Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001930

Physical Location & Seq

Genomic Coordinates Reverse (-)

42968522 .. 42969474

Gene Structure 953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008931

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTTAACAGTACAGAAGTTGCAGCCTGCATTCACTGATATAAAAGAGATACAAAGAAATGGTTACAAAGTAGGATATCAAAATAGTTCCTTTATTAAAGGGTTTCTCATGGAACATTTAAATTTTGATGAGACCAAGTTGGAGCCATTGGAAACCATTCCAGATTATCATAACGCACTGTCTAGAGGAAACAAGAATCGAGTTGCTGCCATTTTAGATGAAGTCCCTTACCTCAAGTTGTATCTTAAAACGAACTGTTCCAAGTACACCATGGTTGGACCAACCTACAAAACTGATGGACTTGGCTTTGCCTTCCCAATAGGGTCCCCGCTGGTATCCAACATGTCGAGGGCAATCTTGAACGTGACTCAAAATAAAAATCATATGGATAGAATTCAGTCGACTTACTTTGATTACTTTGATAACAAACCTGCCTGTGAGGATCAAAGTGCCCAAATTTCTTCAGAGGGTCCAAGTCTGCGTGTCTACAGCTTCGGAGGCCTCTTCATCATCGCAGGTGTGGCCTCCGTGGTTGCTCTTAATTTTGATTGGCAACGCATTTTGACAAGAAAGATCTCACTTCACATCAGTTTAAGCGAAGAGAATCAAGAGTACATGCTTTACACTCCTGATGAAGGTCTAGCAGCTGCACCTGGTGCTAATGATATGCAAAACAACTCAGCAGGAACTCACATAACAGTGGAAAACAATCTTGGACATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

242

Amino Acids

27.0

Weight (kDa)

