Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001930

Physical Location & Seq

Genomic Coordinates Reverse (-)

43109873 .. 43111147

Gene Structure 1275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008935

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGAGATTATCTATCTCTCACCAATCTATTGAAACAGCGCTGCACTTGATAAACATTGAAAATGTGAGTGCCATTATCGGACTTCAAAGTTCAGCAGAAGCGAAGCATGTGATAGAGCTGGGAAGAAGGAATCATGTTCCCATTCTTTCGTTTTCTGCCACTAGTCCATCTCTTTCTCCATCCCATAGCTCATTTTTCATTCGGACGGCTTTTAGTGACTCTGCTCAAGTAGAAGCCATGGCAGCCATTGTCGGAGCTTATAGTTGGTTGGAAGTTGTTCTCATCTATGAAGACACGGAAGAAATTTTAAAGGAGCTTAACCGCTTGAATTCAACTCGAGCAAGAATATTTTTGGTCCATATGACTGCTTCCCTCGGGTCCAAATTGTTTTTATTAGCAAGTAAGGCAGGGATGATGACCGAAGGGTATGGATGGATTGTTACTGAAGGGTTATCGACTTTATTAGATCCTGTGGGTTCAAGAACCATGAACTCAATGCAAGGTGTAGTGCGAGTAAGGCCATATATACCAATGTCAAAAGAACTTGAAGACTTCGTGTTGCGAATGAAAATATTCAGGTTCAGAAAATCAAGCAAGATTACTGGTGTAAACCTCTTTGGGTTGTGGGCATATGATACAGTTTGGGCATTAGCAATGGCAGTGGAGAAGGTTGGAATAGCAAGCAGAGTTGATCTTGCAAGTTTGGGAACTGGTGACAGGGGTCAAAATCTTCTTGAAGCTATCCTAGATTTAAAATTTGAAAACCTCAGTGGGAATTTCCGGTTGGTTAAGGGACAGTTGGAAGCTTCAACCTTTGAGGTATTTAATGTGATTGGCGGAAAAGAAAGAATAATTGGATATTGGAACCAAATGAAAGGACTTTCCCGAAAGCTGAATGGAGCAGCAAAGTTGAATGTAAGGAAGACACTGGAGAAACCAATCTGGCCAGGGTACACTACAGACATCCCTCCAACAAAGAAATTGAGGATTGGAGTTCCATTGAAAAAGGGTTTTTATGAATTCCTAAAATTCGAAAACAACAATATATCAGGATTCTCTGCTGAGATATTCTTTGCTGCAGAAAAGAAACTGCCATTTTCCCTTTCATATGAGTTTTCTGCCTTCGCGGGGACTTATGATGATCTTCTTTATCAAATTCATCTTCAGGCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

392

Amino Acids

43.58

Weight (kDa)

