Rw4G009780

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
22229252 .. 22231578
2327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G009780.1

Sequence Viewer

Length: 1527 bp
ATGACTGCTTCCCTTGGGTCCAAATTCTTTTTCTTAGCAAGTAAGGCAGGGATGATGACTGAAGGGTATGGATGGATTGTTACGGAAGGGTTATCGACTTTATTAGATCCTGTGGGTTCAAGAACCATGGACTCAATGCAAGCTGTAGTGGGGGTAAGGCCATATATACCAATGTCAAAAGAACTTAAAGACTTCGTAGTTGATCTTGCAAGTTTGGGAACTGGTGACAGGGGTCAAAATCTTCTTGAAGCTATCCTAGATTTAAAATTTGAAAACCTCAGTTGGAATTTCCGGTTGGCTAAGGGACAGTTGGAAGCTTCAACCTTTGAGGTATTTAATGTGATTGGCGGAAAAGAAAGAATAATTGGATATTGGAACCAAATGAAAGGACTTTCCCGGAAGCTGAATGGAGCAGCAAAGTTGGATAAATATGATGCTGTGGTGGGAGACACAACAATTGTAGCTAATCGCTCATTATATGTAGATTTTACGTTGCCTTATTCTGAATCAGGAGTTTCCATGATAGTTTTGACAGAAGATAGTGAGAGGAATAGTGTTTGGATTTTCTTGAAGCCACTAAGCTTGGGTCTTTGGTTGACAACCGGCGTAGCCTTCATATTTACAGGTTTTGTAATATGGCTTCTTGAGCACCGGGAAAACACCGAGTTCAGAGGTCCTCCACAGAAACAACTTGGCATGATATTCTGGTTCTCCTTTTCAACCCTCGTCTTTGCACACAGAGAGAAAGTGGTGAACAATTGGTCAAGGTTTGTGCTGATTATATGGGTTTTTGTGGTACTGATCCTAACACAGAGTTACACTGCAAGCTTAGCCTCGATGTTAACAGTACAGAAATTGCAGCCTGCATTCACTGATATAAAAGAGATACAAGGAAATGGTTACAAAGTAGGATATCAAAATAGTTCCTTTATTAAAGGGTTTCTCATGGAACATTTAAATTTTGATGAGACCCAGTTGGTGCCATTGGTAACCATGCAGGATTATCATAACGCACTCTCTAGAGGAAATAAGAATAGAGTTGCTGCCATTTTAGATGAAGTCCCTTACCTCAAGTTGATCCTTAAAAAGAACTGTTCCAAGTACACCATGGTTGGACCAACCTACAAAACTGATGGATTTGGCTTTGCTTTCCAATCAGGGTCCTCGCTGGTATCCTACATGTCAAGCGCAATCTTGAACGTGACTCAAGATAAAAATCAGATGGATAGACTTCAGTCGACATACTTTGATTACTTTGATAACCAACCTGCCTGTGAGGATCAAAGTGCCAAAATTTCTTCAGAGGGTCCAAGTCTAGGTGTCTACAGCTTTGGAGGCCTCTTCATCATCGCAGGTGTGGCCTCCACGGTTGCTCTTTTGATGTACATGTATCACTTCCTTTGCTCTCATTGGCCAGCTTTGCGAATAATTAGTTCTTCTGAGAGCAGATTTTGGGAGAAATTGGTTGAAGTGGCAAAGCATTTTGACAAGAAAGCATTATGCCAAAAAGGCCTTCAGACGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

508

Amino Acids

57.08

Weight (kDa)

8.12

Isoelectric Point (pI)

30.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 3 - 66 3.8e-09 Receptor family ligand binding region
Lig_chan PF00060 195 - 454 9.6e-37 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1343
Acc36I ACCTGC 2 cut(s) 1276, 1343
AccB1I GGYRCC 1 cut(s) 979