5.7

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06680 FvH4_3g38721 FvH4_4g08410 FvH4_6g06360
prunus_persica	Prupe.1G094600_v2.0.a1 Prupe.1G094700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0403951 RchiOBHm_Chr4g0403991 RchiOBHm_Chr4g0404001 RchiOBHm_Chr4g0404021 RchiOBHm_Chr4g0404081
rosa_laevigata	RLG00000008927 RLG00000008928 RLG00000008929 RLG00000008931 RLG00000008934 RLG00000008935 RLG00000008938 RLG00000008939 RLG00000019466 RLG00000027985 RLG00000032399
rosa_multiflora	Rmu_co8070616.1_g000001 Rmu_co8395539.1_g000001 Rmu_sc0003478.1_g000001 Rmu_sc0003483.1_g000003 Rmu_sc0004781.1_g000004 Rmu_sc0005134.1_g000003 Rmu_sc0006579.1_g000019 Rmu_sc0026037.1_g000003
rosa_roxburghii	Rroxscaffold_5G00348550 Rroxscaffold_5G00348600
rosa_rugosa	Rorug04G0046400 Rorug04G0046700 Rorug04G0046700
rosa_samantha	Rh4BG115300 Rh4BG115500 Rh4CG130700 Rh4CG130800 Rh4DG115400 Rh4DG115700
rosa_wichuraiana	Rw4G009780 Rw4G009790 Rw4G009800 Rw4G009930 Rw4G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	506
Acc36I	ACCTGC	2 cut(s)	439, 506
AccI	GTMKAC	2 cut(s)	401, 486
AciI	CCGC	1 cut(s)	329
AclWI	GGATC	1 cut(s)	450
AcsI	RAATTY	3 cut(s)	121, 393, 456
AcuI	CTGAAG	1 cut(s)	447
AdeI	CACNNNGTG	1 cut(s)	656
AfaI	GTAC	3 cut(s)	12, 266, 614
AfiI	CCNNNNNNNGG	1 cut(s)	635
AflIII	ACRYGT	1 cut(s)	342
AgsI	TTSAA	1 cut(s)	361
AjnI	CCWGG	1 cut(s)	652
AjuI	GAANNNNNNNTTGG	1 cut(s)	696
AluBI	AGCT	2 cut(s)	492, 647
AluI	AGCT	2 cut(s)	492, 647
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	1 cut(s)	450
AoxI	GGCC	2 cut(s)	499, 522
ApeKI	GCWGC	4 cut(s)	22, 206, 644, 647
ApoI	RAATTY	3 cut(s)	121, 393, 456
Asp700I	GAANNNNTTC	1 cut(s)	156
AspS9I	GGNCC	3 cut(s)	278, 324, 470
AvaII	GGWCC	3 cut(s)	278, 324, 470
BaeGI	GKGCMC	1 cut(s)	454
BbvI	GCAGC	4 cut(s)	34, 193, 634, 656
BccI	CCATC	1 cut(s)	290
BciT130I	CCWGG	1 cut(s)	654
BciVI	GTATCC	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	2 cut(s)	183, 641
BfmI	CTRYAG	1 cut(s)	487
BfuAI	ACCTGC	2 cut(s)	439, 506
BfuI	GTATCC	1 cut(s)	346
BglII	AGATCT	1 cut(s)	573
BisI	GCNGC	4 cut(s)	23, 207, 645, 648
BlsI	GCNGC	4 cut(s)	24, 208, 646, 649
Bme1390I	CCNGG	1 cut(s)	654
Bme18I	GGWCC	3 cut(s)	278, 324, 470
BmgT120I	GGNCC	3 cut(s)	278, 324, 470
BmiI	GGNNCC	4 cut(s)	144, 325, 326, 471
BmrFI	CCNGG	1 cut(s)	654
BpuEI	CTTGAG	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	270, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
BseBI	CCWGG	1 cut(s)	654
BseDI	CCNNGG	2 cut(s)	270, 528
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMII	CTCAG	1 cut(s)	693
BseSI	GKGCMC	1 cut(s)	454
BseXI	GCAGC	4 cut(s)	34, 193, 634, 656
BsgI	GTGCAG	1 cut(s)	633
BshFI	GGCC	2 cut(s)	501, 524
BslFI	GGGAC	2 cut(s)	209, 310
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	2 cut(s)	209, 310
BsmI	GAATGC	1 cut(s)	29
BsnI	GGCC	2 cut(s)	501, 524
Bso31I	GGTCTC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp143I	GATC	2 cut(s)	442, 573
Bsp19I	CCATGG	1 cut(s)	270
BspACI	CCGC	1 cut(s)	329
BspANI	GGCC	2 cut(s)	501, 524
BspCNI	CTCAG	1 cut(s)	692
BspLI	GGNNCC	4 cut(s)	144, 325, 326, 471
BspMI	ACCTGC	2 cut(s)	439, 506
BspPI	GGATC	1 cut(s)	450