9.31

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	9 - 100	7.7e-21	Receptor family ligand binding region
Peripla_BP_6	PF13458	11 - 99	3.9e-06	Periplasmic binding protein
ANF_receptor	PF01094	98 - 279	3e-33	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06680 FvH4_3g38721 FvH4_4g08410 FvH4_6g06360
prunus_persica	Prupe.1G094600_v2.0.a1 Prupe.1G094700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0403951 RchiOBHm_Chr4g0403991 RchiOBHm_Chr4g0404001 RchiOBHm_Chr4g0404021 RchiOBHm_Chr4g0404081
rosa_laevigata	RLG00000008927 RLG00000008928 RLG00000008929 RLG00000008931 RLG00000008934 RLG00000008935 RLG00000008938 RLG00000008939 RLG00000019466 RLG00000027985 RLG00000032399
rosa_multiflora	Rmu_co8070616.1_g000001 Rmu_co8395539.1_g000001 Rmu_sc0003478.1_g000001 Rmu_sc0003483.1_g000003 Rmu_sc0004781.1_g000004 Rmu_sc0005134.1_g000003 Rmu_sc0006579.1_g000019 Rmu_sc0026037.1_g000003
rosa_roxburghii	Rroxscaffold_5G00348550 Rroxscaffold_5G00348600
rosa_rugosa	Rorug04G0046400 Rorug04G0046700 Rorug04G0046700
rosa_samantha	Rh4BG115300 Rh4BG115500 Rh4CG130700 Rh4CG130800 Rh4DG115400 Rh4DG115700
rosa_wichuraiana	Rw4G009780 Rw4G009790 Rw4G009800 Rw4G009930 Rw4G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1127
AciI	CCGC	3 cut(s)	322, 837, 1127
AclWI	GGATC	1 cut(s)	461
AcoI	YGGCCR	1 cut(s)	944
AcsI	RAATTY	7 cut(s)	303, 328, 755, 775, 1019, 1028, 1155
AcuI	CTGAAG	2 cut(s)	465, 1148
AfaI	GTAC	1 cut(s)	953
AfeI	AGCGCT	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	1128
AhlI	ACTAGT	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	946
AjuI	GAANNNNNNNTTGG	4 cut(s)	767, 799, 837, 869
AluBI	AGCT	7 cut(s)	118, 189, 257, 316, 740, 806, 892
AluI	AGCT	7 cut(s)	118, 189, 257, 316, 740, 806, 892
AlwI	GGATC	1 cut(s)	461
Ama87I	CYCGRG	2 cut(s)	336, 374
Aor51HI	AGCGCT	1 cut(s)	39
AoxI	GGCC	2 cut(s)	518, 944
ApeKI	GCWGC	4 cut(s)	40, 242, 902, 1076
ApoI	RAATTY	7 cut(s)	303, 328, 755, 775, 1019, 1028, 1155
Asp700I	GAANNNNTTC	2 cut(s)	276, 572
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	355, 378
AsuHPI	GGTGA	2 cut(s)	11, 725
AsuII	TTCGAA	1 cut(s)	1032
AvaI	CYCGRG	2 cut(s)	336, 374
AvaII	GGWCC	2 cut(s)	355, 378
BalI	TGGCCA	1 cut(s)	946
BbsI	GAAGAC	3 cut(s)	297, 555, 929
BbvI	GCAGC	4 cut(s)	27, 254, 914, 1063
BccI	CCATC	3 cut(s)	175, 187, 426
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	1 cut(s)	948
BcuI	ACTAGT	1 cut(s)	161
BfaI	CTAG	2 cut(s)	162, 746
BfmI	CTRYAG	2 cut(s)	957, 1077
BfoI	RGCGCY	1 cut(s)	41
BisI	GCNGC	4 cut(s)	41, 243, 903, 1077
BlsI	GCNGC	4 cut(s)	42, 244, 904, 1078
Bme1390I	CCNGG	1 cut(s)	948
Bme18I	GGWCC	2 cut(s)	355, 378
BmeT110I	CYCGRG	2 cut(s)	336, 374
BmgT120I	GGNCC	2 cut(s)	355, 378
BmiI	GGNNCC	2 cut(s)	379, 866
BmrFI	CCNGG	1 cut(s)	948
BoxI	GACNNNNGTC	1 cut(s)	720
BpiI	GAAGAC	3 cut(s)	297, 555, 929
BpmI	CTGGAG	1 cut(s)	950
Bpu14I	TTCGAA	1 cut(s)	1032
BpuEI	CTTGAG	1 cut(s)	210
BsaJI	CCNNGG	3 cut(s)	237, 373, 947
BsaWI	WCCGGW	1 cut(s)	780
Bsc4I	CCNNNNNNNGG	1 cut(s)	1128
Bse1I	ACTGG	3 cut(s)	607, 715, 933
Bse3DI	GCAATG	1 cut(s)	660
BseBI	CCWGG	1 cut(s)	948
BseDI	CCNNGG	3 cut(s)	237, 373, 947
BseGI	GGATG	4 cut(s)	179, 417, 437, 963
BseLI	CCNNNNNNNGG	1 cut(s)	1128
BseMI	GCAATG	1 cut(s)	660
BseMII	CTCAG	2 cut(s)	781, 1053
BseNI	ACTGG	3 cut(s)	607, 715, 933
BseXI	GCAGC	4 cut(s)	27, 254, 914, 1063
