Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001930

Physical Location & Seq

Genomic Coordinates Forward (+)

19500225 .. 19501063

Gene Structure 839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG115500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAACATTTAAATTTTGATGAGACCCAGTTGGTGCCATTGGTAACCATTCAGGATTATCATAACGCACTCTCTAGAGGAAATAAGAATAGAGTTGCTGCCATTTTAGATGAAGTCCCTTACCTCAAGTTGATCCTTAAAAAGAACTGTTCCAAGTACACCATGGTTGGACCAACCTACAAAACTGATGGATTTGGCTTTGCTTTCCAATCAGGGTCCTCGCTGGTATCCTACATGTCAAGCGCAATCTTGAACGTGACTCAAGATAAAAATCAGATGGATAAACTTCAGTCGACTTACTTTGATTACTTTGATAACCAACCTGCCTGTGAGGATCAAAGTGCCAAAATTTCTTCAGAGGGTCCAAGTCTTGGTGTCTACAGCTTTGGAGGCCTCTTCATCATCGCAGGTGTGGCCTCCATGGTTGCTCTTTTGATGTACATGTATCACTTCCTTTGCTCTCATTGGCCAGCTTTGCGAACAATTAGTTCTTCTGAGAGCAGATTTTGGGAGAAATTGGTTGAAGTGGCAAAGCATTTTGACAAGAAAGATCTCACTTCACATCAGTTTAAGCGAAGAGAATCAAGAGTACATGCTTTAGACACTCCTGATGAAGGTCTAGCAGCTGCACCGGGTGCTAATGATATGCAAAACAACTCAGCAGGAACTCACATAACAGTGGAGAACAATCTTGGACATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

234

Amino Acids

26.16

Weight (kDa)

5.98

Isoelectric Point (pI)

