Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001930

Physical Location & Seq

Genomic Coordinates Forward (+)

17534420 .. 17534880

Gene Structure 461 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027985

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAGAGTCGAGAGGGAGAGCGAGTTCACGCGGAACCCTAGCGCCGCCGCCTTCAATGGGCTGCTTCTATGGAGATCCCCGTCATCTCCGCATCTGTGTTTGCCTCGGCATGCGTGTTTCACCACTAACCGCCTTCACCCTCGGGAGCGGTGGTTGGTGCTTGGACTGGTGGATGGCATTGATGCAGGCAACGTCGGAGTCGGGGCTGGTTTCGATCTGGTGGATTTGGCTTATCGGGGTTGGTTTTGCTCTGGTGATGCACGACGGCGACTGGTTGCGAGTCTTGTGGTGGCCCGGTATTCGGTTTGGCAATACGGAGATGAAGATGAGAACGTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.66

Weight (kDa)

6.82

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06680 FvH4_3g38721 FvH4_4g08410 FvH4_6g06360
prunus_persica	Prupe.1G094600_v2.0.a1 Prupe.1G094700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0403951 RchiOBHm_Chr4g0403991 RchiOBHm_Chr4g0404001 RchiOBHm_Chr4g0404021 RchiOBHm_Chr4g0404081
rosa_laevigata	RLG00000008927 RLG00000008928 RLG00000008929 RLG00000008931 RLG00000008934 RLG00000008935 RLG00000008938 RLG00000008939 RLG00000019466 RLG00000027985 RLG00000032399
rosa_multiflora	Rmu_co8070616.1_g000001 Rmu_co8395539.1_g000001 Rmu_sc0003478.1_g000001 Rmu_sc0003483.1_g000003 Rmu_sc0004781.1_g000004 Rmu_sc0005134.1_g000003 Rmu_sc0006579.1_g000019 Rmu_sc0026037.1_g000003
rosa_roxburghii	Rroxscaffold_5G00348550 Rroxscaffold_5G00348600
rosa_rugosa	Rorug04G0046400 Rorug04G0046700 Rorug04G0046700
rosa_samantha	Rh4BG115300 Rh4BG115500 Rh4CG130700 Rh4CG130800 Rh4DG115400 Rh4DG115700
rosa_wichuraiana	Rw4G009780 Rw4G009790 Rw4G009800 Rw4G009930 Rw4G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	148
AccII	CGCG	1 cut(s)	31
AciI	CCGC	6 cut(s)	31, 45, 48, 89, 130, 148
AclI	AACGTT	1 cut(s)	333
AclWI	GGATC	1 cut(s)	69
AfiI	CCNNNNNNNGG	2 cut(s)	57, 301
AgsI	TTSAA	1 cut(s)	55
AloI	GAACNNNNNNTCC	2 cut(s)	8, 40
AlwI	GGATC	1 cut(s)	69
Ama87I	CYCGRG	1 cut(s)	141
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	1 cut(s)	295
AsuHPI	GGTGA	3 cut(s)	112, 128, 266
AvaI	CYCGRG	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	48
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	281
BcnI	CCSGG	1 cut(s)	295
BfaI	CTAG	1 cut(s)	39
BfoI	RGCGCY	1 cut(s)	45
BisI	GCNGC	3 cut(s)	45, 48, 62
BlsI	GCNGC	3 cut(s)	46, 49, 63
Bme1390I	CCNGG	1 cut(s)	295
BmeT110I	CYCGRG	1 cut(s)	141
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	295
BmsI	GCATC	3 cut(s)	100, 172, 247
BpuMI	CCSGG	1 cut(s)	295
BsaJI	CCNNGG	2 cut(s)	104, 140
BsaXI	ACNNNNNCTCC	4 cut(s)	8, 38, 137, 167
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 301
Bse1I	ACTGG	2 cut(s)	171, 276
BseDI	CCNNGG	2 cut(s)	104, 140
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	2 cut(s)	57, 301
BseNI	ACTGG	2 cut(s)	171, 276
BseXI	GCAGC	1 cut(s)	48
Bsh1236I	CGCG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	293
BsiHKCI	CYCGRG	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	295
BslI	CCNNNNNNNGG	2 cut(s)	57, 301
BsnI	GGCC	1 cut(s)	293
BsoBI	CYCGRG	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	74, 214
BspACI	CCGC	6 cut(s)	31, 45, 48, 89, 130, 148
BspANI	GGCC	1 cut(s)	293
BspFNI	CGCG	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	69
