Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001930

Physical Location & Seq

Genomic Coordinates Reverse (-)

42847113 .. 42848884

Gene Structure 1772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008928

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAACATTTACATTTTGCTAAGGCCAATTTGGTGCCATTGGTAACCATTCAGGATTATCATGAGGCACTATCTAGAGGAAACAAGAATAGAGTTGCTGCCATTTTAGATGAAGTCCCTTACCTCAAGTTGTTCCTTAAAAAGAACTGTTCCAAGTACACCATGGCTTTCCCATCAAGGTCCTCGCTGGTATCCTACATGTCAAGGGCAATCTTGAATGTGACTCAAGATAAAAATCAGATGGATAAAATTCAGTCGACTTACTTTGATTACATTGATACCCAACCTGCCTGTGACGATCAAAGTGCCAAAATTTCTTCAGAGAGTCCAAGTCTTGGTGTCTACAGCTTCGTAGGCCTCTTCATCATCGCAGGTGTGGCCTCTATGGTTGCTCTTTTGATGTACATGTATCACATCCTTTGCTCTCATTGGCCAGCTTTGCGAACAATTAGTTCTTCTGAGAGCAGTTTAATTTGGGAGAAATTGGTTGAAGTGGCAAAGCATTTTGACAAGAAAGATCTCACTTCACATCAGTTTAAGCGAAGAGAATCAAGAGGACATGCTTTAGACACTCCTGATGAAGGTCCAGCAGCTTCCCCGGGTGCTAATGATATGCAAAACAACTCCGCAAGAACTCACATAACAGTGGAGAACAATCTTGACATGAATGAAAATGAAAATCTTTCCTCAGGGCATAGGGATTCATCTATGCCTGTACTTGACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

243

Amino Acids

27.15

Weight (kDa)

6.19

Isoelectric Point (pI)