47.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06680 FvH4_3g38721 FvH4_4g08410 FvH4_6g06360
prunus_persica	Prupe.1G094600_v2.0.a1 Prupe.1G094700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0403951 RchiOBHm_Chr4g0403991 RchiOBHm_Chr4g0404001 RchiOBHm_Chr4g0404021 RchiOBHm_Chr4g0404081
rosa_laevigata	RLG00000008927 RLG00000008928 RLG00000008929 RLG00000008931 RLG00000008934 RLG00000008935 RLG00000008938 RLG00000008939 RLG00000019466 RLG00000027985 RLG00000032399
rosa_multiflora	Rmu_co8070616.1_g000001 Rmu_co8395539.1_g000001 Rmu_sc0003478.1_g000001 Rmu_sc0003483.1_g000003 Rmu_sc0004781.1_g000004 Rmu_sc0005134.1_g000003 Rmu_sc0006579.1_g000019 Rmu_sc0026037.1_g000003
rosa_roxburghii	Rroxscaffold_5G00348550 Rroxscaffold_5G00348600
rosa_rugosa	Rorug04G0046400 Rorug04G0046700 Rorug04G0046700
rosa_samantha	Rh4BG115300 Rh4BG115500 Rh4CG130700 Rh4CG130800 Rh4DG115400 Rh4DG115700
rosa_wichuraiana	Rw4G009780 Rw4G009790 Rw4G009800 Rw4G009930 Rw4G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	398
Acc36I	ACCTGC	2 cut(s)	331, 398
AccB1I	GGYRCC	1 cut(s)	34
AccB7I	CCANNNNNTGG	1 cut(s)	371
AccI	GTMKAC	2 cut(s)	293, 378
AclWI	GGATC	2 cut(s)	127, 342
AcoI	YGGCCR	1 cut(s)	467
AcsI	RAATTY	2 cut(s)	13, 348
AcuI	CTGAAG	2 cut(s)	272, 339
AdeI	CACNNNGTG	1 cut(s)	635
AfaI	GTAC	3 cut(s)	158, 440, 591
AfiI	CCNNNNNNNGG	2 cut(s)	371, 614
AflIII	ACRYGT	2 cut(s)	234, 441
AgsI	TTSAA	2 cut(s)	253, 524
AluBI	AGCT	3 cut(s)	384, 473, 626
AluI	AGCT	3 cut(s)	384, 473, 626
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	2 cut(s)	127, 342
AoxI	GGCC	3 cut(s)	391, 414, 467
ApeKI	GCWGC	3 cut(s)	98, 623, 626
ApoI	RAATTY	2 cut(s)	13, 348
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	3 cut(s)	170, 216, 362
AsuC2I	CCSGG	1 cut(s)	633
AvaII	GGWCC	3 cut(s)	170, 216, 362
BalI	TGGCCA	1 cut(s)	469
BanI	GGYRCC	1 cut(s)	34
BbvI	GCAGC	3 cut(s)	85, 613, 635
BccI	CCATC	2 cut(s)	182, 271
BciVI	GTATCC	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	633
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	2 cut(s)	75, 620
BfmI	CTRYAG	1 cut(s)	379
BfuAI	ACCTGC	2 cut(s)	331, 398
BfuI	GTATCC	1 cut(s)	238
BglII	AGATCT	1 cut(s)	550
BisI	GCNGC	3 cut(s)	99, 624, 627
BlsI	GCNGC	3 cut(s)	100, 625, 628
Bme1390I	CCNGG	1 cut(s)	633
Bme18I	GGWCC	3 cut(s)	170, 216, 362
BmgT120I	GGNCC	3 cut(s)	170, 216, 362
BmiI	GGNNCC	3 cut(s)	36, 217, 363
BmrFI	CCNGG	1 cut(s)	633
BmrI	ACTGGG	1 cut(s)	22
BmuI	ACTGGG	1 cut(s)	22
BpuEI	CTTGAG	2 cut(s)	110, 246
BpuMI	CCSGG	1 cut(s)	633
BsaBI	GATNNNNATC	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	162, 420
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 614
Bse1I	ACTGG	1 cut(s)	28
Bse8I	GATNNNNATC	1 cut(s)	270
BseDI	CCNNGG	2 cut(s)	162, 420
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	2 cut(s)	371, 614
BseMII	CTCAG	2 cut(s)	486, 672
BseNI	ACTGG	1 cut(s)	28
BseXI	GCAGC	3 cut(s)	85, 613, 635
BsgI	GTGCAG	1 cut(s)	612
BshFI	GGCC	3 cut(s)	393, 416, 469
BshNI	GGYRCC	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	632
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	371, 614
BsmAI	GTCTC	1 cut(s)	17
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	3 cut(s)	393, 416, 469
Bso31I	GGTCTC	1 cut(s)	17
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	3 cut(s)	132, 334, 550
