwNI CAGNNNCTG 1 cut(s) 884
Ama87I CYCGRG 1 cut(s) 329
AoxI GGCC 6 cut(s) 326, 646, 669, 722, 765, 1473
ApeKI GCWGC 4 cut(s) 284, 464, 881, 884
ApoI RAATTY 8 cut(s) 134, 157, 401, 549, 1062, 1219, 1334, 1371
ArsI GACNNNNNNTTYG 2 cut(s) 1503, 1535
AseI ATTAAT 1 cut(s) 957
AspLEI GCGC 2 cut(s) 1352, 1464
AspS9I GGNCC 6 cut(s) 327, 480, 617, 646, 765, 875
AsuC2I CCSGG 2 cut(s) 330, 331
AsuHPI GGTGA 7 cut(s) 104, 230, 1133, 1300, 1397, 1438, 1483
AvaI CYCGRG 1 cut(s) 329
AvaII GGWCC 3 cut(s) 480, 617, 875
BalI TGGCCA 2 cut(s) 724, 1475
BbsI GAAGAC 2 cut(s) 311, 1218
Bbv12I GWGCWC 2 cut(s) 758, 1258
BbvI GCAGC 4 cut(s) 296, 451, 871, 893
BccI CCATC 3 cut(s) 290, 1040, 1152
BcgI CGANNNNNNTGC 2 cut(s) 1524, 1558
BciVI GTATCC 1 cut(s) 502
BcnI CCSGG 2 cut(s) 330, 331
BcoDI GTCTC 2 cut(s) 828, 1373
BfaI CTAG 2 cut(s) 125, 1499
BfrI CTTAAG 1 cut(s) 1301
BfuAI ACCTGC 2 cut(s) 586, 653
BfuI GTATCC 1 cut(s) 502
BglII AGATCT 1 cut(s) 805
BisI GCNGC 4 cut(s) 285, 465, 882, 885
BlsI GCNGC 4 cut(s) 286, 466, 883, 886
Bme1390I CCNGG 2 cut(s) 330, 331
Bme18I GGWCC 3 cut(s) 480, 617, 875
BmeT110I CYCGRG 1 cut(s) 329
BmgT120I GGNCC 6 cut(s) 327, 480, 617, 646, 765, 875
BmiI GGNNCC 4 cut(s) 248, 481, 618, 647
BmrFI CCNGG 2 cut(s) 330, 331
BmsI GCATC 7 cut(s) 639, 681, 883, 1077, 1223, 1473, 1544
BoxI GACNNNNGTC 1 cut(s) 99
BpiI GAAGAC 2 cut(s) 311, 1218
BpmI CTGGAG 1 cut(s) 619
BpuEI CTTGAG 4 cut(s) 510, 823, 1397, 1406
BpuMI CCSGG 2 cut(s) 330, 331
BsaBI GATNNNNATC 1 cut(s) 1395
BsaJI CCNNGG 3 cut(s) 329, 330, 1087
BsaWI WCCGGW 1 cut(s) 889
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bsc4I CCNNNNNNNGG 2 cut(s) 626, 642
Bse1I ACTGG 3 cut(s) 94, 725, 1387
Bse3DI GCAATG 1 cut(s) 459
Bse8I GATNNNNATC 1 cut(s) 1395
BseDI CCNNGG 3 cut(s) 329, 330, 1087
BseGI GGATG 6 cut(s) 301, 550, 898, 1068, 1111, 1144
BseJI GATNNNNATC 1 cut(s) 1395
BseLI CCNNNNNNNGG 2 cut(s) 626, 642
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 3 cut(s) 741, 1031, 1202
BseNI ACTGG 3 cut(s) 94, 725, 1387
BseXI GCAGC 4 cut(s) 296, 451, 871, 893
BsgI GTGCAG 1 cut(s) 870
BshFI GGCC 6 cut(s) 328, 648, 671, 724, 767, 1475
BsiHKAI GWGCWC 2 cut(s) 758, 1258
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 2 cut(s) 330, 890
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 2 cut(s) 626, 642
BsmAI GTCTC 2 cut(s) 828, 1373
BsmFI GGGAC 1 cut(s) 347
BsnI GGCC 6 cut(s) 328, 648, 671, 724, 767, 1475
BsoBI CYCGRG 1 cut(s) 329
Bsp1286I GDGCHC 2 cut(s) 758, 1258
Bsp143I GATC 7 cut(s) 70, 589, 805, 946, 1096, 1310, 1396
