Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001930

Physical Location & Seq

Genomic Coordinates Forward (+)

18216047 .. 18216535

Gene Structure 489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG115400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGATAAAATTCAGTCGACTTACTTTGATTACATTGATAACCAACCTGCCTGTGACGACCAAAGAGCCAAAATTTCTTCAGAGGGTCCAAGTCTTGTGTCTACAGCTTCGGAGGCCTCTTCATCATCGCAGTTCTTCAGAGAGAGCAGTTTTTGGGAGAAATTGGTTGAAGTAGCAAAGCATTTTGACAAGAAAGATCTCACTTCACATCAGTTTAAGCGGAGAGAATCAGGAGTACATGCTTTAGACACTCCTGATGAAGGTCCAGCAGCTGCACCGGTTGCTAATGATATGCAAAACAACTCAGCAGGAACTCACATAACAGTGGAGAACAATCTTGACATGAATGAAAATGAAAATCTTTCCTCAGGGCACAGGGATTCATCTATGCCTGTACTTGACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

135

Amino Acids

14.92

Weight (kDa)

4.68

Isoelectric Point (pI)

53.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06680 FvH4_3g38721 FvH4_4g08410 FvH4_6g06360
prunus_persica	Prupe.1G094600_v2.0.a1 Prupe.1G094700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0403951 RchiOBHm_Chr4g0403991 RchiOBHm_Chr4g0404001 RchiOBHm_Chr4g0404021 RchiOBHm_Chr4g0404081
rosa_laevigata	RLG00000008927 RLG00000008928 RLG00000008929 RLG00000008931 RLG00000008934 RLG00000008935 RLG00000008938 RLG00000008939 RLG00000019466 RLG00000027985 RLG00000032399
rosa_multiflora	Rmu_co8070616.1_g000001 Rmu_co8395539.1_g000001 Rmu_sc0003478.1_g000001 Rmu_sc0003483.1_g000003 Rmu_sc0004781.1_g000004 Rmu_sc0005134.1_g000003 Rmu_sc0006579.1_g000019 Rmu_sc0026037.1_g000003
rosa_roxburghii	Rroxscaffold_5G00348550 Rroxscaffold_5G00348600
rosa_rugosa	Rorug04G0046400 Rorug04G0046700 Rorug04G0046700
rosa_samantha	Rh4BG115300 Rh4BG115500 Rh4CG130700 Rh4CG130800 Rh4DG115400 Rh4DG115700
rosa_wichuraiana	Rw4G009780 Rw4G009790 Rw4G009800 Rw4G009930 Rw4G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	55
AccI	GTMKAC	2 cut(s)	17, 101
AciI	CCGC	1 cut(s)	220
AcsI	RAATTY	2 cut(s)	9, 72
AcuI	CTGAAG	2 cut(s)	63, 121
AfaI	GTAC	2 cut(s)	237, 396
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgeI	ACCGGT	1 cut(s)	277
AgsI	TTSAA	1 cut(s)	170
AluBI	AGCT	2 cut(s)	107, 272
AluI	AGCT	2 cut(s)	107, 272
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	2 cut(s)	269, 272
ApoI	RAATTY	2 cut(s)	9, 72
AsiGI	ACCGGT	1 cut(s)	277
AspS9I	GGNCC	2 cut(s)	86, 263
AvaII	GGWCC	2 cut(s)	86, 263
AxyI	CCTNAGG	1 cut(s)	367
BaeGI	GKGCMC	1 cut(s)	375
BbvI	GCAGC	2 cut(s)	259, 281
BfmI	CTRYAG	1 cut(s)	102
BfuAI	ACCTGC	1 cut(s)	55
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	2 cut(s)	270, 273
BlsI	GCNGC	2 cut(s)	271, 274
Bme18I	GGWCC	2 cut(s)	86, 263
BmgT120I	GGNCC	2 cut(s)	86, 263
BmiI	GGNNCC	1 cut(s)	87
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse118I	RCCGGY	1 cut(s)	277
Bse21I	CCTNAGG	1 cut(s)	367
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMII	CTCAG	2 cut(s)	318, 381
BseSI	GKGCMC	1 cut(s)	375
BseXI	GCAGC	2 cut(s)	259, 281
BsgI	GTGCAG	1 cut(s)	258
BshFI	GGCC	1 cut(s)	116
BshTI	ACCGGT	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	260
BsnI	GGCC	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	1 cut(s)	220
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	2 cut(s)	317, 380
BspHI	TCATGA	1 cut(s)	404
BspLI	GGNNCC	1 cut(s)	87
BspMI	ACCTGC	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	277
BssMI	GATC	1 cut(s)	196
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	1 cut(s)	124
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstDEI	CTNAG	2 cut(s)	304, 367
BstENI	CCTNNNNNAGG	1 cut(s)	258
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 281
BstNSI	RCATGY	1 cut(s)	242
