Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001930

Physical Location & Seq

Genomic Coordinates Forward (+)

20930859 .. 20934320

Gene Structure 3462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00348600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2640 bp

ATGGTACCTACATATGAGAATGCAAAGACTTCAACAATTCCATGTAGCTTGACCATGGCAAACCAGAAGCATTTCCTCTGGTTCATCTTCATTGTTTTGTTCATCCCTGGGATCGAGCCTTCAATGACAAAAGAGGTGATACGAGTACCAGTAGGAGTTGTTCTTAACTTAAATTCCTCAGTGGGAGCTATGGCAGAGAACTGCATGACCATGGCACTTGATGGTTTTTATGCTAAGCATGCTCATTATCAAACAAGGCTTTTCTTTCTCACCAGGGATTCAAACAATGATGTTGTTTCAGCAGCATTTAAAGCACAGCACTTGATAAACATTGAAAATGTGAGTGCCATTATCGGACCTCAAAGTTCAGCAGAAGCAAAGTTTGTGATAGAGCTGGGAAGAAGGAATCATGTTCCCATTATTTCGTTTTCTGCCACTAGTACATCTCTTTCTCCATCTAATAGCTCATTTTTCATTCGGACGGCTTTTAGTGACTCTGCTCAAGTAGAAGCCATAGCTGCCATTGTCGGAGCTTATAGTTGGTTGGAAGTTGTTCTCATCTATGAAGACACGGAGTATGGAAATAGCTTAATTCCATATTTGGTAGATGCTTTCCAGAAAGTTGGAGCTCGAGTACCACATAGAAGTGTCATTCCTCCTCATTATAATGACAGAGAAATTTTAAAGGAGCTTAACCACTTGAAATCAACTCGAGCAAGAATTTTTTTGGTCCATATGACTGCTTTCCTCGGGTCCAAATTGTTTTTATTAGCAAATCAGGCAGGGATGATGACCGAAGGGTATGGATGGATTGTTACGGAAGGGTTATCGACTTTATTAGATCCTGTGGGTTCAACAACCATGGACTCAATGCAAGGTGTAGTGGGAGTAAGGCCATATATACCAATGTCAAAAGAACTTGAAGACTTCGTGTTGCGAATGAAAAGATTCAGGTTCAGAAAATCAAGCAACATTACTGGTGTAAACCTCTTTGGGTTGTGGGCATATGATACAGTTTGGGCATTAGCAATGGCAGTGGAGAAGGTTGGAATAGCAAGCAGAGTTGATCCTGCAAGTTTGGGAACTGGTGACAGGGGTCAGAATCTTCTCGAAGCTATCCTAGATTTAAAATTTGAAAACCTCGGTGGGAATTTCCGGTTGGTTAAGGGACAGTTGGAAGCTTCAACCTTTGAGGTATTTAATGTGATTGGAGGAAAAGAAAGAATAATTGGATATTGGAACCAAAAGAAAGGACTTTCCCGAAAGCTGAATGGAGCAGCAGAGTTGGATAAAAGGAAGACACTCGAGAAACCAATCTGGCCAGGGTACACTACAGACATCCCTCCAACAAAGAAATTGAAGATTGGAGTTCCCTTGAAACAGGGTTTTAATGAATTCCTAAAATTCGAAAACAAACACCATATATCAGGATTATCTGCTGATATATTCTTTGCTGCAAAATATGACGCTGTGGTGGGAGACACAACAATTGTGGCTAATCGCTCAATATATGTAGATTTTACGTTGCCTTACTCTGAATCAGGAGTTTCCATGATAGTTTTGACAGAAGACAGTTTTGTAATATGGGTTCTTGAGCACCGCGAAAACACAGAGTTCAGAGGTCCTCCACAGCAACAACTGGGCATGATATTCTGGTTCTCCTTTTCAACCCTCGTCTTTGCACACAGAGAGAAAGTGGTGAACAATTGGTCAAGGTTTGTGCTGATTATATGGGTTTTTGTGGTGCTGATCCTAACACAGAGTTACACTGCAAGCTTAGCCTCAATGTTAACAGTACAGAAGTTGCAGCCTGCATTCACTGATATAAAAGAGATACAAAGAAATGGTTACAAAGTAGGATATCAAAATAGTTCCTTTATTAAAGGGTTTCTCATAGAACATTTAAATTTTGATGAGACCAAGCTGGTGCCATTGGAAACCATTTCGGATTATCATAACGCACTGTCTAGAGGAAACAAGAATGGAGTTGCTGCCATTTTAGATGAAGTACCTTACCTCAAGTTGTTTCTTAAAGCGAAATGTTCCAAGTACACCATGGTTGGACCAACCTACAAAACTGATGGATTTGGCTTTGCCTTCCCAATAGGATCCCCGCTGGTATCCTACATGTCGAGGGCAATCTTGAACGTGACTCAAGATAAAAATACTTACTTTGATTACTTTGATAACAAACCAGCCTGTGAGGATCAAAGTGCCAAAATTTCTTCCGAGGGTCCAAGTCTTGGTGTCTACAGCTTCGGAGGCCTCTTCATCATCGCAGGTGTGGCCTCCATGGTTGCTCTTTTGATGTACATGTATCACTTCCTTTGCTCTCATTGGCCAGCTTTGCGAACCATTTGTTCTTCTGAGAGCACATTTTGGGAGAAATTGGTTGAAGTGGCAAAGCATTTTGACAAGAAAGATCTCACTTCACATCAGTTTAAGCGAAGAGAATCAAGAGTACATGCTTTAGACACTCCTGATGAAGGTCTAGCAGCTGCACCTGGTGCTAATGATATGCAAAACAACTCAGCAGGAACTCACATAACAGTGGAAAACAATCTTGGACATGATGAAAATGAAAATCTTTCATCAAGGCATACGGATTCATCTATGCCTGTACTCGACTCATCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

879

Amino Acids

98.16

Weight (kDa)

7.11

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	59 - 385	7.7e-22	Periplasmic binding protein
ANF_receptor	PF01094	66 - 404	1.9e-75	Receptor family ligand binding region
Lig_chan	PF00060	519 - 763	8.8e-32	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06680 FvH4_3g38721 FvH4_4g08410 FvH4_6g06360
prunus_persica	Prupe.1G094600_v2.0.a1 Prupe.1G094700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0403951 RchiOBHm_Chr4g0403991 RchiOBHm_Chr4g0404001 RchiOBHm_Chr4g0404021 RchiOBHm_Chr4g0404081
rosa_laevigata	RLG00000008927 RLG00000008928 RLG00000008929 RLG00000008931 RLG00000008934 RLG00000008935 RLG00000008938 RLG00000008939 RLG00000019466 RLG00000027985 RLG00000032399
rosa_multiflora	Rmu_co8070616.1_g000001 Rmu_co8395539.1_g000001 Rmu_sc0003478.1_g000001 Rmu_sc0003483.1_g000003 Rmu_sc0004781.1_g000004 Rmu_sc0005134.1_g000003 Rmu_sc0006579.1_g000019 Rmu_sc0026037.1_g000003
rosa_roxburghii	Rroxscaffold_5G00348550 Rroxscaffold_5G00348600
rosa_rugosa	Rorug04G0046400 Rorug04G0046700 Rorug04G0046700
rosa_samantha	Rh4BG115300 Rh4BG115500 Rh4CG130700 Rh4CG130800 Rh4DG115400 Rh4DG115700
rosa_wichuraiana	Rw4G009780 Rw4G009790 Rw4G009800 Rw4G009930 Rw4G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	666
AarI	CACCTGC	1 cut(s)	2270
Acc36I	ACCTGC	1 cut(s)	2270
Acc65I	GGTACC	1 cut(s)	4
