Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8395539.1

Orthogroup ID

OG0001930

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 876

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8395539.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgatagttttgacagaagacagtgagagcagtagtatttggattttcttgaagccactaagcttgggtctttggttgacaaccggcatagccttcatattaacaggttttgtaatatgggttcttgagcaccgcgaaaacactgagttcagaggtcctccacggcaacaactgggcatgatattctggttctccttttcaaccctcgtctttgcacacagagagaaagtggtgaacaattggtcaaggtttgtgctgattatatgggtttttgtggtgctgatcctaacacagagttacactgcaagcttagcctcaatgttaacagtacagaagttgcagcctgcattcactgatataaatgagatacaaagaaatggttacaaagtaggatatcaaaatggttcctttattaaagggtttctcatagaacatttaaaatttgatgtgaccaagctggtgccattggaaaccatttcggattatcataacgcactgtctagaggaaacaagaatggagttgctgccattttagatgaagtcccttacctcaagttgtttcttaaagcgaaatgttccaagtacaccatggttggaccaacctacaaaactgatggatttggcttt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

209

Amino Acids

23.89

Weight (kDa)

9.14

Isoelectric Point (pI)

24.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06680 FvH4_3g38721 FvH4_4g08410 FvH4_6g06360
prunus_persica	Prupe.1G094600_v2.0.a1 Prupe.1G094700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0403951 RchiOBHm_Chr4g0403991 RchiOBHm_Chr4g0404001 RchiOBHm_Chr4g0404021 RchiOBHm_Chr4g0404081
rosa_laevigata	RLG00000008927 RLG00000008928 RLG00000008929 RLG00000008931 RLG00000008934 RLG00000008935 RLG00000008938 RLG00000008939 RLG00000019466 RLG00000027985 RLG00000032399
rosa_multiflora	Rmu_co8070616.1_g000001 Rmu_co8395539.1_g000001 Rmu_sc0003478.1_g000001 Rmu_sc0003483.1_g000003 Rmu_sc0004781.1_g000004 Rmu_sc0005134.1_g000003 Rmu_sc0006579.1_g000019 Rmu_sc0026037.1_g000003
rosa_roxburghii	Rroxscaffold_5G00348550 Rroxscaffold_5G00348600
rosa_rugosa	Rorug04G0046400 Rorug04G0046700 Rorug04G0046700
rosa_samantha	Rh4BG115300 Rh4BG115500 Rh4CG130700 Rh4CG130800 Rh4DG115400 Rh4DG115700
rosa_wichuraiana	Rw4G009780 Rw4G009790 Rw4G009800 Rw4G009930 Rw4G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	460
AccII	CGCG	1 cut(s)	135
AciI	CCGC	1 cut(s)	133
AclWI	GGATC	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	440
AfaI	GTAC	2 cut(s)	330, 584
AgsI	TTSAA	2 cut(s)	52, 201
AluBI	AGCT	3 cut(s)	63, 309, 457
AluI	AGCT	3 cut(s)	63, 309, 457
Alw21I	GWGCWC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	277
ApeKI	GCWGC	2 cut(s)	340, 524
ApoI	RAATTY	1 cut(s)	440
AspS9I	GGNCC	2 cut(s)	155, 596
AsuHPI	GGTGA	1 cut(s)	244
AvaII	GGWCC	2 cut(s)	155, 596
BanI	GGYRCC	1 cut(s)	460
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	2 cut(s)	352, 511
BccI	CCATC	1 cut(s)	608
BceAI	ACGGC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	501
BisI	GCNGC	2 cut(s)	341, 525
BlpI	GCTNAGC	1 cut(s)	310
BlsI	GCNGC	2 cut(s)	342, 526
Bme18I	GGWCC	2 cut(s)	155, 596
BmgT120I	GGNCC	2 cut(s)	155, 596
BmiI	GGNNCC	2 cut(s)	406, 462
BmrI	ACTGGG	1 cut(s)	182
BmuI	ACTGGG	1 cut(s)	182
BpiI	GAAGAC	1 cut(s)	24
Bpu1102I	GCTNAGC	1 cut(s)	310
BpuEI	CTTGAG	2 cut(s)	146, 536
BsaJI	CCNNGG	2 cut(s)	161, 588
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	177
BseDI	CCNNGG	2 cut(s)	161, 588
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	352, 511
Bsh1236I	CGCG	1 cut(s)	135
BshNI	GGYRCC	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	527
BsmFI	GGGAC	1 cut(s)	527
BsmI	GAATGC	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	282
Bsp1720I	GCTNAGC	1 cut(s)	310
Bsp19I	CCATGG	1 cut(s)	588
BspACI	CCGC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	136
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	406, 462
BspPI	GGATC	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	460
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	177
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	161, 588
BssMI	GATC	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	588
Bst4CI	ACNGT	3 cut(s)	23, 328, 498
