Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001930

Physical Location & Seq

Genomic Coordinates Forward (+)

19497866 .. 19499315

Gene Structure 1450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG115300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGTAAACCAGAAGCGCTTCCTCTGGTTCATCTTCATTGTTTTGTTCAGCCCTGGGATCGAGCCATCAACGACGAAAGAAGTGATAGTAGGAGTTGTTCTTAACTTAAATTCCTCAGTGGGAGCTATGGCAGAGAAGTGCATGACCATGGCACGTGATGATTTTTATGCTAAGCATGCTCATTATCAAACAAGGCTTTCCCTTCTCCCCAGGGATTCAAAGAATGATGTTGTTTCGGCAGCATTTGAAGCACAGCACTTGATAAACATCGAAAGAGTGAGTGCCATTATCGGACCTCAAAGTTCAGCAGAAGCAAAGTTTTTGATAGAGCTGGGAAGAAGGAATCATGTACCGATTATTTCGTTTTCTGCCACTAGTCCATCTCTTTCTCCATCCCATAGCTCATTTTTCATTCGGACGGGTTTTAGTGACTCTGCTCAAGTAGAAGCCATAGCTGCAATCGTCGGAGCTTATAGTAAGTGGTTGGAAGTTGTTCTCATCTATGAAGACACGGAGTATGGAAATAGCTTAATTCCATATTTGGTAGACGCTTTCCAGAAAGTTGGAGCTCGAGTACCTCATAGAAGTGTCATTCCTCCTCATTATAATGACACAGAAATTTTAAAGGAGCTTAACCGCTTGAATTCAACTCGAGGAAGAATATTTTTGGTCCATATGACTGCTTCCCTCGGGTCCAAATTGTTTTTATTAGCAAGTAAGGCAGGGATGATGACCGAAGGGTATGGATGGATTGTTACGGAAGGGTTATCGACTTTATTAGATCCTGTGGGTTCAAGAACCATGGACTCAATGCAAGGTGTAGTGGGAGTAAGGCCATATATACCAATGTCAAAAGAACTTGAAGACTTCGTGTTGCGAATGAAAAGATTCAGGTTCAGAAAATCAAGCAAGATTACTGGTGTAAACCTCTTTGGGTTGTGGGCATATGATACAGTTTGGGCATTAGCAATGGCAGTGGAGAAGATTGGAACAGCAAGCAGAGTTGATCTTGCAAGTTTGGGAACTGGTGACAGGGGTCAAAACCTTCTTGAAGCTATCCTAGATTCAGAATTTGAAGGCCTCAGTGGGAATTTCCGGTTGGTTAATGGACAGTTGGAAGCTTCAACCTTTGAGGTGTTTAATGTGATTGGCGGAAAAGAAAGAATAATTGGATATTGGAACCAAATGAAAGGACTTTCCCGAAAGCTGAATGGAGCAGCAAAGTTGGATGTAAGGAAGACACTCGAGAAACCAATCTGGCCAGGGTACACTACAGACATCCCTCCAACAAAGAAATTGAGGATTGGAGTTCCCTTGAAAAAGGTTTTTATGAATTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

446

Amino Acids

49.54

Weight (kDa)

9.44

Isoelectric Point (pI)