57.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06680 FvH4_3g38721 FvH4_4g08410 FvH4_6g06360
prunus_persica	Prupe.1G094600_v2.0.a1 Prupe.1G094700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0403951 RchiOBHm_Chr4g0403991 RchiOBHm_Chr4g0404001 RchiOBHm_Chr4g0404021 RchiOBHm_Chr4g0404081
rosa_laevigata	RLG00000008927 RLG00000008928 RLG00000008929 RLG00000008931 RLG00000008934 RLG00000008935 RLG00000008938 RLG00000008939 RLG00000019466 RLG00000027985 RLG00000032399
rosa_multiflora	Rmu_co8070616.1_g000001 Rmu_co8395539.1_g000001 Rmu_sc0003478.1_g000001 Rmu_sc0003483.1_g000003 Rmu_sc0004781.1_g000004 Rmu_sc0005134.1_g000003 Rmu_sc0006579.1_g000019 Rmu_sc0026037.1_g000003
rosa_roxburghii	Rroxscaffold_5G00348550 Rroxscaffold_5G00348600
rosa_rugosa	Rorug04G0046400 Rorug04G0046700 Rorug04G0046700
rosa_samantha	Rh4BG115300 Rh4BG115500 Rh4CG130700 Rh4CG130800 Rh4DG115400 Rh4DG115700
rosa_wichuraiana	Rw4G009780 Rw4G009790 Rw4G009800 Rw4G009930 Rw4G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	362
Acc36I	ACCTGC	2 cut(s)	295, 362
AccB1I	GGYRCC	1 cut(s)	34
AccB7I	CCANNNNNTGG	1 cut(s)	335
AccI	GTMKAC	2 cut(s)	257, 342
AciI	CCGC	1 cut(s)	627
AcoI	YGGCCR	1 cut(s)	431
AcsI	RAATTY	2 cut(s)	249, 312
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	3 cut(s)	158, 404, 717
AfiI	CCNNNNNNNGG	2 cut(s)	335, 581
AflIII	ACRYGT	2 cut(s)	198, 405
AgsI	TTSAA	2 cut(s)	217, 491
AluBI	AGCT	3 cut(s)	348, 437, 593
AluI	AGCT	3 cut(s)	348, 437, 593
Ama87I	CYCGRG	1 cut(s)	598
AoxI	GGCC	4 cut(s)	24, 355, 378, 431
ApeKI	GCWGC	2 cut(s)	98, 590
ApoI	RAATTY	2 cut(s)	249, 312
AspS9I	GGNCC	2 cut(s)	180, 584
AsuC2I	CCSGG	2 cut(s)	599, 600
AvaI	CYCGRG	1 cut(s)	598
AvaII	GGWCC	2 cut(s)	180, 584
AxyI	CCTNAGG	1 cut(s)	688
BalI	TGGCCA	1 cut(s)	433
BanI	GGYRCC	1 cut(s)	34
BbvI	GCAGC	2 cut(s)	85, 602
BccI	CCATC	2 cut(s)	181, 235
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BciVI	GTATCC	1 cut(s)	202
BcnI	CCSGG	2 cut(s)	599, 600
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	343
BfuAI	ACCTGC	2 cut(s)	295, 362
BfuI	GTATCC	1 cut(s)	202
BglII	AGATCT	1 cut(s)	517
BisI	GCNGC	2 cut(s)	99, 591
BlsI	GCNGC	2 cut(s)	100, 592
Bme1390I	CCNGG	2 cut(s)	599, 600
Bme18I	GGWCC	2 cut(s)	180, 584
BmeT110I	CYCGRG	1 cut(s)	598
BmgT120I	GGNCC	2 cut(s)	180, 584
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	2 cut(s)	599, 600
Bpu10I	CCTNAGC	1 cut(s)	21
BpuEI	CTTGAG	2 cut(s)	110, 210
BpuMI	CCSGG	2 cut(s)	599, 600
BsaBI	GATNNNNATC	1 cut(s)	234
BsaJI	CCNNGG	3 cut(s)	162, 597, 598
Bsc4I	CCNNNNNNNGG	2 cut(s)	335, 581
Bse21I	CCTNAGG	1 cut(s)	688
Bse8I	GATNNNNATC	1 cut(s)	234
BseDI	CCNNGG	3 cut(s)	162, 597, 598
BseGI	GGATG	1 cut(s)	414
BseJI	GATNNNNATC	1 cut(s)	234
BseLI	CCNNNNNNNGG	2 cut(s)	335, 581
BseMII	CTCAG	2 cut(s)	450, 702
BseXI	GCAGC	2 cut(s)	85, 602
BshFI	GGCC	4 cut(s)	26, 357, 380, 433
BshNI	GGYRCC	1 cut(s)	34
BsiHKCI	CYCGRG	1 cut(s)	598
BsiSI	CCGG	1 cut(s)	599
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	335, 581
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	4 cut(s)	26, 357, 380, 433
BsoBI	CYCGRG	1 cut(s)	598