BspACI CCGC 2 cut(s) 1251, 1330
BspANI GGCC 6 cut(s) 328, 648, 671, 724, 767, 1475
BspCNI CTCAG 3 cut(s) 742, 1030, 1201
BspLI GGNNCC 4 cut(s) 248, 481, 618, 647
BspMI ACCTGC 2 cut(s) 586, 653
BspPI GGATC 1 cut(s) 597
BspTI CTTAAG 1 cut(s) 1301
BsrDI GCAATG 1 cut(s) 459
BsrI ACTGG 3 cut(s) 94, 725, 1387
BssECI CCNNGG 3 cut(s) 329, 330, 1087
BssMI GATC 7 cut(s) 70, 589, 805, 946, 1096, 1310, 1396
BssT1I CCWWGG 1 cut(s) 1087
Bst4CI ACNGT 2 cut(s) 291, 937
Bst6I CTCTTC 2 cut(s) 656, 826
BstAFI CTTAAG 1 cut(s) 1301
BstAPI GCANNNNNTGC 1 cut(s) 893
BstC8I GCNNGC 1 cut(s) 726
BstDEI CTNAG 3 cut(s) 750, 1017, 1188
BstF5I GGATG 6 cut(s) 301, 550, 898, 1068, 1111, 1144
BstHHI GCGC 2 cut(s) 1352, 1464
BstKTI GATC 7 cut(s) 73, 592, 808, 949, 1099, 1313, 1399
BstMAI GTCTC 2 cut(s) 828, 1373
BstMBI GATC 7 cut(s) 70, 589, 805, 946, 1096, 1310, 1396
BstMWI GCNNNNNNNGC 5 cut(s) 605, 636, 645, 668, 893
BstNSI RCATGY 3 cut(s) 502, 700, 851
BstPAI GACNNNNGTC 1 cut(s) 99
BstSCI CCNGG 2 cut(s) 328, 329
BstV1I GCAGC 4 cut(s) 296, 451, 871, 893
BstV2I GAAGAC 2 cut(s) 311, 1218
BstX2I RGATCY 1 cut(s) 805
BstYI RGATCY 1 cut(s) 805
BsuI GTATCC 1 cut(s) 502
BsuRI GGCC 6 cut(s) 328, 648, 671, 724, 767, 1475
BtgZI GCGATG 1 cut(s) 643
BtsCI GGATG 6 cut(s) 301, 550, 898, 1068, 1111, 1144
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 4 cut(s) 12, 157, 718, 942
BveI ACCTGC 2 cut(s) 586, 653
Cac8I GCNNGC 1 cut(s) 726
CaiI CAGNNNCTG 1 cut(s) 884
CfoI GCGC 2 cut(s) 1352, 1464
Cfr13I GGNCC 6 cut(s) 327, 480, 617, 646, 765, 875
Cfr9I CCCGGG 1 cut(s) 329
CseI GACGC 1 cut(s) 52
Csp6I GTAC 3 cut(s) 845, 1092, 1192
CviAII CATG 8 cut(s) 97, 389, 499, 697, 848, 1403, 1459, 1477
CviQI GTAC 3 cut(s) 845, 1092, 1192
DdeI CTNAG 3 cut(s) 750, 1017, 1188
DpnI GATC 7 cut(s) 72, 591, 807, 948, 1098, 1312, 1398
DpnII GATC 7 cut(s) 70, 589, 805, 946, 1096, 1310, 1396
EaeI YGGCCR 2 cut(s) 722, 1473
Eam1104I CTCTTC 2 cut(s) 656, 826
EarI CTCTTC 2 cut(s) 656, 826
Eco130I CCWWGG 1 cut(s) 1087
Eco32I GATATC 1 cut(s) 454
Eco47I GGWCC 3 cut(s) 480, 617, 875
Eco57I CTGAAG 2 cut(s) 594, 963
Eco88I CYCGRG 1 cut(s) 329
EcoO109I RGGNCCY 2 cut(s) 480, 646
EcoRI GAATTC 2 cut(s) 401, 1371
EcoRV GATATC 1 cut(s) 454
EcoT14I CCWWGG 1 cut(s) 1087
ErhI CCWWGG 1 cut(s) 1087
FaeI CATG 8 cut(s) 100, 392, 502, 700, 851, 1406, 1462, 1480
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FaqI GGGAC 1 cut(s) 347
FatI CATG 8 cut(s) 96, 388, 498, 696, 847, 1402, 1458, 1476
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 4 cut(s) 285, 465, 882, 885