31.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	38 - 338	1.9e-21	Periplasmic binding protein
ANF_receptor	PF01094	45 - 384	4.2e-77	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06680 FvH4_3g38721 FvH4_4g08410 FvH4_6g06360
prunus_persica	Prupe.1G094600_v2.0.a1 Prupe.1G094700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0403951 RchiOBHm_Chr4g0403991 RchiOBHm_Chr4g0404001 RchiOBHm_Chr4g0404021 RchiOBHm_Chr4g0404081
rosa_laevigata	RLG00000008927 RLG00000008928 RLG00000008929 RLG00000008931 RLG00000008934 RLG00000008935 RLG00000008938 RLG00000008939 RLG00000019466 RLG00000027985 RLG00000032399
rosa_multiflora	Rmu_co8070616.1_g000001 Rmu_co8395539.1_g000001 Rmu_sc0003478.1_g000001 Rmu_sc0003483.1_g000003 Rmu_sc0004781.1_g000004 Rmu_sc0005134.1_g000003 Rmu_sc0006579.1_g000019 Rmu_sc0026037.1_g000003
rosa_roxburghii	Rroxscaffold_5G00348550 Rroxscaffold_5G00348600
rosa_rugosa	Rorug04G0046400 Rorug04G0046700 Rorug04G0046700
rosa_samantha	Rh4BG115300 Rh4BG115500 Rh4CG130700 Rh4CG130800 Rh4DG115400 Rh4DG115700
rosa_wichuraiana	Rw4G009780 Rw4G009790 Rw4G009800 Rw4G009930 Rw4G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	606
AccI	GTMKAC	1 cut(s)	546
AciI	CCGC	2 cut(s)	637, 1152
AclWI	GGATC	2 cut(s)	65, 776
AcoI	YGGCCR	1 cut(s)	1259
AcsI	RAATTY	6 cut(s)	109, 618, 643, 1070, 1090, 1333
AcvI	CACGTG	1 cut(s)	155
AfaI	GTAC	3 cut(s)	351, 576, 1268
AfeI	AGCGCT	1 cut(s)	17
AhlI	ACTAGT	1 cut(s)	374
AjnI	CCWGG	3 cut(s)	52, 209, 1261
AjuI	GAANNNNNNNTTGG	4 cut(s)	1082, 1114, 1152, 1184
Alw21I	GWGCWC	1 cut(s)	571
AlwI	GGATC	2 cut(s)	65, 776
Ama87I	CYCGRG	4 cut(s)	570, 651, 689, 1244
Aor51HI	AGCGCT	1 cut(s)	17
AoxI	GGCC	3 cut(s)	833, 1078, 1259
ApeKI	GCWGC	3 cut(s)	239, 455, 1217
ApoI	RAATTY	6 cut(s)	109, 618, 643, 1070, 1090, 1333
Asp700I	GAANNNNTTC	3 cut(s)	17, 492, 887
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	3 cut(s)	293, 670, 693
AsuHPI	GGTGA	1 cut(s)	1040
AvaI	CYCGRG	4 cut(s)	570, 651, 689, 1244
AvaII	GGWCC	3 cut(s)	293, 670, 693
BalI	TGGCCA	1 cut(s)	1261
BanII	GRGCYC	1 cut(s)	571
BbrPI	CACGTG	1 cut(s)	155
BbsI	GAAGAC	3 cut(s)	513, 870, 1244
Bbv12I	GWGCWC	1 cut(s)	571
BbvI	GCAGC	3 cut(s)	251, 442, 1229
BccI	CCATC	4 cut(s)	73, 388, 400, 741
BciT130I	CCWGG	3 cut(s)	54, 211, 1263
BcuI	ACTAGT	1 cut(s)	374
BfaI	CTAG	2 cut(s)	375, 1061
BfmI	CTRYAG	1 cut(s)	1272
BfoI	RGCGCY	1 cut(s)	19
BisI	GCNGC	3 cut(s)	240, 456, 1218
BlpI	GCTNAGC	1 cut(s)	171
BlsI	GCNGC	3 cut(s)	241, 457, 1219
Bme1390I	CCNGG	3 cut(s)	54, 211, 1263
Bme18I	GGWCC	3 cut(s)	293, 670, 693
BmeT110I	CYCGRG	4 cut(s)	570, 651, 689, 1244
BmgT120I	GGNCC	3 cut(s)	293, 670, 693
BmiI	GGNNCC	2 cut(s)	694, 1181
BmrFI	CCNGG	3 cut(s)	54, 211, 1263
BoxI	GACNNNNGTC	1 cut(s)	1035
BpiI	GAAGAC	3 cut(s)	513, 870, 1244