AccB1I	GGYRCC	2 cut(s)	4, 1927
AccB7I	CCANNNNNTGG	1 cut(s)	2243
AccI	GTMKAC	1 cut(s)	2250
AccII	CGCG	1 cut(s)	1602
AciI	CCGC	2 cut(s)	1600, 2114
AclWI	GGATC	7 cut(s)	119, 836, 1061, 1744, 2103, 2116, 2214
AcoI	YGGCCR	2 cut(s)	1319, 2339
AcsI	RAATTY	9 cut(s)	172, 678, 720, 1130, 1150, 1394, 1403, 1906, 2220
AdeI	CACNNNGTG	1 cut(s)	2507
AfiI	CCNNNNNNNGG	2 cut(s)	2243, 2486
AflIII	ACRYGT	2 cut(s)	2127, 2313
AhlI	ACTAGT	1 cut(s)	437
AjnI	CCWGG	4 cut(s)	106, 272, 1321, 2503
AjuI	GAANNNNNNNTTGG	6 cut(s)	1142, 1174, 1212, 1244, 2547, 2579
Alw21I	GWGCWC	3 cut(s)	631, 1599, 2375
Alw26I	GTCTC	2 cut(s)	1473, 1910
AlwI	GGATC	7 cut(s)	119, 836, 1061, 1744, 2103, 2116, 2214
Ama87I	CYCGRG	4 cut(s)	630, 711, 749, 1304
AoxI	GGCC	5 cut(s)	893, 1319, 2263, 2286, 2339
ApeKI	GCWGC	8 cut(s)	302, 518, 1277, 1454, 1807, 1991, 2495, 2498
ApoI	RAATTY	9 cut(s)	172, 678, 720, 1130, 1150, 1394, 1403, 1906, 2220
Asp700I	GAANNNNTTC	3 cut(s)	71, 552, 947
Asp718I	GGTACC	1 cut(s)	4
AspS9I	GGNCC	6 cut(s)	356, 730, 753, 1622, 2063, 2234
AsuHPI	GGTGA	4 cut(s)	148, 262, 1100, 1711
AsuII	TTCGAA	1 cut(s)	1407
AvaI	CYCGRG	4 cut(s)	630, 711, 749, 1304
AvaII	GGWCC	6 cut(s)	356, 730, 753, 1622, 2063, 2234
BalI	TGGCCA	2 cut(s)	1321, 2341
BamHI	GGATCC	1 cut(s)	2108
BanI	GGYRCC	2 cut(s)	4, 1927
BanII	GRGCYC	1 cut(s)	631
BbsI	GAAGAC	4 cut(s)	573, 930, 1304, 1575
Bbv12I	GWGCWC	3 cut(s)	631, 1599, 2375
BbvI	GCAGC	8 cut(s)	314, 505, 1289, 1441, 1819, 1978, 2485, 2507
BccI	CCATC	4 cut(s)	215, 463, 801, 2075
BceAI	ACGGC	1 cut(s)	498
BciT130I	CCWGG	4 cut(s)	108, 274, 1323, 2505
BciVI	GTATCC	1 cut(s)	2131
BcoDI	GTCTC	2 cut(s)	1473, 1910
BcuI	ACTAGT	1 cut(s)	437
BfaI	CTAG	4 cut(s)	438, 1121, 1968, 2492
BfmI	CTRYAG	2 cut(s)	1332, 2251
BfuAI	ACCTGC	1 cut(s)	2270
BfuI	GTATCC	1 cut(s)	2131
BglII	AGATCT	1 cut(s)	2422
BisI	GCNGC	8 cut(s)	303, 519, 1278, 1455, 1808, 1992, 2496, 2499
BlpI	GCTNAGC	2 cut(s)	234, 1777
BlsI	GCNGC	8 cut(s)	304, 520, 1279, 1456, 1809, 1993, 2497, 2500
Bme1390I	CCNGG	4 cut(s)	108, 274, 1323, 2505
Bme18I	GGWCC	6 cut(s)	356, 730, 753, 1622, 2063, 2234
BmeT110I	CYCGRG	4 cut(s)	630, 711, 749, 1304
BmgT120I	GGNCC	6 cut(s)	356, 730, 753, 1622, 2063, 2234
