Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001930

Physical Location & Seq

Genomic Coordinates Reverse (-)

43108301 .. 43109242

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008934

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTTAACAGTACAGAAGTTGCAGCCTGCATTCACTGATATAAAAGAGATACAAAGAAATGGTTACAAAGTAGGATATCAAAATAGTTCCTTTATTACAGGGTTTCTCATGGAACATTTAAATTTTGATGAGACCAAGTTGGAGCCATTGGTAACCATTCAGGATTACCATAACGCACTCTCTAGAGGAAATAAGAATAGAGTTGCTGCCATTTTAGATGAAGTCCCTTACCTCAAGTTGATCCTTAAAGAGAACTGTTCCAAGTACACCATGGTTGGACCAACCTACAAAACTGATGGATTTGGCTTTGCTTTCCAATCAGGGTCCTCGCTGGTATCCTACATGTCAAGTGCAATCTTAAACGTGACTCAAGATAAAAATCAGATGGATAAACTTCAGTCGACTTACTTTGATTACTTTGATAACCAACCTGCCTGTGAGGATCAAAGTGCCAAAATTTCTTCAGAGGGTCCAAGTCTTGGTGTCTACAGCTTCGGAGGCCTCTTCATCATCGCAGGTGTGGTCTCCATGGTTGCTCTTTTGATGTACATGTATCACTTCCTTTGCTCTCATTGGCCAGCTTTGCGAACAATTAGTTCTTCTAAGAGCAGATTTTGGGAGAAATTGGTTGAAGTTGCAAAGCATTTTGACAAGAAAGATCTCACTTCACATCAGTTTAATCGAAGAGAATCAAGAGTACATGCTTTAGACACTCCTGATGAAGGTCTAGCAGCTGCACCGGGTGCTAATGATATGCAAAACAACTCAGCAGGAACTCACATAATAGTGGAGAACAATCTTGGACATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

271

Amino Acids

30.34

Weight (kDa)