BspTNI	GGTCTC	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	270, 528
BssMI	GATC	2 cut(s)	442, 573
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	654
Bst4CI	ACNGT	4 cut(s)	10, 180, 257, 700
Bst6I	CTCTTC	2 cut(s)	509, 594
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	1 cut(s)	679
BstDSI	CCRYGG	2 cut(s)	270, 528
BstENI	CCTNNNNNAGG	1 cut(s)	633
BstKTI	GATC	2 cut(s)	445, 576
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	2 cut(s)	442, 573
BstMWI	GCNNNNNNNGC	3 cut(s)	498, 521, 656
BstNI	CCWGG	1 cut(s)	654
BstNSI	RCATGY	2 cut(s)	346, 619
BstSCI	CCNGG	1 cut(s)	652
BstSFI	CTRYAG	1 cut(s)	487
BstSLI	GKGCMC	1 cut(s)	454
BstV1I	GCAGC	4 cut(s)	34, 193, 634, 656
BstX2I	RGATCY	1 cut(s)	573
BstYI	RGATCY	1 cut(s)	573
BsuI	GTATCC	1 cut(s)	346
BsuRI	GGCC	2 cut(s)	501, 524
BtgI	CCRYGG	2 cut(s)	270, 528
BtgZI	GCGATG	1 cut(s)	496
BtsIMutI	CAGTG	3 cut(s)	33, 176, 705
BveI	ACCTGC	2 cut(s)	439, 506
Cac8I	GCNNGC	1 cut(s)	27
Cfr13I	GGNCC	3 cut(s)	278, 324, 470
CsiI	ACCWGGT	1 cut(s)	652
Csp6I	GTAC	3 cut(s)	11, 265, 613
CviAII	CATG	5 cut(s)	109, 271, 343, 616, 719
CviJI	RGCY	7 cut(s)	25, 145, 306, 492, 501, 524, 647
CviKI_1	RGCY	7 cut(s)	25, 145, 306, 492, 501, 524, 647
CviQI	GTAC	3 cut(s)	11, 265, 613
DdeI	CTNAG	1 cut(s)	679
DpnI	GATC	2 cut(s)	444, 575
DpnII	GATC	2 cut(s)	442, 573
DraI	TTTAAA	1 cut(s)	120
DraIII	CACNNNGTG	1 cut(s)	656
Eam1104I	CTCTTC	2 cut(s)	509, 594
EarI	CTCTTC	2 cut(s)	509, 594
Eco130I	CCWWGG	1 cut(s)	270
Eco147I	AGGCCT	1 cut(s)	501
Eco31I	GGTCTC	1 cut(s)	125
Eco32I	GATATC	1 cut(s)	77
Eco47I	GGWCC	3 cut(s)	278, 324, 470
Eco57I	CTGAAG	1 cut(s)	447
EcoNI	CCTNNNNNAGG	1 cut(s)	633
EcoO109I	RGGNCCY	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	652
EcoRV	GATATC	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	5 cut(s)	112, 274, 346, 619, 722
FaqI	GGGAC	2 cut(s)	209, 310
FatI	CATG	5 cut(s)	108, 270, 342, 615, 718
FauI	CCCGC	1 cut(s)	336
FauNDI	CATATG	1 cut(s)	384
FblI	GTMKAC	2 cut(s)	401, 486
Fnu4HI	GCNGC	4 cut(s)	23, 207, 645, 648
Fsp4HI	GCNGC	4 cut(s)	23, 207, 645, 648
FspBI	CTAG	2 cut(s)	183, 641
GluI	GCNGC	4 cut(s)	23, 207, 645, 648
HaeIII	GGCC	2 cut(s)	501, 524
Hin1II	CATG	5 cut(s)	112, 274, 346, 619, 722
HincII	GTYRAC	2 cut(s)	6, 402
HindII	GTYRAC	2 cut(s)	6, 402
HinfI	GANTC	3 cut(s)	196, 367, 604
HpaI	GTTAAC	1 cut(s)	6
Hpy166II	GTNNAC	4 cut(s)	6, 267, 402, 487
Hpy188I	TCNGA	2 cut(s)	466, 497
Hpy188III	TCNNGA	5 cut(s)	161, 183, 358, 608, 629
Hpy8I	GTNNAC	4 cut(s)	6, 267, 402, 487
HpyAV	CCTTC	2 cut(s)	322, 629
HpyCH4III	ACNGT	4 cut(s)	10, 180, 257, 700
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	4 cut(s)	22, 29, 650, 670
HpyF10VI	GCNNNNNNNGC	3 cut(s)	498, 521, 656
HpyF3I	CTNAG	1 cut(s)	679
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	5 cut(s)	112, 274, 346, 619, 722
KflI	GGGWCCC	1 cut(s)	324
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	442, 573
LmnI	GCTCC	1 cut(s)	142
Lsp1109I	GCAGC	4 cut(s)	34, 193, 634, 656
MabI	ACCWGGT	1 cut(s)	652
MaeI	CTAG	2 cut(s)	183, 641
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	2 cut(s)	62, 364
MalI	GATC	2 cut(s)	444, 575
MboI	GATC	2 cut(s)	442, 573