BmiI	GGNNCC	6 cut(s)	6, 754, 1241, 1929, 2110, 2235
BmrFI	CCNGG	4 cut(s)	108, 274, 1323, 2505
BmrI	ACTGGG	1 cut(s)	1649
BmsI	GCATC	1 cut(s)	598
BmuI	ACTGGG	1 cut(s)	1649
BoxI	GACNNNNGTC	1 cut(s)	1095
BpiI	GAAGAC	4 cut(s)	573, 930, 1304, 1575
Bpu1102I	GCTNAGC	2 cut(s)	234, 1777
Bpu14I	TTCGAA	1 cut(s)	1407
BpuEI	CTTGAG	4 cut(s)	486, 1613, 2003, 2139
BsaI	GGTCTC	1 cut(s)	1910
BsaWI	WCCGGW	1 cut(s)	1155
BsaXI	ACNNNNNCTCC	2 cut(s)	618, 648
Bsc4I	CCNNNNNNNGG	2 cut(s)	2243, 2486
Bse1I	ACTGG	4 cut(s)	149, 982, 1090, 1644
Bse3DI	GCAATG	1 cut(s)	1035
BseBI	CCWGG	4 cut(s)	108, 274, 1323, 2505
BseGI	GGATG	4 cut(s)	102, 792, 812, 1338
BseLI	CCNNNNNNNGG	2 cut(s)	2243, 2486
BseMI	GCAATG	1 cut(s)	1035
BseMII	CTCAG	3 cut(s)	192, 2358, 2544
BseNI	ACTGG	4 cut(s)	149, 982, 1090, 1644
BseRI	GAGGAG	1 cut(s)	648
BseXI	GCAGC	8 cut(s)	314, 505, 1289, 1441, 1819, 1978, 2485, 2507
BseYI	CCCAGC	1 cut(s)	394
BsgI	GTGCAG	1 cut(s)	2484
Bsh1236I	CGCG	1 cut(s)	1602
BshFI	GGCC	5 cut(s)	895, 1321, 2265, 2288, 2341
BshNI	GGYRCC	2 cut(s)	4, 1927
BsiHKAI	GWGCWC	3 cut(s)	631, 1599, 2375
BsiHKCI	CYCGRG	4 cut(s)	630, 711, 749, 1304
BsiSI	CCGG	1 cut(s)	1156
BslFI	GGGAC	1 cut(s)	1182
BslI	CCNNNNNNNGG	2 cut(s)	2243, 2486
BsmAI	GTCTC	2 cut(s)	1473, 1910
BsmFI	GGGAC	1 cut(s)	1182
BsmI	GAATGC	2 cut(s)	25, 1814
BsnI	GGCC	5 cut(s)	895, 1321, 2265, 2288, 2341
Bso31I	GGTCTC	1 cut(s)	1910
BsoBI	CYCGRG	4 cut(s)	630, 711, 749, 1304
Bsp119I	TTCGAA	1 cut(s)	1407
Bsp1286I	GDGCHC	3 cut(s)	631, 1599, 2375
Bsp1407I	TGTACA	1 cut(s)	2310
Bsp143I	GATC	7 cut(s)	111, 841, 1066, 1749, 2108, 2206, 2422
Bsp1720I	GCTNAGC	2 cut(s)	234, 1777
Bsp19I	CCATGG	5 cut(s)	54, 210, 861, 2055, 2292
BspACI	CCGC	2 cut(s)	1600, 2114
BspANI	GGCC	5 cut(s)	895, 1321, 2265, 2288, 2341
BspCNI	CTCAG	3 cut(s)	191, 2359, 2543
BspFNI	CGCG	1 cut(s)	1602
BspLI	GGNNCC	6 cut(s)	6, 754, 1241, 1929, 2110, 2235
BspMI	ACCTGC	1 cut(s)	2270
BspPI	GGATC	7 cut(s)	119, 836, 1061, 1744, 2103, 2116, 2214
BspT104I	TTCGAA	1 cut(s)	1407
BspT107I	GGYRCC	2 cut(s)	4, 1927
BspTNI	GGTCTC	1 cut(s)	1910
BsrDI	GCAATG	1 cut(s)	1035
BsrGI	TGTACA	1 cut(s)	2310
BsrI	ACTGG	4 cut(s)	149, 982, 1090, 1644
BssMI	GATC	7 cut(s)	111, 841, 1066, 1749, 2108, 2206, 2422