Bpu1102I	GCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	423
BsaAI	YACGTR	1 cut(s)	155
BsaBI	GATNNNNATC	1 cut(s)	266
BsaJI	CCNNGG	8 cut(s)	52, 53, 147, 209, 210, 688, 801, 1262
BsaWI	WCCGGW	1 cut(s)	1095
BsaXI	ACNNNNNCTCC	2 cut(s)	558, 588
Bse1I	ACTGG	2 cut(s)	922, 1030
Bse3DI	GCAATG	1 cut(s)	975
Bse8I	GATNNNNATC	1 cut(s)	266
BseBI	CCWGG	3 cut(s)	54, 211, 1263
BseDI	CCNNGG	8 cut(s)	52, 53, 147, 209, 210, 688, 801, 1262
BseGI	GGATG	5 cut(s)	392, 732, 752, 1234, 1278
BseJI	GATNNNNATC	1 cut(s)	266
BseMI	GCAATG	1 cut(s)	975
BseMII	CTCAG	2 cut(s)	129, 1096
BseNI	ACTGG	2 cut(s)	922, 1030
BseRI	GAGGAG	1 cut(s)	588
BseXI	GCAGC	3 cut(s)	251, 442, 1229
BseYI	CCCAGC	1 cut(s)	331
BshFI	GGCC	3 cut(s)	835, 1080, 1261
BsiHKAI	GWGCWC	1 cut(s)	571
BsiHKCI	CYCGRG	4 cut(s)	570, 651, 689, 1244
BsiSI	CCGG	1 cut(s)	1096
BsnI	GGCC	3 cut(s)	835, 1080, 1261
BsoBI	CYCGRG	4 cut(s)	570, 651, 689, 1244
Bsp1286I	GDGCHC	1 cut(s)	571
Bsp143I	GATC	3 cut(s)	57, 781, 1006
Bsp1720I	GCTNAGC	1 cut(s)	171
Bsp19I	CCATGG	2 cut(s)	147, 801
BspACI	CCGC	2 cut(s)	637, 1152
BspANI	GGCC	3 cut(s)	835, 1080, 1261
BspCNI	CTCAG	2 cut(s)	128, 1095
BspLI	GGNNCC	2 cut(s)	694, 1181
BspPI	GGATC	2 cut(s)	65, 776
BsrDI	GCAATG	1 cut(s)	975
BsrI	ACTGG	2 cut(s)	922, 1030
BssECI	CCNNGG	8 cut(s)	52, 53, 147, 209, 210, 688, 801, 1262
BssMI	GATC	3 cut(s)	57, 781, 1006
BssT1I	CCWWGG	2 cut(s)	147, 801
Bst2UI	CCWGG	3 cut(s)	54, 211, 1263
Bst4CI	ACNGT	2 cut(s)	955, 1113
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	177, 997
BstDEI	CTNAG	3 cut(s)	115, 171, 1082
BstDSI	CCRYGG	2 cut(s)	147, 801
BstF5I	GGATG	5 cut(s)	392, 732, 752, 1234, 1278
BstH2I	RGCGCY	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	3 cut(s)	60, 784, 1009
BstMBI	GATC	3 cut(s)	57, 781, 1006
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 248, 455, 719
BstNI	CCWGG	3 cut(s)	54, 211, 1263
BstNSI	RCATGY	1 cut(s)	179
BstPAI	GACNNNNGTC	1 cut(s)	1035
BstSCI	CCNGG	3 cut(s)	52, 209, 1261
BstSFI	CTRYAG	1 cut(s)	1272
BstV1I	GCAGC	3 cut(s)	251, 442, 1229
BstV2I	GAAGAC	3 cut(s)	513, 870, 1244
BstX2I	RGATCY	1 cut(s)	781
BstXI	CCANNNNNNTGG	1 cut(s)	563
BstYI	RGATCY	1 cut(s)	781
BsuRI	GGCC	3 cut(s)	835, 1080, 1261
BtgI	CCRYGG	2 cut(s)	147, 801
BtsCI	GGATG	5 cut(s)	392, 732, 752, 1234, 1278
BtsI	GCAGTG	1 cut(s)	981
BtsIMutI	CAGTG	3 cut(s)	123, 981, 1090
Cac8I	GCNNGC	2 cut(s)	177, 997
CfoI	GCGC	1 cut(s)	18
Cfr13I	GGNCC	3 cut(s)	293, 670, 693
CseI	GACGC	1 cut(s)	557
Csp6I	GTAC	3 cut(s)	350, 575, 1267
CspCI	CAANNNNNGTGG	2 cut(s)	957, 992
CviAII	CATG	5 cut(s)	142, 148, 176, 347, 802
CviQI	GTAC	3 cut(s)	350, 575, 1267
DdeI	CTNAG	3 cut(s)	115, 171, 1082
DpnI	GATC	3 cut(s)	59, 783, 1008
DpnII	GATC	3 cut(s)	57, 781, 1006
DraI	TTTAAA	1 cut(s)	624
EaeI	YGGCCR	1 cut(s)	1259
EciI	GGCGGA	1 cut(s)	1167
