Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001930

Physical Location & Seq

Genomic Coordinates Forward (+)

52326652 .. 52327072

Gene Structure 421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019466

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGGCTGCTTCTATGGAGATCTCCGTCATCTCCGAATCAGTGTTGGCCTCGGCTCACGTGCTTCACCACTGACCGCCTTCATCCTTGGTGTGAGGGATGGCGAGGTGTTGGTGTTTGCATTGGTGGATGGCATTGATCCAGGCAACGCCGGAGTCGGGGTTGGGTTCGATCTGGTGGATTTTCATCGGGGTTGGATTTGCTCTGGTGATCTACAGCGACGACTGGCTGCGAGTCTGGTGGTGGCCCGGAACGATACCGGAGATGCAGATGTGAACGACGCATGGCGTGCAACGTTGTGGCTGGGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

10.97

Weight (kDa)

5.05

Isoelectric Point (pI)

29.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06680 FvH4_3g38721 FvH4_4g08410 FvH4_6g06360
prunus_persica	Prupe.1G094600_v2.0.a1 Prupe.1G094700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0403951 RchiOBHm_Chr4g0403991 RchiOBHm_Chr4g0404001 RchiOBHm_Chr4g0404021 RchiOBHm_Chr4g0404081
rosa_laevigata	RLG00000008927 RLG00000008928 RLG00000008929 RLG00000008931 RLG00000008934 RLG00000008935 RLG00000008938 RLG00000008939 RLG00000019466 RLG00000027985 RLG00000032399
rosa_multiflora	Rmu_co8070616.1_g000001 Rmu_co8395539.1_g000001 Rmu_sc0003478.1_g000001 Rmu_sc0003483.1_g000003 Rmu_sc0004781.1_g000004 Rmu_sc0005134.1_g000003 Rmu_sc0006579.1_g000019 Rmu_sc0026037.1_g000003
rosa_roxburghii	Rroxscaffold_5G00348550 Rroxscaffold_5G00348600
rosa_rugosa	Rorug04G0046400 Rorug04G0046700 Rorug04G0046700
rosa_samantha	Rh4BG115300 Rh4BG115500 Rh4CG130700 Rh4CG130800 Rh4DG115400 Rh4DG115700
rosa_wichuraiana	Rw4G009780 Rw4G009790 Rw4G009800 Rw4G009930 Rw4G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	75
AclI	AACGTT	1 cut(s)	293
AclWI	GGATC	1 cut(s)	131
AcvI	CACGTG	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	156
AjnI	CCWGG	1 cut(s)	139
AlwI	GGATC	1 cut(s)	131
AoxI	GGCC	2 cut(s)	46, 243
ApeKI	GCWGC	2 cut(s)	6, 227
AspS9I	GGNCC	1 cut(s)	244
AsuC2I	CCSGG	1 cut(s)	247
AsuHPI	GGTGA	2 cut(s)	57, 218
BbrPI	CACGTG	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	2 cut(s)	92, 122
BciT130I	CCWGG	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	247
BfmI	CTRYAG	1 cut(s)	212
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	2 cut(s)	7, 228
BlsI	GCNGC	2 cut(s)	8, 229
Bme1390I	CCNGG	2 cut(s)	141, 247
BmgT120I	GGNCC	1 cut(s)	244
BmrFI	CCNGG	2 cut(s)	141, 247
BmsI	GCATC	1 cut(s)	253
BpuMI	CCSGG	1 cut(s)	247
BsaAI	YACGTR	1 cut(s)	59
BsaBI	GATNNNNATC	1 cut(s)	183
BsaJI	CCNNGG	2 cut(s)	49, 85
BsaWI	WCCGGW	1 cut(s)	257
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	228
Bse8I	GATNNNNATC	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	49, 85
BseGI	GGATG	3 cut(s)	81, 103, 133
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	214
BseYI	CCCAGC	1 cut(s)	301
BshFI	GGCC	2 cut(s)	48, 245
BsiSI	CCGG	3 cut(s)	150, 247, 258
BslI	CCNNNNNNNGG	1 cut(s)	156
BsnI	GGCC	2 cut(s)	48, 245
Bsp143I	GATC	4 cut(s)	19, 136, 169, 208
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	2 cut(s)	48, 245
BspPI	GGATC	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	228
BssECI	CCNNGG	2 cut(s)	49, 85
BssMI	GATC	4 cut(s)	19, 136, 169, 208