BseYI	CCCAGC	1 cut(s)	118
BsgI	GTGCAG	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	1127
BshFI	GGCC	2 cut(s)	520, 946
BsiHKCI	CYCGRG	2 cut(s)	336, 374
BsiSI	CCGG	1 cut(s)	781
BslFI	GGGAC	2 cut(s)	807, 1144
BslI	CCNNNNNNNGG	1 cut(s)	1128
BsmFI	GGGAC	2 cut(s)	807, 1144
BsnI	GGCC	2 cut(s)	520, 946
BsoBI	CYCGRG	2 cut(s)	336, 374
Bsp119I	TTCGAA	1 cut(s)	1032
Bsp143I	GATC	3 cut(s)	466, 691, 1141
Bsp19I	CCATGG	1 cut(s)	237
BspACI	CCGC	3 cut(s)	322, 837, 1127
BspANI	GGCC	2 cut(s)	520, 946
BspCNI	CTCAG	2 cut(s)	780, 1054
BspFNI	CGCG	1 cut(s)	1127
BspLI	GGNNCC	2 cut(s)	379, 866
BspMAI	CTGCAG	1 cut(s)	1081
BspPI	GGATC	1 cut(s)	461
BspT104I	TTCGAA	1 cut(s)	1032
BsrDI	GCAATG	1 cut(s)	660
BsrI	ACTGG	3 cut(s)	607, 715, 933
BssECI	CCNNGG	3 cut(s)	237, 373, 947
BssMI	GATC	3 cut(s)	466, 691, 1141
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	948
Bst4CI	ACNGT	2 cut(s)	640, 798
BstBI	TTCGAA	1 cut(s)	1032
BstC8I	GCNNGC	1 cut(s)	682
BstDEI	CTNAG	2 cut(s)	767, 1062
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	4 cut(s)	179, 417, 437, 963
BstFNI	CGCG	1 cut(s)	1127
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	3 cut(s)	469, 694, 1144
BstMBI	GATC	3 cut(s)	466, 691, 1141
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 404, 517
BstNI	CCWGG	1 cut(s)	948
BstNSI	RCATGY	1 cut(s)	110
BstPAI	GACNNNNGTC	1 cut(s)	720
BstSCI	CCNGG	1 cut(s)	946
BstSFI	CTRYAG	2 cut(s)	957, 1077
BstUI	CGCG	1 cut(s)	1127
BstV1I	GCAGC	4 cut(s)	27, 254, 914, 1063
BstV2I	GAAGAC	3 cut(s)	297, 555, 929
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BsuRI	GGCC	2 cut(s)	520, 946
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	4 cut(s)	179, 417, 437, 963
BtsI	GCAGTG	1 cut(s)	666
BtsIMutI	CAGTG	3 cut(s)	666, 775, 926
Cac8I	GCNNGC	1 cut(s)	682
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	355, 378
Csp6I	GTAC	1 cut(s)	952
CspCI	CAANNNNNGTGG	2 cut(s)	642, 677
CviAII	CATG	4 cut(s)	107, 134, 238, 487
CviQI	GTAC	1 cut(s)	952
DdeI	CTNAG	2 cut(s)	767, 1062
DpnI	GATC	3 cut(s)	468, 693, 1143
DpnII	GATC	3 cut(s)	466, 691, 1141
DraI	TTTAAA	2 cut(s)	309, 753
EaeI	YGGCCR	1 cut(s)	944
EciI	GGCGGA	1 cut(s)	852
Eco130I	CCWWGG	1 cut(s)	237
Eco47I	GGWCC	2 cut(s)	355, 378
Eco47III	AGCGCT	1 cut(s)	39
Eco57I	CTGAAG	2 cut(s)	465, 1148
Eco88I	CYCGRG	2 cut(s)	336, 374
EcoRI	GAATTC	2 cut(s)	328, 1019
EcoRII	CCWGG	1 cut(s)	946
EcoT14I	CCWWGG	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	4 cut(s)	110, 137, 241, 490
FaqI	GGGAC	2 cut(s)	807, 1144
FatI	CATG	4 cut(s)	106, 133, 237, 486
FauI	CCCGC	1 cut(s)	1120
FauNDI	CATATG	3 cut(s)	360, 631, 1108
Fnu4HI	GCNGC	4 cut(s)	41, 243, 903, 1077
FokI	GGATG	4 cut(s)	166, 424, 444, 950
Fsp4HI	GCNGC	4 cut(s)	41, 243, 903, 1077
FspBI	CTAG	2 cut(s)	162, 746
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	4 cut(s)	41, 243, 903, 1077
GsaI	CCCAGC	1 cut(s)	122
GsuI	CTGGAG	1 cut(s)	950
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	520, 946
HapII	CCGG	1 cut(s)	781
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	4 cut(s)	110, 137, 241, 490
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HindIII	AAGCTT	1 cut(s)	804
HinfI	GANTC	3 cut(s)	130, 218, 1053
HpaII	CCGG	1 cut(s)	781
HphI	GGTGA	2 cut(s)	11, 725
Hpy166II	GTNNAC	2 cut(s)	610, 954
Hpy188I	TCNGA	4 cut(s)	80, 204, 254, 584