Ecl136II	GAGCTC	1 cut(s)	569
Eco130I	CCWWGG	2 cut(s)	147, 801
Eco147I	AGGCCT	1 cut(s)	1080
Eco24I	GRGCYC	1 cut(s)	571
Eco47I	GGWCC	3 cut(s)	293, 670, 693
Eco47III	AGCGCT	1 cut(s)	17
Eco53kI	GAGCTC	1 cut(s)	569
Eco72I	CACGTG	1 cut(s)	155
Eco88I	CYCGRG	4 cut(s)	570, 651, 689, 1244
EcoICRI	GAGCTC	1 cut(s)	569
EcoRI	GAATTC	2 cut(s)	643, 1333
EcoRII	CCWGG	3 cut(s)	52, 209, 1261
EcoT14I	CCWWGG	2 cut(s)	147, 801
EcoT38I	GRGCYC	1 cut(s)	571
ErhI	CCWWGG	2 cut(s)	147, 801
FaeI	CATG	5 cut(s)	145, 151, 179, 350, 805
FatI	CATG	5 cut(s)	141, 147, 175, 346, 801
FauNDI	CATATG	2 cut(s)	675, 946
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	3 cut(s)	240, 456, 1218
FokI	GGATG	5 cut(s)	379, 739, 759, 1241, 1265
FriOI	GRGCYC	1 cut(s)	571
Fsp4HI	GCNGC	3 cut(s)	240, 456, 1218
FspBI	CTAG	2 cut(s)	375, 1061
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	3 cut(s)	240, 456, 1218
GsaI	CCCAGC	1 cut(s)	335
HaeII	RGCGCY	1 cut(s)	19
HaeIII	GGCC	3 cut(s)	835, 1080, 1261
HapII	CCGG	1 cut(s)	1096
HgaI	GACGC	1 cut(s)	557
HhaI	GCGC	1 cut(s)	18
Hin1II	CATG	5 cut(s)	145, 151, 179, 350, 805
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	1119
HinfI	GANTC	6 cut(s)	215, 343, 431, 806, 888, 1064
HpaII	CCGG	1 cut(s)	1096
HphI	GGTGA	1 cut(s)	1040
Hpy166II	GTNNAC	4 cut(s)	7, 547, 925, 1269
Hpy188I	TCNGA	5 cut(s)	293, 417, 467, 899, 1069
Hpy188III	TCNNGA	5 cut(s)	556, 795, 1049, 1200, 1246
Hpy8I	GTNNAC	4 cut(s)	7, 547, 925, 1269
Hpy99I	CGWCG	2 cut(s)	76, 467
HpyAV	CCTTC	6 cut(s)	212, 333, 731, 755, 1055, 1070
HpyCH4III	ACNGT	2 cut(s)	955, 1113
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	4 cut(s)	141, 458, 814, 1013
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 248, 455, 719
HpyF3I	CTNAG	3 cut(s)	115, 171, 1082
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	5 cut(s)	145, 151, 179, 350, 805
HspAI	GCGC	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	57, 781, 1006
LmnI	GCTCC	5 cut(s)	122, 467, 566, 628, 1214
Lsp1109I	GCAGC	3 cut(s)	251, 442, 1229
MaeI	CTAG	2 cut(s)	375, 1061
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	3 cut(s)	428, 754, 1028
MalI	GATC	3 cut(s)	59, 783, 1008
MboI	GATC	3 cut(s)	57, 781, 1006
MboII	GAAGA	7 cut(s)	25, 348, 518, 669, 875, 994, 1249
MflI	RGATCY	1 cut(s)	781
MhlI	GDGCHC	1 cut(s)	571
MlsI	TGGCCA	1 cut(s)	1261
MluNI	TGGCCA	1 cut(s)	1261
MlyI	GAGTC	2 cut(s)	425, 800
MmeI	TCCRAC	6 cut(s)	445, 465, 544, 1095, 1206, 1310
Mox20I	TGGCCA	1 cut(s)	1261
MroXI	GAANNNNTTC	3 cut(s)	17, 492, 887
MscI	TGGCCA	1 cut(s)	1261
MseI	TTAA	7 cut(s)	102, 107, 530, 623, 633, 1104, 1140
MslI	CAYNNNNRTG	3 cut(s)	146, 585, 606
Msp20I	TGGCCA	1 cut(s)	1261
MspI	CCGG	1 cut(s)	1096
MspR9I	CCNGG	3 cut(s)	54, 211, 1263
MvaI	CCWGG	3 cut(s)	54, 211, 1263
MwoI	GCNNNNNNNGC	4 cut(s)	176, 248, 455, 719