Bsp19I	CCATGG	2 cut(s)	162, 420
BspANI	GGCC	3 cut(s)	393, 416, 469
BspCNI	CTCAG	2 cut(s)	487, 671
BspLI	GGNNCC	3 cut(s)	36, 217, 363
BspMI	ACCTGC	2 cut(s)	331, 398
BspPI	GGATC	2 cut(s)	127, 342
BspT107I	GGYRCC	1 cut(s)	34
BspTNI	GGTCTC	1 cut(s)	17
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	28
BssECI	CCNNGG	2 cut(s)	162, 420
BssMI	GATC	3 cut(s)	132, 334, 550
BssT1I	CCWWGG	2 cut(s)	162, 420
Bst4CI	ACNGT	2 cut(s)	149, 679
Bst6I	CTCTTC	2 cut(s)	401, 571
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstAUI	TGTACA	1 cut(s)	438
BstC8I	GCNNGC	1 cut(s)	471
BstDEI	CTNAG	2 cut(s)	495, 658
BstDSI	CCRYGG	2 cut(s)	162, 420
BstEII	GGTNACC	1 cut(s)	43
BstENI	CCTNNNNNAGG	1 cut(s)	612
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	3 cut(s)	135, 337, 553
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	3 cut(s)	132, 334, 550
BstMWI	GCNNNNNNNGC	4 cut(s)	390, 413, 475, 635
BstNSI	RCATGY	3 cut(s)	238, 445, 596
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	631
BstSFI	CTRYAG	1 cut(s)	379
BstV1I	GCAGC	3 cut(s)	85, 613, 635
BstX2I	RGATCY	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	550
BsuI	GTATCC	1 cut(s)	238
BsuRI	GGCC	3 cut(s)	393, 416, 469
BtgI	CCRYGG	2 cut(s)	162, 420
BtgZI	GCGATG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	684
BveI	ACCTGC	2 cut(s)	331, 398
Cac8I	GCNNGC	1 cut(s)	471
CfoI	GCGC	1 cut(s)	245
Cfr13I	GGNCC	3 cut(s)	170, 216, 362
Csp6I	GTAC	3 cut(s)	157, 439, 590
CviAII	CATG	6 cut(s)	163, 235, 421, 442, 593, 698
CviJI	RGCY	7 cut(s)	198, 384, 393, 416, 469, 473, 626
CviKI_1	RGCY	7 cut(s)	198, 384, 393, 416, 469, 473, 626
CviQI	GTAC	3 cut(s)	157, 439, 590
DdeI	CTNAG	2 cut(s)	495, 658
DpnI	GATC	3 cut(s)	134, 336, 552
DpnII	GATC	3 cut(s)	132, 334, 550
DraI	TTTAAA	1 cut(s)	12
DraIII	CACNNNGTG	1 cut(s)	635
EaeI	YGGCCR	1 cut(s)	467
Eam1104I	CTCTTC	2 cut(s)	401, 571
EarI	CTCTTC	2 cut(s)	401, 571
Eco130I	CCWWGG	2 cut(s)	162, 420
Eco147I	AGGCCT	1 cut(s)	393
Eco31I	GGTCTC	1 cut(s)	17
Eco47I	GGWCC	3 cut(s)	170, 216, 362
Eco57I	CTGAAG	2 cut(s)	272, 339
Eco91I	GGTNACC	1 cut(s)	43
EcoNI	CCTNNNNNAGG	1 cut(s)	612
EcoO109I	RGGNCCY	1 cut(s)	216
EcoO65I	GGTNACC	1 cut(s)	43
EcoT14I	CCWWGG	2 cut(s)	162, 420
ErhI	CCWWGG	2 cut(s)	162, 420
FaeI	CATG	6 cut(s)	166, 238, 424, 445, 596, 701
FaiI	YATR	9 cut(s)	63, 164, 236, 422, 443, 594, 647, 674, 699
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	6 cut(s)	162, 234, 420, 441, 592, 697
FblI	GTMKAC	2 cut(s)	293, 378
Fnu4HI	GCNGC	3 cut(s)	99, 624, 627
Fsp4HI	GCNGC	3 cut(s)	99, 624, 627
FspBI	CTAG	2 cut(s)	75, 620
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	3 cut(s)	99, 624, 627
HaeIII	GGCC	3 cut(s)	393, 416, 469
HapII	CCGG	1 cut(s)	632
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	6 cut(s)	166, 238, 424, 445, 596, 701
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HinfI	GANTC	2 cut(s)	259, 581
HpaII	CCGG	1 cut(s)	632
Hpy166II	GTNNAC	3 cut(s)	159, 294, 379
Hpy188I	TCNGA	3 cut(s)	276, 358, 496
Hpy188III	TCNNGA	6 cut(s)	53, 75, 250, 263, 585, 608
Hpy8I	GTNNAC	3 cut(s)	159, 294, 379
HpyAV	CCTTC	1 cut(s)	608
HpyCH4III	ACNGT	2 cut(s)	149, 679
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	2 cut(s)	629, 649
HpyF10VI	GCNNNNNNNGC	4 cut(s)	390, 413, 475, 635