Hpy188III	TCNNGA	4 cut(s)	480, 734, 885, 1050
Hpy8I	GTNNAC	2 cut(s)	610, 954
HpyAV	CCTTC	5 cut(s)	120, 416, 440, 661, 1132
HpyCH4III	ACNGT	2 cut(s)	640, 798
HpyCH4V	TGCA	4 cut(s)	43, 499, 698, 1079
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 404, 517
HpyF3I	CTNAG	2 cut(s)	767, 1062
Hsp92II	CATG	4 cut(s)	110, 137, 241, 490
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	3 cut(s)	466, 691, 1141
LmnI	GCTCC	3 cut(s)	254, 313, 899
Lsp1109I	GCAGC	4 cut(s)	27, 254, 914, 1063
MaeI	CTAG	2 cut(s)	162, 746
MaeIII	GTNAC	3 cut(s)	215, 439, 713
MalI	GATC	3 cut(s)	468, 693, 1143
MboI	GATC	3 cut(s)	466, 691, 1141
MboII	GAAGA	8 cut(s)	135, 302, 311, 560, 722, 934, 1136, 1154
MflI	RGATCY	1 cut(s)	466
MlsI	TGGCCA	1 cut(s)	946
MluNI	TGGCCA	1 cut(s)	946
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	5 cut(s)	232, 249, 652, 780, 995
MnlI	CCTC	6 cut(s)	383, 623, 776, 811, 978, 978
Mox20I	TGGCCA	1 cut(s)	946
MroXI	GAANNNNTTC	2 cut(s)	276, 572
MscI	TGGCCA	1 cut(s)	946
MseI	TTAA	5 cut(s)	308, 318, 752, 789, 825
Msp20I	TGGCCA	1 cut(s)	946
MspI	CCGG	1 cut(s)	781
MspR9I	CCNGG	1 cut(s)	948
MvaI	CCWGG	1 cut(s)	948
MvnI	CGCG	1 cut(s)	1127
MwoI	GCNNNNNNNGC	3 cut(s)	242, 404, 517
NcoI	CCATGG	1 cut(s)	237
NdeI	CATATG	3 cut(s)	360, 631, 1108
NdeII	GATC	3 cut(s)	466, 691, 1141
NlaIII	CATG	4 cut(s)	110, 137, 241, 490
NlaIV	GGNNCC	2 cut(s)	379, 866
NmuCI	GTSAC	2 cut(s)	215, 713
NspI	RCATGY	1 cut(s)	110
NspV	TTCGAA	1 cut(s)	1032
PaeR7I	CTCGAG	1 cut(s)	336
PdmI	GAANNNNTTC	2 cut(s)	276, 572
PfeI	GAWTC	2 cut(s)	130, 1053
PkrI	GCNGC	4 cut(s)	42, 244, 904, 1078
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PshAI	GACNNNNGTC	1 cut(s)	720
Psp6I	CCWGG	1 cut(s)	946
PspFI	CCCAGC	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	946
PspN4I	GGNNCC	2 cut(s)	379, 866
PspPI	GGNCC	2 cut(s)	355, 378
PspXI	VCTCGAGB	1 cut(s)	336
PstI	CTGCAG	1 cut(s)	1081
PsuI	RGATCY	1 cut(s)	466
RsaI	GTAC	1 cut(s)	953
RsaNI	GTAC	1 cut(s)	952
SaqAI	TTAA	5 cut(s)	308, 318, 752, 789, 825
SatI	GCNGC	4 cut(s)	41, 243, 903, 1077
Sau3AI	GATC	3 cut(s)	466, 691, 1141
Sau96I	GGNCC	2 cut(s)	355, 378
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	948
SfcI	CTRYAG	2 cut(s)	957, 1077
Sfr274I	CTCGAG	1 cut(s)	336
SfuI	TTCGAA	1 cut(s)	1032
SinI	GGWCC	2 cut(s)	355, 378
SlaI	CTCGAG	1 cut(s)	336
SmlI	CTYRAG	2 cut(s)	225, 336
SmoI	CTYRAG	2 cut(s)	225, 336
SpeI	ACTAGT	1 cut(s)	161
SsiI	CCGC	3 cut(s)	322, 837, 1127
SspI	AATATT	2 cut(s)	348, 573
SspMI	CTAG	2 cut(s)	162, 746
StyD4I	CCNGG	1 cut(s)	946
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	2 cut(s)	640, 798
TaqI	TCGA	3 cut(s)	337, 455, 1032
TaqII	GACCGA	1 cut(s)	434
TfiI	GAWTC	2 cut(s)	130, 1053
Tru1I	TTAA	5 cut(s)	308, 318, 752, 789, 825
Tru9I	TTAA	5 cut(s)	308, 318, 752, 789, 825
TscAI	CASTG	3 cut(s)	666, 775, 933
TseFI	GTSAC	2 cut(s)	215, 713
TseI	GCWGC	4 cut(s)	40, 242, 902, 1076
Tsp45I	GTSAC	2 cut(s)	215, 713
TspDTI	ATGAA	8 cut(s)	187, 303, 503, 581, 887, 1032, 1095, 1148
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	3 cut(s)	666, 775, 933
VpaK11BI	GGWCC	2 cut(s)	355, 378
XapI	RAATTY	7 cut(s)	303, 328, 755, 775, 1019, 1028, 1155
XceI	RCATGY	1 cut(s)	110
XhoI	CTCGAG	1 cut(s)	336
XmnI	GAANNNNTTC	2 cut(s)	276, 572
XspI	CTAG	2 cut(s)	162, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.