BsrBI	CCGCTC	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	171, 276
BssECI	CCNNGG	2 cut(s)	104, 140
BssMI	GATC	2 cut(s)	74, 214
BstC8I	GCNNGC	2 cut(s)	111, 187
BstDEI	CTNAG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	178
BstFNI	CGCG	1 cut(s)	31
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	2 cut(s)	77, 217
BstMBI	GATC	2 cut(s)	74, 214
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	293
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	293
BtsCI	GGATG	1 cut(s)	178
Cac8I	GCNNGC	2 cut(s)	111, 187
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	292
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	4 cut(s)	61, 206, 230, 293
CviKI_1	RGCY	4 cut(s)	61, 206, 230, 293
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	2 cut(s)	76, 216
DpnII	GATC	2 cut(s)	74, 214
Eco88I	CYCGRG	1 cut(s)	141
FaeI	CATG	1 cut(s)	113
FaiI	YATR	2 cut(s)	70, 111
FatI	CATG	1 cut(s)	109
Fnu4HI	GCNGC	3 cut(s)	45, 48, 62
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	3 cut(s)	45, 48, 62
FspBI	CTAG	1 cut(s)	39
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	3 cut(s)	45, 48, 62
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	1 cut(s)	295
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	1 cut(s)	113
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	3 cut(s)	6, 198, 280
HpaII	CCGG	1 cut(s)	295
HphI	GGTGA	3 cut(s)	112, 128, 266
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	2 cut(s)	10, 143
Hpy8I	GTNNAC	1 cut(s)	27
Hpy99I	CGWCG	2 cut(s)	197, 267
HpyAV	CCTTC	2 cut(s)	61, 143
HpyCH4IV	ACGT	2 cut(s)	192, 333
HpyCH4V	TGCA	2 cut(s)	185, 260
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	2 cut(s)	192, 333
Hsp92II	CATG	1 cut(s)	113
HspAI	GCGC	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	74, 214
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	7 cut(s)	152, 171, 192, 203, 237, 257, 308
Lsp1109I	GCAGC	1 cut(s)	48
LweI	GCATC	3 cut(s)	100, 172, 247
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	2 cut(s)	192, 333
MalI	GATC	2 cut(s)	76, 216
MbiI	CCGCTC	1 cut(s)	148
MboI	GATC	2 cut(s)	74, 214
MboII	GAAGA	1 cut(s)	335
MflI	RGATCY	1 cut(s)	74
MlyI	GAGTC	3 cut(s)	15, 207, 289
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	3 cut(s)	6, 114, 150
MspI	CCGG	1 cut(s)	295
MspR9I	CCNGG	1 cut(s)	295
MvnI	CGCG	1 cut(s)	31
NciI	CCSGG	1 cut(s)	295
NdeII	GATC	2 cut(s)	74, 214
NlaIII	CATG	1 cut(s)	113
NlaIV	GGNNCC	1 cut(s)	35
NmeAIII	GCCGAG	1 cut(s)	85
NspI	RCATGY	1 cut(s)	113
PaeI	GCATGC	1 cut(s)	113
PkrI	GCNGC	3 cut(s)	46, 49, 63
PleI	GAGTC	3 cut(s)	14, 206, 288
PpsI	GAGTC	3 cut(s)	14, 206, 288
Psp1406I	AACGTT	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	74
SatI	GCNGC	3 cut(s)	45, 48, 62
Sau3AI	GATC	2 cut(s)	74, 214
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	3 cut(s)	15, 207, 289
ScrFI	CCNGG	1 cut(s)	295
SetI	ASST	2 cut(s)	195, 336
SfaNI	GCATC	3 cut(s)	100, 172, 247
SphI	GCATGC	1 cut(s)	113
SsiI	CCGC	6 cut(s)	31, 45, 48, 89, 130, 148
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	293
TaiI	ACGT	2 cut(s)	195, 336
TaqI	TCGA	2 cut(s)	9, 213
TauI	GCSGC	2 cut(s)	47, 50
TseI	GCWGC	1 cut(s)	61
TspDTI	ATGAA	1 cut(s)	336
TspGWI	ACGGA	1 cut(s)	330
XceI	RCATGY	1 cut(s)	113
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.