6.14

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06680 FvH4_3g38721 FvH4_4g08410 FvH4_6g06360
prunus_persica	Prupe.1G094600_v2.0.a1 Prupe.1G094700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0403951 RchiOBHm_Chr4g0403991 RchiOBHm_Chr4g0404001 RchiOBHm_Chr4g0404021 RchiOBHm_Chr4g0404081
rosa_laevigata	RLG00000008927 RLG00000008928 RLG00000008929 RLG00000008931 RLG00000008934 RLG00000008935 RLG00000008938 RLG00000008939 RLG00000019466 RLG00000027985 RLG00000032399
rosa_multiflora	Rmu_co8070616.1_g000001 Rmu_co8395539.1_g000001 Rmu_sc0003478.1_g000001 Rmu_sc0003483.1_g000003 Rmu_sc0004781.1_g000004 Rmu_sc0005134.1_g000003 Rmu_sc0006579.1_g000019 Rmu_sc0026037.1_g000003
rosa_roxburghii	Rroxscaffold_5G00348550 Rroxscaffold_5G00348600
rosa_rugosa	Rorug04G0046400 Rorug04G0046700 Rorug04G0046700
rosa_samantha	Rh4BG115300 Rh4BG115500 Rh4CG130700 Rh4CG130800 Rh4DG115400 Rh4DG115700
rosa_wichuraiana	Rw4G009780 Rw4G009790 Rw4G009800 Rw4G009930 Rw4G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	506
Acc36I	ACCTGC	2 cut(s)	439, 506
AccB7I	CCANNNNNTGG	1 cut(s)	479
AccI	GTMKAC	2 cut(s)	401, 486
AclWI	GGATC	2 cut(s)	235, 450
AcoI	YGGCCR	1 cut(s)	575
AcsI	RAATTY	2 cut(s)	121, 456
AcuI	CTGAAG	2 cut(s)	380, 447
AdeI	CACNNNGTG	1 cut(s)	743
AfaI	GTAC	4 cut(s)	12, 266, 548, 699
AfiI	CCNNNNNNNGG	2 cut(s)	479, 722
AflIII	ACRYGT	2 cut(s)	342, 549
AgsI	TTSAA	1 cut(s)	632
AluBI	AGCT	3 cut(s)	492, 581, 734
AluI	AGCT	3 cut(s)	492, 581, 734
Alw26I	GTCTC	2 cut(s)	125, 529
AlwI	GGATC	2 cut(s)	235, 450
AoxI	GGCC	2 cut(s)	499, 575
ApeKI	GCWGC	4 cut(s)	22, 206, 731, 734
ApoI	RAATTY	2 cut(s)	121, 456
AspS9I	GGNCC	3 cut(s)	278, 324, 470
AsuC2I	CCSGG	1 cut(s)	741
AvaII	GGWCC	3 cut(s)	278, 324, 470
BalI	TGGCCA	1 cut(s)	577
BbvI	GCAGC	4 cut(s)	34, 193, 721, 743
BccI	CCATC	2 cut(s)	290, 379
BciVI	GTATCC	1 cut(s)	346
BcnI	CCSGG	1 cut(s)	741
BcoDI	GTCTC	2 cut(s)	125, 529
BfaI	CTAG	2 cut(s)	183, 728
BfmI	CTRYAG	1 cut(s)	487
BfuAI	ACCTGC	2 cut(s)	439, 506
BfuI	GTATCC	1 cut(s)	346
BglII	AGATCT	1 cut(s)	658
BisI	GCNGC	4 cut(s)	23, 207, 732, 735
BlsI	GCNGC	4 cut(s)	24, 208, 733, 736
Bme1390I	CCNGG	1 cut(s)	741
Bme18I	GGWCC	3 cut(s)	278, 324, 470
BmgT120I	GGNCC	3 cut(s)	278, 324, 470
BmiI	GGNNCC	3 cut(s)	144, 325, 471
BmrFI	CCNGG	1 cut(s)	741
BpuEI	CTTGAG	2 cut(s)	218, 354
BpuMI	CCSGG	1 cut(s)	741
BsaBI	GATNNNNATC	1 cut(s)	378
BsaI	GGTCTC	2 cut(s)	125, 529
BsaJI	CCNNGG	2 cut(s)	270, 528
Bsc4I	CCNNNNNNNGG	2 cut(s)	479, 722
Bse8I	GATNNNNATC	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	270, 528
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	2 cut(s)	479, 722
BseMII	CTCAG	1 cut(s)	780
BseXI	GCAGC	4 cut(s)	34, 193, 721, 743
BsgI	GTGCAG	1 cut(s)	720
BshFI	GGCC	2 cut(s)	501, 577
BsiSI	CCGG	1 cut(s)	740
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	2 cut(s)	479, 722
BsmAI	GTCTC	2 cut(s)	125, 529
BsmFI	GGGAC	1 cut(s)	209
BsmI	GAATGC	1 cut(s)	29
BsnI	GGCC	2 cut(s)	501, 577
Bso31I	GGTCTC	2 cut(s)	125, 529
Bsp1407I	TGTACA	1 cut(s)	546
Bsp143I	GATC	3 cut(s)	240, 442, 658
Bsp19I	CCATGG	2 cut(s)	270, 528
BspANI	GGCC	2 cut(s)	501, 577
BspCNI	CTCAG	1 cut(s)	779
BspLI	GGNNCC	3 cut(s)	144, 325, 471
BspMI	ACCTGC	2 cut(s)	439, 506