FokI GGATG 6 cut(s) 308, 557, 905, 1055, 1098, 1131
Fsp4HI GCNGC 4 cut(s) 285, 465, 882, 885
FspAI RTGCGCAY 1 cut(s) 1463
FspBI CTAG 2 cut(s) 125, 1499
FspI TGCGCA 1 cut(s) 1463
GlaI GCGC 2 cut(s) 1351, 1463
GluI GCNGC 4 cut(s) 285, 465, 882, 885
GsuI CTGGAG 1 cut(s) 619
HaeIII GGCC 6 cut(s) 328, 648, 671, 724, 767, 1475
HapII CCGG 2 cut(s) 330, 890
HgaI GACGC 1 cut(s) 52
HhaI GCGC 2 cut(s) 1352, 1464
Hin1II CATG 8 cut(s) 100, 392, 502, 700, 851, 1406, 1462, 1480
Hin6I GCGC 2 cut(s) 1350, 1462
HinP1I GCGC 2 cut(s) 1350, 1462
HincII GTYRAC 2 cut(s) 104, 415
HindII GTYRAC 2 cut(s) 104, 415
HindIII AAGCTT 1 cut(s) 186
HinfI GANTC 6 cut(s) 128, 441, 523, 836, 925, 998
HpaII CCGG 2 cut(s) 330, 890
HphI GGTGA 7 cut(s) 104, 230, 1133, 1300, 1397, 1438, 1483
Hpy166II GTNNAC 4 cut(s) 104, 415, 1023, 1491
Hpy188I TCNGA 5 cut(s) 613, 751, 1029, 1315, 1546
Hpy8I GTNNAC 4 cut(s) 104, 415, 1023, 1491
Hpy99I CGWCG 3 cut(s) 46, 419, 1359
HpyAV CCTTC 5 cut(s) 294, 478, 866, 1083, 1253
HpyCH4III ACNGT 2 cut(s) 291, 937
HpyCH4IV ACGT 2 cut(s) 595, 1357
HpyCH4V TGCA 5 cut(s) 694, 887, 907, 1068, 1214
HpyF10VI GCNNNNNNNGC 5 cut(s) 605, 636, 645, 668, 893
HpyF3I CTNAG 3 cut(s) 750, 1017, 1188
HpySE526I ACGT 2 cut(s) 595, 1357
Hsp92II CATG 8 cut(s) 100, 392, 502, 700, 851, 1406, 1462, 1480
HspAI GCGC 2 cut(s) 1350, 1462
Kzo9I GATC 7 cut(s) 70, 589, 805, 946, 1096, 1310, 1396
LmnI GCTCC 2 cut(s) 281, 1261
Lsp1109I GCAGC 4 cut(s) 296, 451, 871, 893
LweI GCATC 7 cut(s) 639, 681, 883, 1077, 1223, 1473, 1544
MaeI CTAG 2 cut(s) 125, 1499
MaeII ACGT 2 cut(s) 595, 1357
MaeIII GTNAC 4 cut(s) 92, 520, 1385, 1426
MalI GATC 7 cut(s) 72, 591, 807, 948, 1098, 1312, 1398
MboI GATC 7 cut(s) 70, 589, 805, 946, 1096, 1310, 1396
MboII GAAGA 9 cut(s) 101, 316, 448, 643, 738, 843, 969, 1218, 1420
MflI RGATCY 1 cut(s) 805
MhlI GDGCHC 2 cut(s) 758, 1258
MlsI TGGCCA 2 cut(s) 724, 1475
MluNI TGGCCA 2 cut(s) 724, 1475
MlyI GAGTC 3 cut(s) 517, 830, 919
MmeI TCCRAC 5 cut(s) 162, 273, 377, 1146, 1425
Mox20I TGGCCA 2 cut(s) 724, 1475
MscI TGGCCA 2 cut(s) 724, 1475
MseI TTAA 7 cut(s) 171, 207, 396, 407, 825, 957, 1302
MslI CAYNNNNRTG 1 cut(s) 1469
Msp20I TGGCCA 2 cut(s) 724, 1475
MspA1I CMGCKG 1 cut(s) 884
MspCI CTTAAG 1 cut(s) 1301
MspI CCGG 2 cut(s) 330, 890
MspR9I CCNGG 2 cut(s) 330, 331
MwoI GCNNNNNNNGC 5 cut(s) 605, 636, 645, 668, 893
NciI CCSGG 2 cut(s) 330, 331
NdeII GATC 7 cut(s) 70, 589, 805, 946, 1096, 1310, 1396
NlaIII CATG 8 cut(s) 100, 392, 502, 700, 851, 1406, 1462, 1480
NlaIV GGNNCC 4 cut(s) 248, 481, 618, 647
NmeAIII GCCGAG 1 cut(s) 1227