AccI GTMKAC 2 cut(s) 1238, 1323
AciI CCGC 1 cut(s) 348
AclWI GGATC 4 cut(s) 101, 796, 1072, 1287
AcoI YGGCCR 1 cut(s) 1412
AcsI RAATTY 5 cut(s) 23, 266, 286, 958, 1293
AcuI CTGAAG 4 cut(s) 81, 1217, 1284, 1499
AfaI GTAC 4 cut(s) 798, 849, 1103, 1385
AfiI CCNNNNNNNGG 1 cut(s) 1316
AflIII ACRYGT 2 cut(s) 1179, 1386
AgsI TTSAA 8 cut(s) 120, 248, 272, 321, 571, 720, 1198, 1469
AjuI GAANNNNNNNTTGG 7 cut(s) 14, 46, 278, 310, 348, 380, 1497
AluBI AGCT 9 cut(s) 143, 251, 317, 403, 464, 582, 828, 1329, 1418
AluI AGCT 9 cut(s) 143, 251, 317, 403, 464, 582, 828, 1329, 1418
Alw21I GWGCWC 1 cut(s) 651
Alw26I GTCTC 2 cut(s) 441, 962
AlwI GGATC 4 cut(s) 101, 796, 1072, 1287
AoxI GGCC 5 cut(s) 158, 1336, 1359, 1412, 1510
ApeKI GCWGC 3 cut(s) 413, 859, 1043
ApoI RAATTY 5 cut(s) 23, 266, 286, 958, 1293
AspLEI GCGC 1 cut(s) 1190
AspS9I GGNCC 5 cut(s) 18, 674, 1115, 1161, 1307
AsuC2I CCSGG 2 cut(s) 397, 653
AsuHPI GGTGA 2 cut(s) 236, 763
AvaII GGWCC 5 cut(s) 18, 674, 1115, 1161, 1307
BalI TGGCCA 1 cut(s) 1414
BanI GGYRCC 1 cut(s) 979
BarI GAAGNNNNNNTAC 2 cut(s) 624, 656
Bbv12I GWGCWC 1 cut(s) 651
BbvI GCAGC 3 cut(s) 425, 871, 1030
BccI CCATC 3 cut(s) 66, 1127, 1216
BciVI GTATCC 1 cut(s) 1183
BcnI CCSGG 2 cut(s) 397, 653
BcoDI GTCTC 2 cut(s) 441, 962
BfaI CTAG 3 cut(s) 257, 1020, 1316
BfmI CTRYAG 2 cut(s) 144, 1324
BfuAI ACCTGC 2 cut(s) 1276, 1343
BfuI GTATCC 1 cut(s) 1183
BglI GCCNNNNNGGC 1 cut(s) 1509
BisI GCNGC 3 cut(s) 414, 860, 1044
BlpI GCTNAGC 1 cut(s) 829
BlsI GCNGC 3 cut(s) 415, 861, 1045
Bme1390I CCNGG 2 cut(s) 397, 653
Bme18I GGWCC 5 cut(s) 18, 674, 1115, 1161, 1307
BmgT120I GGNCC 5 cut(s) 18, 674, 1115, 1161, 1307
BmiI GGNNCC 5 cut(s) 19, 377, 981, 1162, 1308
BmrFI CCNGG 2 cut(s) 397, 653
BmrI ACTGGG 1 cut(s) 967
BmsI GCATC 1 cut(s) 424
BmuI ACTGGG 1 cut(s) 967
BoxI GACNNNNGTC 2 cut(s) 231, 1234
Bpu10I CCTNAGC 1 cut(s) 300
Bpu1102I GCTNAGC 1 cut(s) 829
BpuEI CTTGAG 3 cut(s) 665, 1055, 1191
BpuMI CCSGG 2 cut(s) 397, 653
BsaBI GATNNNNATC 1 cut(s) 1215
BsaI GGTCTC 1 cut(s) 962
BsaJI CCNNGG 4 cut(s) 13, 126, 1107, 1365
BsaWI WCCGGW 1 cut(s) 291
Bsc4I CCNNNNNNNGG 1 cut(s) 1316