NcoI	CCATGG	2 cut(s)	147, 801
NdeI	CATATG	2 cut(s)	675, 946
NdeII	GATC	3 cut(s)	57, 781, 1006
NlaIII	CATG	5 cut(s)	145, 151, 179, 350, 805
NlaIV	GGNNCC	2 cut(s)	694, 1181
NmuCI	GTSAC	2 cut(s)	428, 1028
NspI	RCATGY	1 cut(s)	179
PaeI	GCATGC	1 cut(s)	179
PaeR7I	CTCGAG	3 cut(s)	570, 651, 1244
PasI	CCCWGGG	2 cut(s)	53, 210
PceI	AGGCCT	1 cut(s)	1080
PdmI	GAANNNNTTC	3 cut(s)	17, 492, 887
PfeI	GAWTC	4 cut(s)	215, 343, 888, 1064
PkrI	GCNGC	3 cut(s)	241, 457, 1219
PleI	GAGTC	2 cut(s)	425, 800
PmaCI	CACGTG	1 cut(s)	155
PmlI	CACGTG	1 cut(s)	155
PpsI	GAGTC	2 cut(s)	425, 800
Ppu21I	YACGTR	1 cut(s)	155
PshAI	GACNNNNGTC	1 cut(s)	1035
PsiI	TTATAA	1 cut(s)	606
Psp124BI	GAGCTC	1 cut(s)	571
Psp6I	CCWGG	3 cut(s)	52, 209, 1261
PspCI	CACGTG	1 cut(s)	155
PspFI	CCCAGC	1 cut(s)	331
PspGI	CCWGG	3 cut(s)	52, 209, 1261
PspN4I	GGNNCC	2 cut(s)	694, 1181
PspPI	GGNCC	3 cut(s)	293, 670, 693
PspXI	VCTCGAGB	2 cut(s)	570, 651
PsrI	GAACNNNNNNTAC	2 cut(s)	81, 113
PsuI	RGATCY	1 cut(s)	781
RsaI	GTAC	3 cut(s)	351, 576, 1268
RsaNI	GTAC	3 cut(s)	350, 575, 1267
RseI	CAYNNNNRTG	3 cut(s)	146, 585, 606
SacI	GAGCTC	1 cut(s)	571
SaqAI	TTAA	7 cut(s)	102, 107, 530, 623, 633, 1104, 1140
SatI	GCNGC	3 cut(s)	240, 456, 1218
Sau3AI	GATC	3 cut(s)	57, 781, 1006
Sau96I	GGNCC	3 cut(s)	293, 670, 693
SchI	GAGTC	2 cut(s)	425, 800
ScrFI	CCNGG	3 cut(s)	54, 211, 1263
SduI	GDGCHC	1 cut(s)	571
SfcI	CTRYAG	1 cut(s)	1272
Sfr274I	CTCGAG	3 cut(s)	570, 651, 1244
SinI	GGWCC	3 cut(s)	293, 670, 693
SlaI	CTCGAG	3 cut(s)	570, 651, 1244
SmiMI	CAYNNNNRTG	3 cut(s)	146, 585, 606
SmlI	CTYRAG	4 cut(s)	438, 570, 651, 1244
SmoI	CTYRAG	4 cut(s)	438, 570, 651, 1244
SpeI	ACTAGT	1 cut(s)	374
SphI	GCATGC	1 cut(s)	179
SseBI	AGGCCT	1 cut(s)	1080
SsiI	CCGC	2 cut(s)	637, 1152
SspI	AATATT	1 cut(s)	663
SspMI	CTAG	2 cut(s)	375, 1061
SstI	GAGCTC	1 cut(s)	571
StuI	AGGCCT	1 cut(s)	1080
StyD4I	CCNGG	3 cut(s)	52, 209, 1261
StyI	CCWWGG	2 cut(s)	147, 801
TaaI	ACNGT	2 cut(s)	955, 1113
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	6 cut(s)	60, 270, 571, 652, 770, 1245
TaqII	GACCGA	1 cut(s)	749
TfiI	GAWTC	4 cut(s)	215, 343, 888, 1064
Tru1I	TTAA	7 cut(s)	102, 107, 530, 623, 633, 1104, 1140
Tru9I	TTAA	7 cut(s)	102, 107, 530, 623, 633, 1104, 1140
TscAI	CASTG	3 cut(s)	123, 981, 1090
TseFI	GTSAC	2 cut(s)	428, 1028
TseI	GCWGC	3 cut(s)	239, 455, 1217
Tsp45I	GTSAC	2 cut(s)	428, 1028
TspDTI	ATGAA	6 cut(s)	19, 25, 400, 519, 896, 1202
TspGWI	ACGGA	2 cut(s)	527, 773
TspRI	CASTG	3 cut(s)	123, 981, 1090
VpaK11BI	GGWCC	3 cut(s)	293, 670, 693
XapI	RAATTY	6 cut(s)	109, 618, 643, 1070, 1090, 1333
XceI	RCATGY	1 cut(s)	179
XhoI	CTCGAG	3 cut(s)	570, 651, 1244
XmiI	GTMKAC	1 cut(s)	546
XmnI	GAANNNNTTC	3 cut(s)	17, 492, 887
XspI	CTAG	2 cut(s)	375, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.