BstSFI	CTRYAG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	375
BstV1I	GCAGC	2 cut(s)	259, 281
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
Bsu36I	CCTNAGG	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	116
BtgZI	GCGATG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	330
BveI	ACCTGC	1 cut(s)	55
CaiI	CAGNNNCTG	1 cut(s)	272
CciI	TCATGA	1 cut(s)	404
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	2 cut(s)	86, 263
Csp6I	GTAC	2 cut(s)	236, 395
CspAI	ACCGGT	1 cut(s)	277
CviAII	CATG	3 cut(s)	239, 343, 405
CviJI	RGCY	4 cut(s)	68, 107, 116, 272
CviKI_1	RGCY	4 cut(s)	68, 107, 116, 272
CviQI	GTAC	2 cut(s)	236, 395
DdeI	CTNAG	2 cut(s)	304, 367
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco147I	AGGCCT	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	86, 263
Eco57I	CTGAAG	2 cut(s)	63, 121
Eco81I	CCTNAGG	1 cut(s)	367
EcoNI	CCTNNNNNAGG	1 cut(s)	258
FaeI	CATG	3 cut(s)	242, 346, 408
FaiI	YATR	6 cut(s)	240, 293, 320, 344, 389, 406
FatI	CATG	3 cut(s)	238, 342, 404
FblI	GTMKAC	2 cut(s)	17, 101
Fnu4HI	GCNGC	2 cut(s)	270, 273
Fsp4HI	GCNGC	2 cut(s)	270, 273
GluI	GCNGC	2 cut(s)	270, 273
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	1 cut(s)	278
Hin1II	CATG	3 cut(s)	242, 346, 408
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	3 cut(s)	227, 380, 401
HpaII	CCGG	1 cut(s)	278
Hpy166II	GTNNAC	2 cut(s)	18, 102
Hpy188I	TCNGA	3 cut(s)	82, 112, 140
Hpy188III	TCNNGA	4 cut(s)	231, 254, 338, 405
Hpy8I	GTNNAC	2 cut(s)	18, 102
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4V	TGCA	2 cut(s)	275, 295
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 281
HpyF3I	CTNAG	2 cut(s)	304, 367
Hsp92II	CATG	3 cut(s)	242, 346, 408
Kzo9I	GATC	1 cut(s)	196
LpnPI	CCDG	9 cut(s)	60, 64, 216, 267, 279, 291, 294, 354, 361
Lsp1109I	GCAGC	2 cut(s)	259, 281
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	3 cut(s)	69, 111, 127
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	3 cut(s)	9, 72, 161
MlyI	GAGTC	1 cut(s)	395
MnlI	CCTC	4 cut(s)	76, 106, 127, 376
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	113, 281
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	3 cut(s)	242, 346, 408
NlaIV	GGNNCC	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	53
NspI	RCATGY	1 cut(s)	242
PagI	TCATGA	1 cut(s)	404
PceI	AGGCCT	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	227, 380
PinAI	ACCGGT	1 cut(s)	277
PkrI	GCNGC	2 cut(s)	271, 274
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	2 cut(s)	86, 263
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	2 cut(s)	237, 396
RsaNI	GTAC	2 cut(s)	236, 395
RseI	CAYNNNNRTG	1 cut(s)	323
SalI	GTCGAC	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	2 cut(s)	270, 273
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	2 cut(s)	86, 263
SchI	GAGTC	1 cut(s)	395
SduI	GDGCHC	1 cut(s)	375
SetI	ASST	4 cut(s)	49, 109, 265, 274
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	2 cut(s)	86, 263
SmiMI	CAYNNNNRTG	1 cut(s)	323
Sse9I	AATT	3 cut(s)	9, 72, 161
SseBI	AGGCCT	1 cut(s)	116
SsiI	CCGC	1 cut(s)	220
StuI	AGGCCT	1 cut(s)	116
TaaI	ACNGT	1 cut(s)	325
TaqI	TCGA	1 cut(s)	17
TasI	AATT	3 cut(s)	9, 72, 161
TatI	WGTACW	2 cut(s)	235, 394
TfiI	GAWTC	2 cut(s)	227, 380
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	2 cut(s)	269, 272
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	6 cut(s)	111, 273, 359, 363, 369, 372
TspRI	CASTG	1 cut(s)	330
VpaK11BI	GGWCC	2 cut(s)	86, 263
XagI	CCTNNNNNAGG	1 cut(s)	258
XapI	RAATTY	2 cut(s)	9, 72
XceI	RCATGY	1 cut(s)	242
XmiI	GTMKAC	2 cut(s)	17, 101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.