BssT1I	CCWWGG	5 cut(s)	54, 210, 861, 2055, 2292
Bst2UI	CCWGG	4 cut(s)	108, 274, 1323, 2505
Bst4CI	ACNGT	6 cut(s)	1015, 1173, 1574, 1795, 1965, 2551
Bst6I	CTCTTC	2 cut(s)	2273, 2443
BstAPI	GCANNNNNTGC	1 cut(s)	2507
BstAUI	TGTACA	1 cut(s)	2310
BstBI	TTCGAA	1 cut(s)	1407
BstC8I	GCNNGC	5 cut(s)	240, 1057, 1774, 1812, 2343
BstDEI	CTNAG	5 cut(s)	178, 234, 1777, 2367, 2530
BstDSI	CCRYGG	5 cut(s)	54, 210, 861, 2055, 2292
BstENI	CCTNNNNNAGG	1 cut(s)	2484
BstF5I	GGATG	4 cut(s)	102, 792, 812, 1338
BstFNI	CGCG	1 cut(s)	1602
BstKTI	GATC	7 cut(s)	114, 844, 1069, 1752, 2111, 2209, 2425
BstMAI	GTCTC	2 cut(s)	1473, 1910
BstMBI	GATC	7 cut(s)	111, 841, 1066, 1749, 2108, 2206, 2422
BstMWI	GCNNNNNNNGC	9 cut(s)	239, 311, 518, 779, 1778, 2262, 2285, 2347, 2507
BstNI	CCWGG	4 cut(s)	108, 274, 1323, 2505
BstNSI	RCATGY	4 cut(s)	242, 2131, 2317, 2468
BstPAI	GACNNNNGTC	1 cut(s)	1095
BstSCI	CCNGG	4 cut(s)	106, 272, 1321, 2503
BstSFI	CTRYAG	2 cut(s)	1332, 2251
BstUI	CGCG	1 cut(s)	1602
BstV1I	GCAGC	8 cut(s)	314, 505, 1289, 1441, 1819, 1978, 2485, 2507
BstV2I	GAAGAC	4 cut(s)	573, 930, 1304, 1575
BstX2I	RGATCY	3 cut(s)	841, 2108, 2422
BstXI	CCANNNNNNTGG	1 cut(s)	623
BstYI	RGATCY	3 cut(s)	841, 2108, 2422
BsuI	GTATCC	1 cut(s)	2131
BsuRI	GGCC	5 cut(s)	895, 1321, 2265, 2288, 2341
BtgI	CCRYGG	5 cut(s)	54, 210, 861, 2055, 2292
BtgZI	GCGATG	1 cut(s)	2260
BtsCI	GGATG	4 cut(s)	102, 792, 812, 1338
BtsI	GCAGTG	2 cut(s)	1041, 1767
BtsIMutI	CAGTG	6 cut(s)	186, 1041, 1767, 1818, 1961, 2556
BveI	ACCTGC	1 cut(s)	2270
Cac8I	GCNNGC	5 cut(s)	240, 1057, 1774, 1812, 2343
Cfr13I	GGNCC	6 cut(s)	356, 730, 753, 1622, 2063, 2234
CseI	GACGC	1 cut(s)	1475
CsiI	ACCWGGT	1 cut(s)	2503
CspCI	CAANNNNNGTGG	4 cut(s)	1017, 1052, 1473, 1508
DdeI	CTNAG	5 cut(s)	178, 234, 1777, 2367, 2530
DpnI	GATC	7 cut(s)	113, 843, 1068, 1751, 2110, 2208, 2424
DpnII	GATC	7 cut(s)	111, 841, 1066, 1749, 2108, 2206, 2422
DraI	TTTAAA	4 cut(s)	310, 684, 1128, 1905
DraIII	CACNNNGTG	1 cut(s)	2507
EaeI	YGGCCR	2 cut(s)	1319, 2339
Eam1104I	CTCTTC	2 cut(s)	2273, 2443
EarI	CTCTTC	2 cut(s)	2273, 2443
Ecl136II	GAGCTC	1 cut(s)	629
Eco130I	CCWWGG	5 cut(s)	54, 210, 861, 2055, 2292
Eco147I	AGGCCT	1 cut(s)	2265
Eco24I	GRGCYC	1 cut(s)	631