Bse118I RCCGGY 1 cut(s) 602
Bse1I ACTGG 2 cut(s) 226, 973
Bse8I GATNNNNATC 1 cut(s) 1215
BseDI CCNNGG 4 cut(s) 13, 126, 1107, 1365
BseGI GGATG 2 cut(s) 57, 77
BseJI GATNNNNATC 1 cut(s) 1215
BseLI CCNNNNNNNGG 1 cut(s) 1316
BseMII CTCAG 2 cut(s) 292, 1431
BseNI ACTGG 2 cut(s) 226, 973
BseXI GCAGC 3 cut(s) 425, 871, 1030
BshFI GGCC 5 cut(s) 160, 1338, 1361, 1414, 1512
BshNI GGYRCC 1 cut(s) 979
BsiHKAI GWGCWC 1 cut(s) 651
BsiSI CCGG 4 cut(s) 292, 397, 603, 652
BslFI GGGAC 2 cut(s) 318, 1046
BslI CCNNNNNNNGG 1 cut(s) 1316
BsmAI GTCTC 2 cut(s) 441, 962
BsmFI GGGAC 2 cut(s) 318, 1046
BsmI GAATGC 1 cut(s) 866
BsnI GGCC 5 cut(s) 160, 1338, 1361, 1414, 1512
Bso31I GGTCTC 1 cut(s) 962
Bsp1286I GDGCHC 1 cut(s) 651
Bsp1407I TGTACA 1 cut(s) 1383
Bsp143I GATC 5 cut(s) 106, 202, 801, 1077, 1279
Bsp1720I GCTNAGC 1 cut(s) 829
Bsp19I CCATGG 2 cut(s) 126, 1107
BspACI CCGC 1 cut(s) 348
BspANI GGCC 5 cut(s) 160, 1338, 1361, 1414, 1512
BspCNI CTCAG 2 cut(s) 291, 1432
BspLI GGNNCC 5 cut(s) 19, 377, 981, 1162, 1308
BspMI ACCTGC 2 cut(s) 1276, 1343
BspPI GGATC 4 cut(s) 101, 796, 1072, 1287
BspT107I GGYRCC 1 cut(s) 979
BspTNI GGTCTC 1 cut(s) 962
BsrFI RCCGGY 1 cut(s) 602
BsrGI TGTACA 1 cut(s) 1383
BsrI ACTGG 2 cut(s) 226, 973
BssAI RCCGGY 1 cut(s) 602
BssECI CCNNGG 4 cut(s) 13, 126, 1107, 1365
BssMI GATC 5 cut(s) 106, 202, 801, 1077, 1279
BssT1I CCWWGG 3 cut(s) 13, 126, 1107
Bst4CI ACNGT 4 cut(s) 309, 847, 1094, 1369
Bst6I CTCTTC 1 cut(s) 1346
BstAUI TGTACA 1 cut(s) 1383
BstC8I GCNNGC 4 cut(s) 141, 826, 864, 1416
BstDEI CTNAG 6 cut(s) 34, 278, 300, 578, 829, 1440
BstDSI CCRYGG 3 cut(s) 126, 1107, 1365
BstEII GGTNACC 1 cut(s) 988
BstF5I GGATG 2 cut(s) 57, 77
BstHHI GCGC 1 cut(s) 1190
BstKTI GATC 5 cut(s) 109, 205, 804, 1080, 1282
BstMAI GTCTC 2 cut(s) 441, 962
BstMBI GATC 5 cut(s) 106, 202, 801, 1077, 1279
BstMWI GCNNNNNNNGC 7 cut(s) 44, 646, 830, 1335, 1358, 1420, 1509
BstNSI RCATGY 2 cut(s) 1183, 1390
BstPAI GACNNNNGTC 2 cut(s) 231, 1234
BstPI GGTNACC 1 cut(s) 988
BstSCI CCNGG 2 cut(s) 395, 651
BstSFI CTRYAG 2 cut(s) 144, 1324
BstV1I GCAGC 3 cut(s) 425, 871, 1030