Bsp1407I	TGTACA	1 cut(s)	402
Bsp143I	GATC	2 cut(s)	298, 517
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	1 cut(s)	627
BspANI	GGCC	4 cut(s)	26, 357, 380, 433
BspCNI	CTCAG	2 cut(s)	451, 701
BspHI	TCATGA	2 cut(s)	61, 725
BspLI	GGNNCC	1 cut(s)	36
BspMI	ACCTGC	2 cut(s)	295, 362
BspT107I	GGYRCC	1 cut(s)	34
BsrGI	TGTACA	1 cut(s)	402
BssECI	CCNNGG	3 cut(s)	162, 597, 598
BssMI	GATC	2 cut(s)	298, 517
BssT1I	CCWWGG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	149, 646
Bst6I	CTCTTC	2 cut(s)	365, 538
BstAUI	TGTACA	1 cut(s)	402
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	3 cut(s)	21, 459, 688
BstDSI	CCRYGG	1 cut(s)	162
BstEII	GGTNACC	1 cut(s)	43
BstENI	CCTNNNNNAGG	1 cut(s)	579
BstF5I	GGATG	1 cut(s)	414
BstKTI	GATC	2 cut(s)	301, 520
BstMBI	GATC	2 cut(s)	298, 517
BstMWI	GCNNNNNNNGC	3 cut(s)	354, 377, 439
BstNSI	RCATGY	3 cut(s)	202, 409, 563
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	2 cut(s)	597, 598
BstSFI	CTRYAG	1 cut(s)	343
BstV1I	GCAGC	2 cut(s)	85, 602
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
Bsu36I	CCTNAGG	1 cut(s)	688
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	4 cut(s)	26, 357, 380, 433
BtgI	CCRYGG	1 cut(s)	162
BtgZI	GCGATG	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	414
BtsIMutI	CAGTG	1 cut(s)	651
BveI	ACCTGC	2 cut(s)	295, 362
Cac8I	GCNNGC	1 cut(s)	435
CciI	TCATGA	2 cut(s)	61, 725
Cfr13I	GGNCC	2 cut(s)	180, 584
Cfr9I	CCCGGG	1 cut(s)	598
Csp6I	GTAC	3 cut(s)	157, 403, 716
CviAII	CATG	7 cut(s)	62, 163, 199, 406, 560, 664, 726
CviJI	RGCY	8 cut(s)	26, 167, 348, 357, 380, 433, 437, 593
CviKI_1	RGCY	8 cut(s)	26, 167, 348, 357, 380, 433, 437, 593
CviQI	GTAC	3 cut(s)	157, 403, 716
DdeI	CTNAG	3 cut(s)	21, 459, 688
DpnI	GATC	2 cut(s)	300, 519
DpnII	GATC	2 cut(s)	298, 517
EaeI	YGGCCR	1 cut(s)	431
Eam1104I	CTCTTC	2 cut(s)	365, 538
EarI	CTCTTC	2 cut(s)	365, 538
Eco130I	CCWWGG	1 cut(s)	162
Eco147I	AGGCCT	1 cut(s)	357
Eco47I	GGWCC	2 cut(s)	180, 584
Eco57I	CTGAAG	1 cut(s)	303
Eco81I	CCTNAGG	1 cut(s)	688
Eco88I	CYCGRG	1 cut(s)	598
Eco91I	GGTNACC	1 cut(s)	43
EcoNI	CCTNNNNNAGG	1 cut(s)	579
EcoO109I	RGGNCCY	1 cut(s)	180
EcoO65I	GGTNACC	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	7 cut(s)	65, 166, 202, 409, 563, 667, 729
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	7 cut(s)	61, 162, 198, 405, 559, 663, 725
FblI	GTMKAC	2 cut(s)	257, 342
Fnu4HI	GCNGC	2 cut(s)	99, 591
FokI	GGATG	1 cut(s)	401
Fsp4HI	GCNGC	2 cut(s)	99, 591
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	2 cut(s)	99, 591
HaeIII	GGCC	4 cut(s)	26, 357, 380, 433
HapII	CCGG	1 cut(s)	599
Hin1II	CATG	7 cut(s)	65, 166, 202, 409, 563, 667, 729
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HinfI	GANTC	5 cut(s)	223, 325, 548, 701, 722
HpaII	CCGG	1 cut(s)	599
Hpy166II	GTNNAC	3 cut(s)	159, 258, 343
Hpy188I	TCNGA	3 cut(s)	240, 322, 460
Hpy188III	TCNNGA	9 cut(s)	53, 62, 75, 214, 227, 552, 575, 659, 726
Hpy8I	GTNNAC	3 cut(s)	159, 258, 343
HpyAV	CCTTC	1 cut(s)	575
HpyCH4III	ACNGT	2 cut(s)	149, 646
HpyCH4V	TGCA	1 cut(s)	616
HpyF10VI	GCNNNNNNNGC	3 cut(s)	354, 377, 439
HpyF3I	CTNAG	3 cut(s)	21, 459, 688