Eco31I	GGTCTC	1 cut(s)	1910
Eco32I	GATATC	1 cut(s)	1862
Eco47I	GGWCC	6 cut(s)	356, 730, 753, 1622, 2063, 2234
Eco53kI	GAGCTC	1 cut(s)	629
Eco88I	CYCGRG	4 cut(s)	630, 711, 749, 1304
EcoICRI	GAGCTC	1 cut(s)	629
EcoNI	CCTNNNNNAGG	1 cut(s)	2484
EcoO109I	RGGNCCY	1 cut(s)	1622
EcoRI	GAATTC	1 cut(s)	1394
EcoRII	CCWGG	4 cut(s)	106, 272, 1321, 2503
EcoRV	GATATC	1 cut(s)	1862
EcoT14I	CCWWGG	5 cut(s)	54, 210, 861, 2055, 2292
EcoT38I	GRGCYC	1 cut(s)	631
ErhI	CCWWGG	5 cut(s)	54, 210, 861, 2055, 2292
FaqI	GGGAC	1 cut(s)	1182
FauI	CCCGC	1 cut(s)	2121
FauNDI	CATATG	3 cut(s)	13, 735, 1006
FblI	GTMKAC	1 cut(s)	2250
Fnu4HI	GCNGC	8 cut(s)	303, 519, 1278, 1455, 1808, 1992, 2496, 2499
FokI	GGATG	4 cut(s)	89, 799, 819, 1325
FriOI	GRGCYC	1 cut(s)	631
Fsp4HI	GCNGC	8 cut(s)	303, 519, 1278, 1455, 1808, 1992, 2496, 2499
FspBI	CTAG	4 cut(s)	438, 1121, 1968, 2492
GluI	GCNGC	8 cut(s)	303, 519, 1278, 1455, 1808, 1992, 2496, 2499
GsaI	CCCAGC	1 cut(s)	398
HaeIII	GGCC	5 cut(s)	895, 1321, 2265, 2288, 2341
HapII	CCGG	1 cut(s)	1156
HgaI	GACGC	1 cut(s)	1475
HincII	GTYRAC	1 cut(s)	1791
HindII	GTYRAC	1 cut(s)	1791
HindIII	AAGCTT	2 cut(s)	1179, 1774
HpaI	GTTAAC	1 cut(s)	1791
HpaII	CCGG	1 cut(s)	1156
HphI	GGTGA	4 cut(s)	148, 262, 1100, 1711
Hpy166II	GTNNAC	6 cut(s)	985, 1329, 1702, 1791, 2052, 2251
Hpy8I	GTNNAC	6 cut(s)	985, 1329, 1702, 1791, 2052, 2251
HpyAV	CCTTC	7 cut(s)	129, 396, 791, 815, 1036, 2107, 2480
HpyCH4III	ACNGT	6 cut(s)	1015, 1173, 1574, 1795, 1965, 2551
HpyCH4IV	ACGT	2 cut(s)	1523, 2148
HpyF10VI	GCNNNNNNNGC	9 cut(s)	239, 311, 518, 779, 1778, 2262, 2285, 2347, 2507
HpyF3I	CTNAG	5 cut(s)	178, 234, 1777, 2367, 2530
HpySE526I	ACGT	2 cut(s)	1523, 2148
KpnI	GGTACC	1 cut(s)	8
KspAI	GTTAAC	1 cut(s)	1791
Kzo9I	GATC	7 cut(s)	111, 841, 1066, 1749, 2108, 2206, 2422
LmnI	GCTCC	5 cut(s)	185, 530, 626, 688, 1274
Lsp1109I	GCAGC	8 cut(s)	314, 505, 1289, 1441, 1819, 1978, 2485, 2507
LweI	GCATC	1 cut(s)	598
MabI	ACCWGGT	1 cut(s)	2503
MaeI	CTAG	4 cut(s)	438, 1121, 1968, 2492
MaeII	ACGT	2 cut(s)	1523, 2148
MaeIII	GTNAC	6 cut(s)	491, 814, 1088, 1763, 1847, 2149
MalI	GATC	7 cut(s)	113, 843, 1068, 1751, 2110, 2208, 2424
MboI	GATC	7 cut(s)	111, 841, 1066, 1749, 2108, 2206, 2422