MboII	GAAGA	3 cut(s)	453, 496, 611
MflI	RGATCY	1 cut(s)	573
MhlI	GDGCHC	1 cut(s)	454
MluCI	AATT	4 cut(s)	121, 393, 456, 541
MlyI	GAGTC	1 cut(s)	361
MmeI	TCCRAC	3 cut(s)	120, 256, 363
MnlI	CCTC	8 cut(s)	179, 242, 342, 433, 460, 491, 512, 535
MroXI	GAANNNNTTC	1 cut(s)	156
MseI	TTAA	6 cut(s)	5, 96, 119, 246, 540, 593
MslI	CAYNNNNRTG	1 cut(s)	698
MspA1I	CMGCKG	2 cut(s)	331, 647
MspR9I	CCNGG	1 cut(s)	654
Mva1269I	GAATGC	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	654
MwoI	GCNNNNNNNGC	3 cut(s)	498, 521, 656
NcoI	CCATGG	1 cut(s)	270
NdeI	CATATG	1 cut(s)	384
NdeII	GATC	2 cut(s)	442, 573
NlaIII	CATG	5 cut(s)	112, 274, 346, 619, 722
NlaIV	GGNNCC	4 cut(s)	144, 325, 326, 471
NmuCI	GTSAC	1 cut(s)	364
NspI	RCATGY	2 cut(s)	346, 619
PaqCI	CACCTGC	1 cut(s)	506
PceI	AGGCCT	1 cut(s)	501
PciI	ACATGT	1 cut(s)	342
PctI	GAATGC	1 cut(s)	29
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	196, 604
PkrI	GCNGC	4 cut(s)	24, 208, 646, 649
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
PpuMI	RGGWCCY	1 cut(s)	324
PscI	ACATGT	1 cut(s)	342
Psp5II	RGGWCCY	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	652
PspGI	CCWGG	1 cut(s)	652
PspN4I	GGNNCC	4 cut(s)	144, 325, 326, 471
PspPI	GGNCC	3 cut(s)	278, 324, 470
PspPPI	RGGWCCY	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	573
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	3 cut(s)	12, 266, 614
RsaNI	GTAC	3 cut(s)	11, 265, 613
RseI	CAYNNNNRTG	1 cut(s)	698
SalI	GTCGAC	1 cut(s)	400
SaqAI	TTAA	6 cut(s)	5, 96, 119, 246, 540, 593
SatI	GCNGC	4 cut(s)	23, 207, 645, 648
Sau3AI	GATC	2 cut(s)	442, 573
Sau96I	GGNCC	3 cut(s)	278, 324, 470
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	654
SduI	GDGCHC	1 cut(s)	454
SetI	ASST	9 cut(s)	234, 287, 366, 433, 494, 520, 640, 649, 655
SexAI	ACCWGGT	1 cut(s)	652
SfcI	CTRYAG	1 cut(s)	487
SinI	GGWCC	3 cut(s)	278, 324, 470
SmiI	ATTTAAAT	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	698
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	4 cut(s)	121, 393, 456, 541
SseBI	AGGCCT	1 cut(s)	501
SsiI	CCGC	1 cut(s)	329
SspMI	CTAG	2 cut(s)	183, 641
StuI	AGGCCT	1 cut(s)	501
StyD4I	CCNGG	1 cut(s)	652
StyI	CCWWGG	1 cut(s)	270
SwaI	ATTTAAAT	1 cut(s)	120
TaaI	ACNGT	4 cut(s)	10, 180, 257, 700
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	3 cut(s)	199, 347, 401
TasI	AATT	4 cut(s)	121, 393, 456, 541
TatI	WGTACW	3 cut(s)	10, 264, 612
TfiI	GAWTC	2 cut(s)	196, 604
Tru1I	TTAA	6 cut(s)	5, 96, 119, 246, 540, 593
Tru9I	TTAA	6 cut(s)	5, 96, 119, 246, 540, 593
TscAI	CASTG	3 cut(s)	40, 183, 705
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	4 cut(s)	22, 206, 644, 647
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	3 cut(s)	234, 496, 648
TspGWI	ACGGA	1 cut(s)	517
TspRI	CASTG	3 cut(s)	40, 183, 705
VpaK11BI	GGWCC	3 cut(s)	278, 324, 470
XagI	CCTNNNNNAGG	1 cut(s)	633
XapI	RAATTY	3 cut(s)	121, 393, 456
XbaI	TCTAGA	1 cut(s)	182
XceI	RCATGY	2 cut(s)	346, 619
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
XmiI	GTMKAC	2 cut(s)	401, 486
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	2 cut(s)	183, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.