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuI GTATCC 1 cut(s) 1183
BsuRI GGCC 5 cut(s) 160, 1338, 1361, 1414, 1512
BtgI CCRYGG 3 cut(s) 126, 1107, 1365
BtgZI GCGATG 1 cut(s) 1333
BtsCI GGATG 2 cut(s) 57, 77
BtsI GCAGTG 1 cut(s) 819
BtsIMutI CAGTG 2 cut(s) 819, 870
BveI ACCTGC 2 cut(s) 1276, 1343
Cac8I GCNNGC 4 cut(s) 141, 826, 864, 1416
CfoI GCGC 1 cut(s) 1190
Cfr10I RCCGGY 1 cut(s) 602
Cfr13I GGNCC 5 cut(s) 18, 674, 1115, 1161, 1307
Csp6I GTAC 4 cut(s) 797, 848, 1102, 1384
CspCI CAANNNNNGTGG 2 cut(s) 564, 599
CviAII CATG 8 cut(s) 127, 520, 697, 946, 994, 1108, 1180, 1387
CviQI GTAC 4 cut(s) 797, 848, 1102, 1384
DdeI CTNAG 6 cut(s) 34, 278, 300, 578, 829, 1440
DpnI GATC 5 cut(s) 108, 204, 803, 1079, 1281
DpnII GATC 5 cut(s) 106, 202, 801, 1077, 1279
DraI TTTAAA 2 cut(s) 264, 957
EaeI YGGCCR 1 cut(s) 1412
Eam1104I CTCTTC 1 cut(s) 1346
EarI CTCTTC 1 cut(s) 1346
EciI GGCGGA 1 cut(s) 363
Eco130I CCWWGG 3 cut(s) 13, 126, 1107
Eco147I AGGCCT 2 cut(s) 1338, 1512
Eco31I GGTCTC 1 cut(s) 962
Eco32I GATATC 1 cut(s) 914
Eco47I GGWCC 5 cut(s) 18, 674, 1115, 1161, 1307
Eco57I CTGAAG 4 cut(s) 81, 1217, 1284, 1499
Eco91I GGTNACC 1 cut(s) 988
EcoO109I RGGNCCY 2 cut(s) 674, 1161
EcoO65I GGTNACC 1 cut(s) 988
EcoRV GATATC 1 cut(s) 914
EcoT14I CCWWGG 3 cut(s) 13, 126, 1107
ErhI CCWWGG 3 cut(s) 13, 126, 1107
FaeI CATG 8 cut(s) 130, 523, 700, 949, 997, 1111, 1183, 1390
FaqI GGGAC 2 cut(s) 318, 1046
FatI CATG 8 cut(s) 126, 519, 696, 945, 993, 1107, 1179, 1386
FblI GTMKAC 2 cut(s) 1238, 1323
Fnu4HI GCNGC 3 cut(s) 414, 860, 1044
FokI GGATG 2 cut(s) 64, 84
Fsp4HI GCNGC 3 cut(s) 414, 860, 1044
FspBI CTAG 3 cut(s) 257, 1020, 1316
GlaI GCGC 1 cut(s) 1189
GluI GCNGC 3 cut(s) 414, 860, 1044
HaeIII GGCC 5 cut(s) 160, 1338, 1361, 1414, 1512
HapII CCGG 4 cut(s) 292, 397, 603, 652
HhaI GCGC 1 cut(s) 1190
Hin1II CATG 8 cut(s) 130, 523, 700, 949, 997, 1111, 1183, 1390
Hin6I GCGC 1 cut(s) 1188
HinP1I GCGC 1 cut(s) 1188
HincII GTYRAC 3 cut(s) 597, 843, 1239
HindII GTYRAC 3 cut(s) 597, 843, 1239
HindIII AAGCTT 3 cut(s) 315, 580, 826
HinfI GANTC 3 cut(s) 131, 506, 1204
HpaI GTTAAC 1 cut(s) 843