MfeI	CAATTG	2 cut(s)	1488, 1705
MflI	RGATCY	3 cut(s)	841, 2108, 2422
MhlI	GDGCHC	3 cut(s)	631, 1599, 2375
MlsI	TGGCCA	2 cut(s)	1321, 2341
MluNI	TGGCCA	2 cut(s)	1321, 2341
MlyI	GAGTC	4 cut(s)	488, 860, 2146, 2621
MmeI	TCCRAC	8 cut(s)	508, 525, 604, 1027, 1155, 1266, 1370, 2041
Mox20I	TGGCCA	2 cut(s)	1321, 2341
MroXI	GAANNNNTTC	3 cut(s)	71, 552, 947
MscI	TGGCCA	2 cut(s)	1321, 2341
MslI	CAYNNNNRTG	4 cut(s)	209, 645, 666, 2549
Msp20I	TGGCCA	2 cut(s)	1321, 2341
MspA1I	CMGCKG	2 cut(s)	2116, 2498
MspI	CCGG	1 cut(s)	1156
MspR9I	CCNGG	4 cut(s)	108, 274, 1323, 2505
MunI	CAATTG	2 cut(s)	1488, 1705
Mva1269I	GAATGC	2 cut(s)	25, 1814
MvaI	CCWGG	4 cut(s)	108, 274, 1323, 2505
MvnI	CGCG	1 cut(s)	1602
MwoI	GCNNNNNNNGC	9 cut(s)	239, 311, 518, 779, 1778, 2262, 2285, 2347, 2507
NcoI	CCATGG	5 cut(s)	54, 210, 861, 2055, 2292
NdeI	CATATG	3 cut(s)	13, 735, 1006
NdeII	GATC	7 cut(s)	111, 841, 1066, 1749, 2108, 2206, 2422
NlaIV	GGNNCC	6 cut(s)	6, 754, 1241, 1929, 2110, 2235
NmuCI	GTSAC	3 cut(s)	491, 1088, 2149
NspI	RCATGY	4 cut(s)	242, 2131, 2317, 2468
NspV	TTCGAA	1 cut(s)	1407
PaeI	GCATGC	1 cut(s)	242
PaeR7I	CTCGAG	3 cut(s)	630, 711, 1304
PaqCI	CACCTGC	1 cut(s)	2270
PasI	CCCWGGG	1 cut(s)	107
PceI	AGGCCT	1 cut(s)	2265
PciI	ACATGT	2 cut(s)	2127, 2313
PctI	GAATGC	2 cut(s)	25, 1814
PdmI	GAANNNNTTC	3 cut(s)	71, 552, 947
PfeI	GAWTC	7 cut(s)	278, 406, 948, 1102, 1538, 2453, 2606
PflMI	CCANNNNNTGG	1 cut(s)	2243
PkrI	GCNGC	8 cut(s)	304, 520, 1279, 1456, 1809, 1993, 2497, 2500
PleI	GAGTC	4 cut(s)	488, 860, 2146, 2621
PpsI	GAGTC	4 cut(s)	488, 860, 2146, 2621
PpuMI	RGGWCCY	1 cut(s)	1622
PscI	ACATGT	2 cut(s)	2127, 2313
PshAI	GACNNNNGTC	1 cut(s)	1095
PsiI	TTATAA	1 cut(s)	666
Psp124BI	GAGCTC	1 cut(s)	631
Psp5II	RGGWCCY	1 cut(s)	1622
Psp6I	CCWGG	4 cut(s)	106, 272, 1321, 2503
PspFI	CCCAGC	1 cut(s)	394
PspGI	CCWGG	4 cut(s)	106, 272, 1321, 2503
PspN4I	GGNNCC	6 cut(s)	6, 754, 1241, 1929, 2110, 2235
PspPI	GGNCC	6 cut(s)	356, 730, 753, 1622, 2063, 2234
PspPPI	RGGWCCY	1 cut(s)	1622
PspXI	VCTCGAGB	2 cut(s)	630, 711
PsrI	GAACNNNNNNTAC	4 cut(s)	144, 176, 1572, 1604
PsuI	RGATCY	3 cut(s)	841, 2108, 2422
PvuII	CAGCTG	1 cut(s)	2498
RseI	CAYNNNNRTG	4 cut(s)	209, 645, 666, 2549