BspPI	GGATC	2 cut(s)	235, 450
BspTNI	GGTCTC	2 cut(s)	125, 529
BsrGI	TGTACA	1 cut(s)	546
BssECI	CCNNGG	2 cut(s)	270, 528
BssMI	GATC	3 cut(s)	240, 442, 658
BssT1I	CCWWGG	2 cut(s)	270, 528
Bst4CI	ACNGT	2 cut(s)	10, 257
Bst6I	CTCTTC	2 cut(s)	509, 679
BstAPI	GCANNNNNTGC	1 cut(s)	743
BstAUI	TGTACA	1 cut(s)	546
BstC8I	GCNNGC	2 cut(s)	27, 579
BstDEI	CTNAG	2 cut(s)	603, 766
BstDSI	CCRYGG	2 cut(s)	270, 528
BstEII	GGTNACC	1 cut(s)	151
BstENI	CCTNNNNNAGG	1 cut(s)	720
BstKTI	GATC	3 cut(s)	243, 445, 661
BstMAI	GTCTC	2 cut(s)	125, 529
BstMBI	GATC	3 cut(s)	240, 442, 658
BstMWI	GCNNNNNNNGC	3 cut(s)	498, 583, 743
BstNSI	RCATGY	3 cut(s)	346, 553, 704
BstPI	GGTNACC	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	739
BstSFI	CTRYAG	1 cut(s)	487
BstV1I	GCAGC	4 cut(s)	34, 193, 721, 743
BstX2I	RGATCY	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	658
BsuI	GTATCC	1 cut(s)	346
BsuRI	GGCC	2 cut(s)	501, 577
BtgI	CCRYGG	2 cut(s)	270, 528
BtgZI	GCGATG	1 cut(s)	496
BtsIMutI	CAGTG	1 cut(s)	33
BveI	ACCTGC	2 cut(s)	439, 506
Cac8I	GCNNGC	2 cut(s)	27, 579
Cfr13I	GGNCC	3 cut(s)	278, 324, 470
Csp6I	GTAC	4 cut(s)	11, 265, 547, 698
CviAII	CATG	7 cut(s)	109, 271, 343, 529, 550, 701, 806
CviJI	RGCY	8 cut(s)	25, 145, 306, 492, 501, 577, 581, 734
CviKI_1	RGCY	8 cut(s)	25, 145, 306, 492, 501, 577, 581, 734
CviQI	GTAC	4 cut(s)	11, 265, 547, 698
DdeI	CTNAG	2 cut(s)	603, 766
DpnI	GATC	3 cut(s)	242, 444, 660
DpnII	GATC	3 cut(s)	240, 442, 658
DraI	TTTAAA	1 cut(s)	120
DraIII	CACNNNGTG	1 cut(s)	743
EaeI	YGGCCR	1 cut(s)	575
Eam1104I	CTCTTC	2 cut(s)	509, 679
EarI	CTCTTC	2 cut(s)	509, 679
Eco130I	CCWWGG	2 cut(s)	270, 528
Eco147I	AGGCCT	1 cut(s)	501
Eco31I	GGTCTC	2 cut(s)	125, 529
Eco32I	GATATC	1 cut(s)	77
Eco47I	GGWCC	3 cut(s)	278, 324, 470
Eco57I	CTGAAG	2 cut(s)	380, 447
Eco91I	GGTNACC	1 cut(s)	151
EcoNI	CCTNNNNNAGG	1 cut(s)	720
EcoO109I	RGGNCCY	1 cut(s)	324
EcoO65I	GGTNACC	1 cut(s)	151
EcoRV	GATATC	1 cut(s)	77
EcoT14I	CCWWGG	2 cut(s)	270, 528
ErhI	CCWWGG	2 cut(s)	270, 528
FaeI	CATG	7 cut(s)	112, 274, 346, 532, 553, 704, 809
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	7 cut(s)	108, 270, 342, 528, 549, 700, 805
FblI	GTMKAC	2 cut(s)	401, 486
Fnu4HI	GCNGC	4 cut(s)	23, 207, 732, 735
Fsp4HI	GCNGC	4 cut(s)	23, 207, 732, 735
FspBI	CTAG	2 cut(s)	183, 728
GluI	GCNGC	4 cut(s)	23, 207, 732, 735
HaeIII	GGCC	2 cut(s)	501, 577
HapII	CCGG	1 cut(s)	740
Hin1II	CATG	7 cut(s)	112, 274, 346, 532, 553, 704, 809
HincII	GTYRAC	2 cut(s)	6, 402
HindII	GTYRAC	2 cut(s)	6, 402
HinfI	GANTC	2 cut(s)	367, 689
HpaI	GTTAAC	1 cut(s)	6
HpaII	CCGG	1 cut(s)	740
Hpy166II	GTNNAC	4 cut(s)	6, 267, 402, 487
Hpy188I	TCNGA	3 cut(s)	384, 466, 497
Hpy188III	TCNNGA	5 cut(s)	161, 183, 371, 693, 716
Hpy8I	GTNNAC	4 cut(s)	6, 267, 402, 487
HpyAV	CCTTC	1 cut(s)	716
HpyCH4III	ACNGT	2 cut(s)	10, 257
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	6 cut(s)	22, 29, 353, 638, 737, 757
HpyF10VI	GCNNNNNNNGC	3 cut(s)	498, 583, 743
HpyF3I	CTNAG	2 cut(s)	603, 766
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	7 cut(s)	112, 274, 346, 532, 553, 704, 809
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	240, 442, 658
LmnI	GCTCC	1 cut(s)	142
Lsp1109I	GCAGC	4 cut(s)	34, 193, 721, 743