NmuCI GTSAC 4 cut(s) 92, 520, 1385, 1426
NsbI TGCGCA 1 cut(s) 1463
NspI RCATGY 3 cut(s) 502, 700, 851
PaqCI CACCTGC 1 cut(s) 653
PciI ACATGT 2 cut(s) 498, 696
PcsI WCGNNNNNNNCGW 1 cut(s) 1360
PfeI GAWTC 3 cut(s) 128, 441, 998
PflFI GACNNNGTC 1 cut(s) 1359
PflMI CCANNNNNTGG 1 cut(s) 626
PkrI GCNGC 4 cut(s) 286, 466, 883, 886
PleI GAGTC 3 cut(s) 517, 830, 919
PpsI GAGTC 3 cut(s) 517, 830, 919
PpuMI RGGWCCY 1 cut(s) 480
PscI ACATGT 2 cut(s) 498, 696
PshAI GACNNNNGTC 1 cut(s) 99
PshBI ATTAAT 1 cut(s) 957
Psp5II RGGWCCY 1 cut(s) 480
PspN4I GGNNCC 4 cut(s) 248, 481, 618, 647
PspPI GGNCC 6 cut(s) 327, 480, 617, 646, 765, 875
PspPPI RGGWCCY 1 cut(s) 480
PstNI CAGNNNCTG 1 cut(s) 884
PsuI RGATCY 1 cut(s) 805
PsyI GACNNNGTC 1 cut(s) 1359
PvuII CAGCTG 1 cut(s) 884
RsaI GTAC 3 cut(s) 846, 1093, 1193
RsaNI GTAC 3 cut(s) 845, 1092, 1192
RseI CAYNNNNRTG 1 cut(s) 1469
SalI GTCGAC 1 cut(s) 413
SaqAI TTAA 7 cut(s) 171, 207, 396, 407, 825, 957, 1302
SatI GCNGC 4 cut(s) 285, 465, 882, 885
Sau3AI GATC 7 cut(s) 70, 589, 805, 946, 1096, 1310, 1396
Sau96I GGNCC 6 cut(s) 327, 480, 617, 646, 765, 875
SchI GAGTC 3 cut(s) 517, 830, 919
ScrFI CCNGG 2 cut(s) 330, 331
SduI GDGCHC 2 cut(s) 758, 1258
SfaNI GCATC 7 cut(s) 639, 681, 883, 1077, 1223, 1473, 1544
SinI GGWCC 3 cut(s) 480, 617, 875
SmaI CCCGGG 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 1469
SmlI CTYRAG 5 cut(s) 525, 838, 1301, 1376, 1421
SmoI CTYRAG 5 cut(s) 525, 838, 1301, 1376, 1421
SsiI CCGC 2 cut(s) 1251, 1330
SspMI CTAG 2 cut(s) 125, 1499
StyD4I CCNGG 2 cut(s) 328, 329
StyI CCWWGG 1 cut(s) 1087
TaaI ACNGT 2 cut(s) 291, 937
TaiI ACGT 2 cut(s) 598, 1360
TaqI TCGA 4 cut(s) 414, 1035, 1354, 1363
TatI WGTACW 1 cut(s) 1191
TfiI GAWTC 3 cut(s) 128, 441, 998
Tru1I TTAA 7 cut(s) 171, 207, 396, 407, 825, 957, 1302
Tru9I TTAA 7 cut(s) 171, 207, 396, 407, 825, 957, 1302
TscAI CASTG 4 cut(s) 12, 157, 725, 942
TseFI GTSAC 4 cut(s) 92, 520, 1385, 1426
TseI GCWGC 4 cut(s) 284, 464, 881, 884
Tsp45I GTSAC 4 cut(s) 92, 520, 1385, 1426
TspGWI ACGGA 2 cut(s) 869, 1137
TspMI CCCGGG 1 cut(s) 329
TspRI CASTG 4 cut(s) 12, 157, 725, 942
Tth111I GACNNNGTC 1 cut(s) 1359
Van91I CCANNNNNTGG 1 cut(s) 626
Vha464I CTTAAG 1 cut(s) 1301
VpaK11BI GGWCC 3 cut(s) 480, 617, 875
VspI ATTAAT 1 cut(s) 957
XapI RAATTY 8 cut(s) 134, 157, 401, 549, 1062, 1219, 1334, 1371
XbaI TCTAGA 1 cut(s) 1498
XceI RCATGY 3 cut(s) 502, 700, 851
XmaI CCCGGG 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 414
XspI CTAG 2 cut(s) 125, 1499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.