HpyF3I	CTNAG	2 cut(s)	495, 658
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	6 cut(s)	166, 238, 424, 445, 596, 701
HspAI	GCGC	1 cut(s)	243
Kzo9I	GATC	3 cut(s)	132, 334, 550
Lsp1109I	GCAGC	3 cut(s)	85, 613, 635
MaeI	CTAG	2 cut(s)	75, 620
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	2 cut(s)	43, 256
MalI	GATC	3 cut(s)	134, 336, 552
MboI	GATC	3 cut(s)	132, 334, 550
MboII	GAAGA	4 cut(s)	345, 388, 483, 588
MflI	RGATCY	1 cut(s)	550
MlsI	TGGCCA	1 cut(s)	469
MluCI	AATT	4 cut(s)	13, 348, 483, 515
MluNI	TGGCCA	1 cut(s)	469
MlyI	GAGTC	1 cut(s)	253
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	8 cut(s)	71, 134, 229, 325, 352, 383, 404, 427
Mox20I	TGGCCA	1 cut(s)	469
MscI	TGGCCA	1 cut(s)	469
MseI	TTAA	3 cut(s)	11, 138, 570
MslI	CAYNNNNRTG	1 cut(s)	677
Msp20I	TGGCCA	1 cut(s)	469
MspA1I	CMGCKG	1 cut(s)	626
MspI	CCGG	1 cut(s)	632
MspR9I	CCNGG	1 cut(s)	633
MwoI	GCNNNNNNNGC	4 cut(s)	390, 413, 475, 635
NciI	CCSGG	1 cut(s)	633
NcoI	CCATGG	2 cut(s)	162, 420
NdeII	GATC	3 cut(s)	132, 334, 550
NlaIII	CATG	6 cut(s)	166, 238, 424, 445, 596, 701
NlaIV	GGNNCC	3 cut(s)	36, 217, 363
NmuCI	GTSAC	1 cut(s)	256
NspI	RCATGY	3 cut(s)	238, 445, 596
PaqCI	CACCTGC	1 cut(s)	398
PceI	AGGCCT	1 cut(s)	393
PciI	ACATGT	2 cut(s)	234, 441
PfeI	GAWTC	1 cut(s)	581
PflMI	CCANNNNNTGG	1 cut(s)	371
PkrI	GCNGC	3 cut(s)	100, 625, 628
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PpuMI	RGGWCCY	1 cut(s)	216
PscI	ACATGT	2 cut(s)	234, 441
Psp5II	RGGWCCY	1 cut(s)	216
PspEI	GGTNACC	1 cut(s)	43
PspN4I	GGNNCC	3 cut(s)	36, 217, 363
PspPI	GGNCC	3 cut(s)	170, 216, 362
PspPPI	RGGWCCY	1 cut(s)	216
PsuI	RGATCY	1 cut(s)	550
PvuII	CAGCTG	1 cut(s)	626
RsaI	GTAC	3 cut(s)	158, 440, 591
RsaNI	GTAC	3 cut(s)	157, 439, 590
RseI	CAYNNNNRTG	1 cut(s)	677
SalI	GTCGAC	1 cut(s)	292
SaqAI	TTAA	3 cut(s)	11, 138, 570
SatI	GCNGC	3 cut(s)	99, 624, 627
Sau3AI	GATC	3 cut(s)	132, 334, 550
Sau96I	GGNCC	3 cut(s)	170, 216, 362
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	633
SetI	ASST	9 cut(s)	126, 179, 258, 325, 386, 412, 475, 619, 628
SfcI	CTRYAG	1 cut(s)	379
SinI	GGWCC	3 cut(s)	170, 216, 362
SmiI	ATTTAAAT	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	677
SmlI	CTYRAG	2 cut(s)	125, 261
SmoI	CTYRAG	2 cut(s)	125, 261
Sse9I	AATT	4 cut(s)	13, 348, 483, 515
SseBI	AGGCCT	1 cut(s)	393
SspMI	CTAG	2 cut(s)	75, 620
StuI	AGGCCT	1 cut(s)	393
StyD4I	CCNGG	1 cut(s)	631
StyI	CCWWGG	2 cut(s)	162, 420
SwaI	ATTTAAAT	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	149, 679
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	293
TasI	AATT	4 cut(s)	13, 348, 483, 515
TatI	WGTACW	3 cut(s)	156, 438, 589
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	3 cut(s)	11, 138, 570
Tru9I	TTAA	3 cut(s)	11, 138, 570
TscAI	CASTG	1 cut(s)	684
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	3 cut(s)	98, 623, 626
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	3 cut(s)	126, 388, 627
TspRI	CASTG	1 cut(s)	684
Van91I	CCANNNNNTGG	1 cut(s)	371
VpaK11BI	GGWCC	3 cut(s)	170, 216, 362
XagI	CCTNNNNNAGG	1 cut(s)	612
XapI	RAATTY	2 cut(s)	13, 348
XbaI	TCTAGA	1 cut(s)	74
XceI	RCATGY	3 cut(s)	238, 445, 596
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XmiI	GTMKAC	2 cut(s)	293, 378
XspI	CTAG	2 cut(s)	75, 620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.