HpaII CCGG 4 cut(s) 292, 397, 603, 652
HphI GGTGA 2 cut(s) 236, 763
Hpy166II GTNNAC 6 cut(s) 597, 754, 843, 1104, 1239, 1324
Hpy188I TCNGA 6 cut(s) 505, 671, 1221, 1303, 1441, 1518
Hpy188III TCNNGA 8 cut(s) 120, 245, 510, 568, 644, 1020, 1195, 1208
Hpy8I GTNNAC 6 cut(s) 597, 754, 843, 1104, 1239, 1324
HpyAV CCTTC 4 cut(s) 56, 80, 622, 1523
HpyCH4III ACNGT 4 cut(s) 309, 847, 1094, 1369
HpyCH4IV ACGT 2 cut(s) 491, 1200
HpyCH4V TGCA 7 cut(s) 139, 209, 734, 824, 859, 866, 997
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 646, 830, 1335, 1358, 1420, 1509
HpyF3I CTNAG 6 cut(s) 34, 278, 300, 578, 829, 1440
HpySE526I ACGT 2 cut(s) 491, 1200
Hsp92II CATG 8 cut(s) 130, 523, 700, 949, 997, 1111, 1183, 1390
HspAI GCGC 1 cut(s) 1188
KspAI GTTAAC 1 cut(s) 843
Kzo9I GATC 5 cut(s) 106, 202, 801, 1077, 1279
LmnI GCTCC 1 cut(s) 410
Lsp1109I GCAGC 3 cut(s) 425, 871, 1030
LweI GCATC 1 cut(s) 424
MaeI CTAG 3 cut(s) 257, 1020, 1316
MaeII ACGT 2 cut(s) 491, 1200
MaeIII GTNAC 6 cut(s) 79, 224, 815, 899, 988, 1201
MalI GATC 5 cut(s) 108, 204, 803, 1079, 1281
MboI GATC 5 cut(s) 106, 202, 801, 1077, 1279
MboII GAAGA 5 cut(s) 233, 548, 1290, 1333, 1428
MfeI CAATTG 2 cut(s) 456, 757
MflI RGATCY 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 651
MlsI TGGCCA 1 cut(s) 1414
MluNI TGGCCA 1 cut(s) 1414
MlyI GAGTC 2 cut(s) 125, 1198
MmeI TCCRAC 4 cut(s) 263, 291, 402, 1093
Mox20I TGGCCA 1 cut(s) 1414
MscI TGGCCA 1 cut(s) 1414
MseI TTAA 7 cut(s) 186, 263, 336, 842, 933, 956, 1083
Msp20I TGGCCA 1 cut(s) 1414
MspI CCGG 4 cut(s) 292, 397, 603, 652
MspR9I CCNGG 2 cut(s) 397, 653
MunI CAATTG 2 cut(s) 456, 757
Mva1269I GAATGC 1 cut(s) 866
MwoI GCNNNNNNNGC 7 cut(s) 44, 646, 830, 1335, 1358, 1420, 1509
NciI CCSGG 2 cut(s) 397, 653
NcoI CCATGG 2 cut(s) 126, 1107
NdeII GATC 5 cut(s) 106, 202, 801, 1077, 1279
NlaIII CATG 8 cut(s) 130, 523, 700, 949, 997, 1111, 1183, 1390
NlaIV GGNNCC 5 cut(s) 19, 377, 981, 1162, 1308
NmuCI GTSAC 2 cut(s) 224, 1201
NspI RCATGY 2 cut(s) 1183, 1390
PaqCI CACCTGC 1 cut(s) 1343
PceI AGGCCT 2 cut(s) 1338, 1512
PciI ACATGT 2 cut(s) 1179, 1386
PctI GAATGC 1 cut(s) 866