Hsp92II	CATG	7 cut(s)	65, 166, 202, 409, 563, 667, 729
Kzo9I	GATC	2 cut(s)	298, 517
Lsp1109I	GCAGC	2 cut(s)	85, 602
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	3 cut(s)	43, 220, 293
MalI	GATC	2 cut(s)	300, 519
MboI	GATC	2 cut(s)	298, 517
MboII	GAAGA	4 cut(s)	309, 352, 447, 555
MflI	RGATCY	1 cut(s)	517
MlsI	TGGCCA	1 cut(s)	433
MluCI	AATT	6 cut(s)	28, 249, 312, 447, 471, 482
MluNI	TGGCCA	1 cut(s)	433
MlyI	GAGTC	3 cut(s)	217, 334, 716
MnlI	CCTC	8 cut(s)	58, 71, 134, 193, 368, 391, 548, 697
Mox20I	TGGCCA	1 cut(s)	433
MscI	TGGCCA	1 cut(s)	433
MseI	TTAA	3 cut(s)	138, 470, 537
MslI	CAYNNNNRTG	1 cut(s)	644
Msp20I	TGGCCA	1 cut(s)	433
MspI	CCGG	1 cut(s)	599
MspR9I	CCNGG	2 cut(s)	599, 600
MwoI	GCNNNNNNNGC	3 cut(s)	354, 377, 439
NciI	CCSGG	2 cut(s)	599, 600
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	2 cut(s)	298, 517
NlaIII	CATG	7 cut(s)	65, 166, 202, 409, 563, 667, 729
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	2 cut(s)	220, 293
NspI	RCATGY	3 cut(s)	202, 409, 563
PagI	TCATGA	2 cut(s)	61, 725
PaqCI	CACCTGC	1 cut(s)	362
PceI	AGGCCT	1 cut(s)	357
PciI	ACATGT	2 cut(s)	198, 405
PfeI	GAWTC	2 cut(s)	548, 701
PflMI	CCANNNNNTGG	1 cut(s)	335
PkrI	GCNGC	2 cut(s)	100, 592
PleI	GAGTC	3 cut(s)	217, 333, 716
PpsI	GAGTC	3 cut(s)	217, 333, 716
PpuMI	RGGWCCY	1 cut(s)	180
PscI	ACATGT	2 cut(s)	198, 405
Psp5II	RGGWCCY	1 cut(s)	180
PspEI	GGTNACC	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	2 cut(s)	180, 584
PspPPI	RGGWCCY	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	3 cut(s)	158, 404, 717
RsaNI	GTAC	3 cut(s)	157, 403, 716
RseI	CAYNNNNRTG	1 cut(s)	644
SalI	GTCGAC	1 cut(s)	256
SaqAI	TTAA	3 cut(s)	138, 470, 537
SatI	GCNGC	2 cut(s)	99, 591
Sau3AI	GATC	2 cut(s)	298, 517
Sau96I	GGNCC	2 cut(s)	180, 584
SchI	GAGTC	3 cut(s)	217, 334, 716
ScrFI	CCNGG	2 cut(s)	599, 600
SetI	ASST	8 cut(s)	126, 182, 289, 350, 376, 439, 586, 595
SfcI	CTRYAG	1 cut(s)	343
SinI	GGWCC	2 cut(s)	180, 584
SmaI	CCCGGG	1 cut(s)	600
SmiMI	CAYNNNNRTG	1 cut(s)	644
SmlI	CTYRAG	2 cut(s)	125, 225
SmoI	CTYRAG	2 cut(s)	125, 225
Sse9I	AATT	6 cut(s)	28, 249, 312, 447, 471, 482
SseBI	AGGCCT	1 cut(s)	357
SsiI	CCGC	1 cut(s)	627
SspMI	CTAG	1 cut(s)	75
StuI	AGGCCT	1 cut(s)	357
StyD4I	CCNGG	2 cut(s)	597, 598
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	149, 646
TaqI	TCGA	1 cut(s)	257
TasI	AATT	6 cut(s)	28, 249, 312, 447, 471, 482
TatI	WGTACW	3 cut(s)	156, 402, 715
TfiI	GAWTC	2 cut(s)	548, 701
Tru1I	TTAA	3 cut(s)	138, 470, 537
Tru9I	TTAA	3 cut(s)	138, 470, 537
TscAI	CASTG	1 cut(s)	651
TseFI	GTSAC	2 cut(s)	220, 293
TseI	GCWGC	2 cut(s)	98, 590
Tsp45I	GTSAC	2 cut(s)	220, 293
TspDTI	ATGAA	7 cut(s)	126, 352, 594, 680, 684, 690, 693
TspMI	CCCGGG	1 cut(s)	598
TspRI	CASTG	1 cut(s)	651
Van91I	CCANNNNNTGG	1 cut(s)	335
VpaK11BI	GGWCC	2 cut(s)	180, 584
XagI	CCTNNNNNAGG	1 cut(s)	579
XapI	RAATTY	2 cut(s)	249, 312
XbaI	TCTAGA	1 cut(s)	74
XceI	RCATGY	3 cut(s)	202, 409, 563
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XmaI	CCCGGG	1 cut(s)	598
XmiI	GTMKAC	2 cut(s)	257, 342
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.