MaeI	CTAG	2 cut(s)	183, 728
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	3 cut(s)	62, 151, 364
MalI	GATC	3 cut(s)	242, 444, 660
MboI	GATC	3 cut(s)	240, 442, 658
MboII	GAAGA	4 cut(s)	453, 496, 591, 696
MflI	RGATCY	1 cut(s)	658
MlsI	TGGCCA	1 cut(s)	577
MluCI	AATT	4 cut(s)	121, 456, 591, 623
MluNI	TGGCCA	1 cut(s)	577
MlyI	GAGTC	1 cut(s)	361
MmeI	TCCRAC	2 cut(s)	120, 256
MnlI	CCTC	7 cut(s)	179, 242, 337, 433, 460, 491, 512
Mox20I	TGGCCA	1 cut(s)	577
MscI	TGGCCA	1 cut(s)	577
MseI	TTAA	5 cut(s)	5, 119, 246, 359, 678
MslI	CAYNNNNRTG	1 cut(s)	785
Msp20I	TGGCCA	1 cut(s)	577
MspA1I	CMGCKG	1 cut(s)	734
MspI	CCGG	1 cut(s)	740
MspR9I	CCNGG	1 cut(s)	741
Mva1269I	GAATGC	1 cut(s)	29
MwoI	GCNNNNNNNGC	3 cut(s)	498, 583, 743
NciI	CCSGG	1 cut(s)	741
NcoI	CCATGG	2 cut(s)	270, 528
NdeII	GATC	3 cut(s)	240, 442, 658
NlaIII	CATG	7 cut(s)	112, 274, 346, 532, 553, 704, 809
NlaIV	GGNNCC	3 cut(s)	144, 325, 471
NmuCI	GTSAC	1 cut(s)	364
NspI	RCATGY	3 cut(s)	346, 553, 704
PaqCI	CACCTGC	1 cut(s)	506
PceI	AGGCCT	1 cut(s)	501
PciI	ACATGT	2 cut(s)	342, 549
PctI	GAATGC	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	689
PflMI	CCANNNNNTGG	1 cut(s)	479
PkrI	GCNGC	4 cut(s)	24, 208, 733, 736
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
PpuMI	RGGWCCY	1 cut(s)	324
PscI	ACATGT	2 cut(s)	342, 549
Psp5II	RGGWCCY	1 cut(s)	324
PspEI	GGTNACC	1 cut(s)	151
PspN4I	GGNNCC	3 cut(s)	144, 325, 471
PspPI	GGNCC	3 cut(s)	278, 324, 470
PspPPI	RGGWCCY	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	658
PvuII	CAGCTG	1 cut(s)	734
RsaI	GTAC	4 cut(s)	12, 266, 548, 699
RsaNI	GTAC	4 cut(s)	11, 265, 547, 698
RseI	CAYNNNNRTG	1 cut(s)	785
SalI	GTCGAC	1 cut(s)	400
SaqAI	TTAA	5 cut(s)	5, 119, 246, 359, 678
SatI	GCNGC	4 cut(s)	23, 207, 732, 735
Sau3AI	GATC	3 cut(s)	240, 442, 658
Sau96I	GGNCC	3 cut(s)	278, 324, 470
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	741
SetI	ASST	9 cut(s)	234, 287, 366, 433, 494, 520, 583, 727, 736
SfcI	CTRYAG	1 cut(s)	487
SinI	GGWCC	3 cut(s)	278, 324, 470
SmiI	ATTTAAAT	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	785
SmlI	CTYRAG	2 cut(s)	233, 369
SmoI	CTYRAG	2 cut(s)	233, 369
Sse9I	AATT	4 cut(s)	121, 456, 591, 623
SseBI	AGGCCT	1 cut(s)	501
SspMI	CTAG	2 cut(s)	183, 728
StuI	AGGCCT	1 cut(s)	501
StyD4I	CCNGG	1 cut(s)	739
StyI	CCWWGG	2 cut(s)	270, 528
SwaI	ATTTAAAT	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	10, 257
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	2 cut(s)	401, 682
TasI	AATT	4 cut(s)	121, 456, 591, 623
TatI	WGTACW	4 cut(s)	10, 264, 546, 697
TfiI	GAWTC	1 cut(s)	689
Tru1I	TTAA	5 cut(s)	5, 119, 246, 359, 678
Tru9I	TTAA	5 cut(s)	5, 119, 246, 359, 678
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	4 cut(s)	22, 206, 731, 734
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	3 cut(s)	234, 496, 735
TspRI	CASTG	1 cut(s)	40
Van91I	CCANNNNNTGG	1 cut(s)	479
VpaK11BI	GGWCC	3 cut(s)	278, 324, 470
XagI	CCTNNNNNAGG	1 cut(s)	720
XapI	RAATTY	2 cut(s)	121, 456
XbaI	TCTAGA	1 cut(s)	182
XceI	RCATGY	3 cut(s)	346, 553, 704
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
XmiI	GTMKAC	2 cut(s)	401, 486
XspI	CTAG	2 cut(s)	183, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.