BstC8I	GCNNGC	2 cut(s)	307, 345
BstDEI	CTNAG	3 cut(s)	59, 144, 310
BstDSI	CCRYGG	2 cut(s)	161, 588
BstFNI	CGCG	1 cut(s)	135
BstKTI	GATC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	2 cut(s)	352, 511
BstV2I	GAAGAC	1 cut(s)	24
BtgI	CCRYGG	2 cut(s)	161, 588
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	5 cut(s)	28, 141, 300, 351, 494
Cac8I	GCNNGC	2 cut(s)	307, 345
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	2 cut(s)	155, 596
Csp6I	GTAC	2 cut(s)	329, 583
CspCI	CAANNNNNGTGG	2 cut(s)	45, 80
CviAII	CATG	2 cut(s)	178, 589
CviJI	RGCY	8 cut(s)	55, 63, 92, 309, 314, 343, 457, 624
CviKI_1	RGCY	8 cut(s)	55, 63, 92, 309, 314, 343, 457, 624
CviQI	GTAC	2 cut(s)	329, 583
DdeI	CTNAG	3 cut(s)	59, 144, 310
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
DraI	TTTAAA	1 cut(s)	438
Eco130I	CCWWGG	1 cut(s)	588
Eco32I	GATATC	1 cut(s)	395
Eco47I	GGWCC	2 cut(s)	155, 596
EcoO109I	RGGNCCY	1 cut(s)	155
EcoRV	GATATC	1 cut(s)	395
EcoT14I	CCWWGG	1 cut(s)	588
ErhI	CCWWGG	1 cut(s)	588
FaeI	CATG	2 cut(s)	181, 592
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	2 cut(s)	177, 588
Fnu4HI	GCNGC	2 cut(s)	341, 525
Fsp4HI	GCNGC	2 cut(s)	341, 525
FspBI	CTAG	1 cut(s)	501
GluI	GCNGC	2 cut(s)	341, 525
HapII	CCGG	1 cut(s)	84
Hin1II	CATG	2 cut(s)	181, 592
HincII	GTYRAC	2 cut(s)	78, 324
HindII	GTYRAC	2 cut(s)	78, 324
HindIII	AAGCTT	2 cut(s)	61, 307
HpaI	GTTAAC	1 cut(s)	324
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	4 cut(s)	78, 235, 324, 585
Hpy188I	TCNGA	2 cut(s)	152, 481
Hpy188III	TCNNGA	3 cut(s)	49, 125, 501
Hpy8I	GTNNAC	4 cut(s)	78, 235, 324, 585
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	3 cut(s)	23, 328, 498
HpyCH4V	TGCA	4 cut(s)	215, 305, 340, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	3 cut(s)	59, 144, 310
Hsp92II	CATG	2 cut(s)	181, 592
KspAI	GTTAAC	1 cut(s)	324
Kzo9I	GATC	1 cut(s)	282
LpnPI	CCDG	6 cut(s)	90, 97, 158, 172, 357, 443
Lsp1109I	GCAGC	2 cut(s)	352, 511
MaeI	CTAG	1 cut(s)	501
MaeIII	GTNAC	3 cut(s)	296, 380, 448
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	1 cut(s)	29
MfeI	CAATTG	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	2 cut(s)	238, 440
MmeI	TCCRAC	1 cut(s)	574
MnlI	CCTC	6 cut(s)	146, 168, 215, 325, 497, 560
MseI	TTAA	5 cut(s)	101, 323, 414, 437, 564
MspI	CCGG	1 cut(s)	84
MunI	CAATTG	1 cut(s)	238
Mva1269I	GAATGC	1 cut(s)	347
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	311
NcoI	CCATGG	1 cut(s)	588
NdeII	GATC	1 cut(s)	282
NlaIII	CATG	2 cut(s)	181, 592
NlaIV	GGNNCC	2 cut(s)	406, 462
NmuCI	GTSAC	1 cut(s)	448
PctI	GAATGC	1 cut(s)	347
PkrI	GCNGC	2 cut(s)	342, 526
PpuMI	RGGWCCY	1 cut(s)	155
Psp5II	RGGWCCY	1 cut(s)	155
PspN4I	GGNNCC	2 cut(s)	406, 462
PspPI	GGNCC	2 cut(s)	155, 596
PspPPI	RGGWCCY	1 cut(s)	155
PsrI	GAACNNNNNNTAC	2 cut(s)	105, 137
RsaI	GTAC	2 cut(s)	330, 584
RsaNI	GTAC	2 cut(s)	329, 583
SaqAI	TTAA	5 cut(s)	101, 323, 414, 437, 564
SatI	GCNGC	2 cut(s)	341, 525
Sau3AI	GATC	1 cut(s)	282
Sau96I	GGNCC	2 cut(s)	155, 596
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	8 cut(s)	65, 109, 157, 251, 311, 459, 552, 605
SinI	GGWCC	2 cut(s)	155, 596
SmlI	CTYRAG	2 cut(s)	125, 551
SmoI	CTYRAG	2 cut(s)	125, 551
Sse9I	AATT	2 cut(s)	238, 440
SsiI	CCGC	1 cut(s)	133
SspMI	CTAG	1 cut(s)	501
StyI	CCWWGG	1 cut(s)	588
TaaI	ACNGT	3 cut(s)	23, 328, 498
TasI	AATT	2 cut(s)	238, 440
TatI	WGTACW	2 cut(s)	328, 582
Tru1I	TTAA	5 cut(s)	101, 323, 414, 437, 564
Tru9I	TTAA	5 cut(s)	101, 323, 414, 437, 564
TscAI	CASTG	5 cut(s)	28, 148, 307, 358, 501
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	2 cut(s)	340, 524
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	2 cut(s)	85, 552
TspRI	CASTG	5 cut(s)	28, 148, 307, 358, 501
VpaK11BI	GGWCC	2 cut(s)	155, 596
XapI	RAATTY	1 cut(s)	440
XbaI	TCTAGA	1 cut(s)	500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XspI	CTAG	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.