PfeI GAWTC 1 cut(s) 506
PfoI TCCNGGA 1 cut(s) 395
PkrI GCNGC 3 cut(s) 415, 861, 1045
PleI GAGTC 2 cut(s) 125, 1198
PpsI GAGTC 2 cut(s) 125, 1198
PpuMI RGGWCCY 2 cut(s) 674, 1161
PscI ACATGT 2 cut(s) 1179, 1386
PshAI GACNNNNGTC 2 cut(s) 231, 1234
Psp5II RGGWCCY 2 cut(s) 674, 1161
PspEI GGTNACC 1 cut(s) 988
PspN4I GGNNCC 5 cut(s) 19, 377, 981, 1162, 1308
PspPI GGNCC 5 cut(s) 18, 674, 1115, 1161, 1307
PspPPI RGGWCCY 2 cut(s) 674, 1161
PsuI RGATCY 1 cut(s) 106
RsaI GTAC 4 cut(s) 798, 849, 1103, 1385
RsaNI GTAC 4 cut(s) 797, 848, 1102, 1384
SalI GTCGAC 1 cut(s) 1237
SaqAI TTAA 7 cut(s) 186, 263, 336, 842, 933, 956, 1083
SatI GCNGC 3 cut(s) 414, 860, 1044
Sau3AI GATC 5 cut(s) 106, 202, 801, 1077, 1279
Sau96I GGNCC 5 cut(s) 18, 674, 1115, 1161, 1307
SchI GAGTC 2 cut(s) 125, 1198
ScrFI CCNGG 2 cut(s) 397, 653
SduI GDGCHC 1 cut(s) 651
SfaNI GCATC 1 cut(s) 424
SfcI CTRYAG 2 cut(s) 144, 1324
SinI GGWCC 5 cut(s) 18, 674, 1115, 1161, 1307
SmiI ATTTAAAT 1 cut(s) 957
SmlI CTYRAG 3 cut(s) 644, 1070, 1206
SmoI CTYRAG 3 cut(s) 644, 1070, 1206
SseBI AGGCCT 2 cut(s) 1338, 1512
SsiI CCGC 1 cut(s) 348
SspMI CTAG 3 cut(s) 257, 1020, 1316
StuI AGGCCT 2 cut(s) 1338, 1512
StyD4I CCNGG 2 cut(s) 395, 651
StyI CCWWGG 3 cut(s) 13, 126, 1107
SwaI ATTTAAAT 1 cut(s) 957
TaaI ACNGT 4 cut(s) 309, 847, 1094, 1369
TaiI ACGT 2 cut(s) 494, 1203
TaqI TCGA 3 cut(s) 95, 836, 1238
TatI WGTACW 3 cut(s) 847, 1101, 1383
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 7 cut(s) 186, 263, 336, 842, 933, 956, 1083
Tru9I TTAA 7 cut(s) 186, 263, 336, 842, 933, 956, 1083
TscAI CASTG 2 cut(s) 826, 877
TseFI GTSAC 2 cut(s) 224, 1201
TseI GCWGC 3 cut(s) 413, 859, 1043
Tsp45I GTSAC 2 cut(s) 224, 1201
TspDTI ATGAA 4 cut(s) 398, 604, 1071, 1333
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 2 cut(s) 826, 877
VpaK11BI GGWCC 5 cut(s) 18, 674, 1115, 1161, 1307
XapI RAATTY 5 cut(s) 23, 266, 286, 958, 1293
XbaI TCTAGA 1 cut(s) 1019
XceI RCATGY 2 cut(s) 1183, 1390
XcmI CCANNNNNNNNNTGG 1 cut(s) 1105
XmiI GTMKAC 2 cut(s) 1238, 1323
XspI CTAG 3 cut(s) 257, 1020, 1316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.