SacI	GAGCTC	1 cut(s)	631
SatI	GCNGC	8 cut(s)	303, 519, 1278, 1455, 1808, 1992, 2496, 2499
Sau3AI	GATC	7 cut(s)	111, 841, 1066, 1749, 2108, 2206, 2422
Sau96I	GGNCC	6 cut(s)	356, 730, 753, 1622, 2063, 2234
SchI	GAGTC	4 cut(s)	488, 860, 2146, 2621
ScrFI	CCNGG	4 cut(s)	108, 274, 1323, 2505
SduI	GDGCHC	3 cut(s)	631, 1599, 2375
SexAI	ACCWGGT	1 cut(s)	2503
SfaNI	GCATC	1 cut(s)	598
SfcI	CTRYAG	2 cut(s)	1332, 2251
Sfr274I	CTCGAG	3 cut(s)	630, 711, 1304
SfuI	TTCGAA	1 cut(s)	1407
SinI	GGWCC	6 cut(s)	356, 730, 753, 1622, 2063, 2234
SlaI	CTCGAG	3 cut(s)	630, 711, 1304
SmiI	ATTTAAAT	1 cut(s)	1905
SmiMI	CAYNNNNRTG	4 cut(s)	209, 645, 666, 2549
SmlI	CTYRAG	7 cut(s)	501, 630, 711, 1304, 1592, 2018, 2154
SmoI	CTYRAG	7 cut(s)	501, 630, 711, 1304, 1592, 2018, 2154
SpeI	ACTAGT	1 cut(s)	437
SphI	GCATGC	1 cut(s)	242
SseBI	AGGCCT	1 cut(s)	2265
SsiI	CCGC	2 cut(s)	1600, 2114
SspMI	CTAG	4 cut(s)	438, 1121, 1968, 2492
SstI	GAGCTC	1 cut(s)	631
StuI	AGGCCT	1 cut(s)	2265
StyD4I	CCNGG	4 cut(s)	106, 272, 1321, 2503
StyI	CCWWGG	5 cut(s)	54, 210, 861, 2055, 2292
SwaI	ATTTAAAT	1 cut(s)	1905
TaaI	ACNGT	6 cut(s)	1015, 1173, 1574, 1795, 1965, 2551
TaiI	ACGT	2 cut(s)	1526, 2151
TaqI	TCGA	9 cut(s)	114, 631, 712, 830, 1110, 1305, 1407, 2132, 2625
TaqII	GACCGA	1 cut(s)	809
TatI	WGTACW	6 cut(s)	440, 1795, 2049, 2310, 2461, 2620
TfiI	GAWTC	7 cut(s)	278, 406, 948, 1102, 1538, 2453, 2606
TscAI	CASTG	6 cut(s)	186, 1041, 1774, 1825, 1968, 2556
TseFI	GTSAC	3 cut(s)	491, 1088, 2149
TseI	GCWGC	8 cut(s)	302, 518, 1277, 1454, 1807, 1991, 2495, 2498
Tsp45I	GTSAC	3 cut(s)	491, 1088, 2149
TspGWI	ACGGA	3 cut(s)	587, 833, 2618
TspRI	CASTG	6 cut(s)	186, 1041, 1774, 1825, 1968, 2556
Van91I	CCANNNNNTGG	1 cut(s)	2243
VpaK11BI	GGWCC	6 cut(s)	356, 730, 753, 1622, 2063, 2234
XagI	CCTNNNNNAGG	1 cut(s)	2484
XapI	RAATTY	9 cut(s)	172, 678, 720, 1130, 1150, 1394, 1403, 1906, 2220
XbaI	TCTAGA	1 cut(s)	1967
XceI	RCATGY	4 cut(s)	242, 2131, 2317, 2468
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2053
XhoI	CTCGAG	3 cut(s)	630, 711, 1304
XmiI	GTMKAC	1 cut(s)	2250
XmnI	GAANNNNTTC	3 cut(s)	71, 552, 947
XspI	CTAG	4 cut(s)	438, 1121, 1968, 2492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.