Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001930

Physical Location & Seq

Genomic Coordinates Reverse (-)

33018834 .. 33019277

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g38721.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGATGTGCGTACCTCGAATCAATGATGAGTTAGTGACCGAGGGAGGTGGTGGTTTGAGGGTGCGGCCTCGGCTTGGAGGAAGACATCGAACTGGTGGTGGTCAGGAGAGGGAGAGGGAGGTCAAGAACTGGTGGTGGTCGGGAACAGGAGAGGGAGGTCGGGAAGTGGTGGTGGTCAGGAACGGGAGAGGGAGGTCAGGAATTGGTGGTGGTCGGGAACGGGAGAGGGAGGTCGGGATTTGGTGGTGGTCGACTGGTCGCGAACTGGTGGAGAAGGAGAGGGAGAGGGAGATCGGGAGAGGGAGAGGGAGAGGGAAAGGGAGGTCGGGAATTGGTGATGGTCGCGAACTGGTGGAGAAGGAGAGGGAGAGGGAGATCGGGAGAGGGAAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

14.79

Weight (kDa)

10.83

Isoelectric Point (pI)

22.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06680 FvH4_3g38721 FvH4_4g08410 FvH4_6g06360
prunus_persica	Prupe.1G094600_v2.0.a1 Prupe.1G094700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0403951 RchiOBHm_Chr4g0403991 RchiOBHm_Chr4g0404001 RchiOBHm_Chr4g0404021 RchiOBHm_Chr4g0404081
rosa_laevigata	RLG00000008927 RLG00000008928 RLG00000008929 RLG00000008931 RLG00000008934 RLG00000008935 RLG00000008938 RLG00000008939 RLG00000019466 RLG00000027985 RLG00000032399
rosa_multiflora	Rmu_co8070616.1_g000001 Rmu_co8395539.1_g000001 Rmu_sc0003478.1_g000001 Rmu_sc0003483.1_g000003 Rmu_sc0004781.1_g000004 Rmu_sc0005134.1_g000003 Rmu_sc0006579.1_g000019 Rmu_sc0026037.1_g000003
rosa_roxburghii	Rroxscaffold_5G00348550 Rroxscaffold_5G00348600
rosa_rugosa	Rorug04G0046400 Rorug04G0046700 Rorug04G0046700
rosa_samantha	Rh4BG115300 Rh4BG115500 Rh4CG130700 Rh4CG130800 Rh4DG115400 Rh4DG115700
rosa_wichuraiana	Rw4G009780 Rw4G009790 Rw4G009800 Rw4G009930 Rw4G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	251
AccII	CGCG	2 cut(s)	261, 345
AciI	CCGC	1 cut(s)	64
AfaI	GTAC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	347
BbsI	GAAGAC	1 cut(s)	88
BccI	CCATC	1 cut(s)	332
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	88
BsaJI	CCNNGG	2 cut(s)	39, 68
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	5 cut(s)	97, 134, 259, 270, 354
BseDI	CCNNGG	2 cut(s)	39, 68
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseNI	ACTGG	5 cut(s)	97, 134, 259, 270, 354
Bsh1236I	CGCG	2 cut(s)	261, 345
BshFI	GGCC	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	74
BsnI	GGCC	1 cut(s)	67
Bsp143I	GATC	2 cut(s)	291, 375
Bsp68I	TCGCGA	2 cut(s)	261, 345
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	67
BspFNI	CGCG	2 cut(s)	261, 345
BsrI	ACTGG	5 cut(s)	97, 134, 259, 270, 354
BssECI	CCNNGG	2 cut(s)	39, 68
BssMI	GATC	2 cut(s)	291, 375
BstFNI	CGCG	2 cut(s)	261, 345
BstKTI	GATC	2 cut(s)	294, 378
BstMBI	GATC	2 cut(s)	291, 375
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstUI	CGCG	2 cut(s)	261, 345
BstV2I	GAAGAC	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	67
BtuMI	TCGCGA	2 cut(s)	261, 345
Csp6I	GTAC	1 cut(s)	11
CviJI	RGCY	2 cut(s)	67, 73
CviKI_1	RGCY	2 cut(s)	67, 73
CviQI	GTAC	1 cut(s)	11
DpnI	GATC	2 cut(s)	293, 377
DpnII	GATC	2 cut(s)	291, 375
FblI	GTMKAC	1 cut(s)	251
Fnu4HI	GCNGC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	65
GluI	GCNGC	1 cut(s)	65
HaeIII	GGCC	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	1 cut(s)	18
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	252
Hpy8I	GTNNAC	1 cut(s)	252
HpyAV	CCTTC	3 cut(s)	268, 352, 382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	291, 375
LpnPI	CCDG	9 cut(s)	78, 89, 115, 132, 163, 183, 240, 251, 335
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	2 cut(s)	293, 377
MboI	GATC	2 cut(s)	291, 375
MboII	GAAGA	1 cut(s)	93
MluCI	AATT	2 cut(s)	201, 330
MvnI	CGCG	2 cut(s)	261, 345
MwoI	GCNNNNNNNGC	1 cut(s)	70
NdeII	GATC	2 cut(s)	291, 375
NmeAIII	GCCGAG	1 cut(s)	49
NmuCI	GTSAC	1 cut(s)	34
NruI	TCGCGA	2 cut(s)	261, 345
PfeI	GAWTC	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	66
RruI	TCGCGA	2 cut(s)	261, 345
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
SalI	GTCGAC	1 cut(s)	250
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	2 cut(s)	291, 375
SetI	ASST	7 cut(s)	16, 49, 123, 160, 197, 234, 326
Sse9I	AATT	2 cut(s)	201, 330
SsiI	CCGC	1 cut(s)	64
TaqI	TCGA	3 cut(s)	16, 88, 251
TaqII	GACCGA	1 cut(s)	53
TasI	AATT	2 cut(s)	201, 330
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
XmiI	GTMKAC	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.