BssT1I	CCWWGG	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstBAI	YACGTR	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	288
BstF5I	GGATG	3 cut(s)	81, 103, 133
BstKTI	GATC	4 cut(s)	22, 139, 172, 211
BstMBI	GATC	4 cut(s)	19, 136, 169, 208
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	2 cut(s)	139, 245
BstSFI	CTRYAG	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	214
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	2 cut(s)	48, 245
BtsCI	GGATG	3 cut(s)	81, 103, 133
BtsIMutI	CAGTG	2 cut(s)	46, 68
Cac8I	GCNNGC	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	244
CseI	GACGC	1 cut(s)	287
CviAII	CATG	1 cut(s)	282
CviJI	RGCY	6 cut(s)	6, 48, 54, 227, 245, 301
CviKI_1	RGCY	6 cut(s)	6, 48, 54, 227, 245, 301
DpnI	GATC	4 cut(s)	21, 138, 171, 210
DpnII	GATC	4 cut(s)	19, 136, 169, 208
Eco130I	CCWWGG	1 cut(s)	85
Eco72I	CACGTG	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	1 cut(s)	285
FaiI	YATR	3 cut(s)	15, 283, 310
FatI	CATG	1 cut(s)	281
Fnu4HI	GCNGC	2 cut(s)	7, 228
FokI	GGATG	3 cut(s)	68, 110, 140
Fsp4HI	GCNGC	2 cut(s)	7, 228
GluI	GCNGC	2 cut(s)	7, 228
GsaI	CCCAGC	1 cut(s)	305
HaeIII	GGCC	2 cut(s)	48, 245
HapII	CCGG	3 cut(s)	150, 247, 258
HgaI	GACGC	1 cut(s)	287
Hin1II	CATG	1 cut(s)	285
HinfI	GANTC	3 cut(s)	36, 153, 232
HpaII	CCGG	3 cut(s)	150, 247, 258
HphI	GGTGA	2 cut(s)	57, 218
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	274
Hpy99I	CGWCG	2 cut(s)	222, 281
HpyAV	CCTTC	1 cut(s)	88
HpyCH4IV	ACGT	2 cut(s)	58, 293
HpyCH4V	TGCA	3 cut(s)	119, 266, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpySE526I	ACGT	2 cut(s)	58, 293
Hsp92II	CATG	1 cut(s)	285
Kzo9I	GATC	4 cut(s)	19, 136, 169, 208
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	253
MaeII	ACGT	2 cut(s)	58, 293
MalI	GATC	4 cut(s)	21, 138, 171, 210
MboI	GATC	4 cut(s)	19, 136, 169, 208
MflI	RGATCY	1 cut(s)	19
MlyI	GAGTC	2 cut(s)	162, 241
MmeI	TCCRAC	1 cut(s)	173
MnlI	CCTC	3 cut(s)	59, 87, 97
MspI	CCGG	3 cut(s)	150, 247, 258
MspR9I	CCNGG	2 cut(s)	141, 247
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	287
NciI	CCSGG	1 cut(s)	247
NdeII	GATC	4 cut(s)	19, 136, 169, 208
NlaIII	CATG	1 cut(s)	285
NmeAIII	GCCGAG	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	8, 229
PleI	GAGTC	2 cut(s)	161, 240
PmaCI	CACGTG	1 cut(s)	59
PmlI	CACGTG	1 cut(s)	59
PpsI	GAGTC	2 cut(s)	161, 240
Ppu21I	YACGTR	1 cut(s)	59
Psp1406I	AACGTT	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	139
PspCI	CACGTG	1 cut(s)	59
PspFI	CCCAGC	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	19
SatI	GCNGC	2 cut(s)	7, 228
Sau3AI	GATC	4 cut(s)	19, 136, 169, 208
Sau96I	GGNCC	1 cut(s)	244
SchI	GAGTC	2 cut(s)	162, 241
ScrFI	CCNGG	2 cut(s)	141, 247
SetI	ASST	3 cut(s)	61, 108, 296
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	212
SsiI	CCGC	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	139, 245
StyI	CCWWGG	1 cut(s)	85
TaiI	ACGT	2 cut(s)	61, 296
TaqI	TCGA	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	36
TscAI	CASTG	2 cut(s)	46, 75
TseI	GCWGC	2 cut(s)	6, 227
TspDTI	ATGAA	2 cut(s)	70, 173
TspGWI	ACGGA	1 cut(s)	14
TspRI	CASTG	2 cut(s)	46, 75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.