Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8070616.1

Orthogroup ID

OG0001930

Physical Location & Seq

Genomic Coordinates Reverse (-)

41 .. 529

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8070616.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atggataaaattcagtcgacttactttgattacattgataaccaacctgcctgtgacgatcaaagagccaaaatttcttcagagggtccaagtcttgtgtctacagcttcggaggcctcttcatcatcgcaggtagagagcagtttttgggagaaattggttgaagtggcaaagcattttgacaagaaagatctcacttcacatcagtttaagcggagagaatcaggagtacatgctttagacactcctgatgaaggtccagcagctgcaccgggtgctaatgatatgcaaaacaactcagcaggaactcacataacagtggagaacaatcttgacatgaatgaaaatgaaaatctttcctcagggcacagggattcatctatgcctgtacttgactcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

133

Amino Acids

14.53

Weight (kDa)

4.59

Isoelectric Point (pI)

51.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06680 FvH4_3g38721 FvH4_4g08410 FvH4_6g06360
prunus_persica	Prupe.1G094600_v2.0.a1 Prupe.1G094700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0403951 RchiOBHm_Chr4g0403991 RchiOBHm_Chr4g0404001 RchiOBHm_Chr4g0404021 RchiOBHm_Chr4g0404081
rosa_laevigata	RLG00000008927 RLG00000008928 RLG00000008929 RLG00000008931 RLG00000008934 RLG00000008935 RLG00000008938 RLG00000008939 RLG00000019466 RLG00000027985 RLG00000032399
rosa_multiflora	Rmu_co8070616.1_g000001 Rmu_co8395539.1_g000001 Rmu_sc0003478.1_g000001 Rmu_sc0003483.1_g000003 Rmu_sc0004781.1_g000004 Rmu_sc0005134.1_g000003 Rmu_sc0006579.1_g000019 Rmu_sc0026037.1_g000003
rosa_roxburghii	Rroxscaffold_5G00348550 Rroxscaffold_5G00348600
rosa_rugosa	Rorug04G0046400 Rorug04G0046700 Rorug04G0046700
rosa_samantha	Rh4BG115300 Rh4BG115500 Rh4CG130700 Rh4CG130800 Rh4DG115400 Rh4DG115700
rosa_wichuraiana	Rw4G009780 Rw4G009790 Rw4G009800 Rw4G009930 Rw4G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	55, 121
AccI	GTMKAC	2 cut(s)	17, 101
AciI	CCGC	1 cut(s)	214
AcsI	RAATTY	2 cut(s)	9, 72
AcuI	CTGAAG	1 cut(s)	63
AdeI	CACNNNGTG	1 cut(s)	275
AfaI	GTAC	2 cut(s)	231, 390
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	1 cut(s)	164
AluBI	AGCT	2 cut(s)	107, 266
AluI	AGCT	2 cut(s)	107, 266
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	2 cut(s)	263, 266
ApoI	RAATTY	2 cut(s)	9, 72
AspS9I	GGNCC	2 cut(s)	86, 257
AsuC2I	CCSGG	1 cut(s)	273
AvaII	GGWCC	2 cut(s)	86, 257
AxyI	CCTNAGG	1 cut(s)	361
BaeGI	GKGCMC	1 cut(s)	369
BbvI	GCAGC	2 cut(s)	253, 275
BcnI	CCSGG	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	102
BfuAI	ACCTGC	2 cut(s)	55, 121
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	2 cut(s)	264, 267
BlsI	GCNGC	2 cut(s)	265, 268
Bme1390I	CCNGG	1 cut(s)	273
Bme18I	GGWCC	2 cut(s)	86, 257
BmgT120I	GGNCC	2 cut(s)	86, 257
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	273
BpuMI	CCSGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse21I	CCTNAGG	1 cut(s)	361
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	2 cut(s)	312, 375
BseSI	GKGCMC	1 cut(s)	369
BseXI	GCAGC	2 cut(s)	253, 275
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	254
BsnI	GGCC	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	58, 190
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	2 cut(s)	311, 374
BspHI	TCATGA	1 cut(s)	398
BspLI	GGNNCC	1 cut(s)	87
BspMI	ACCTGC	2 cut(s)	55, 121
BssMI	GATC	2 cut(s)	58, 190
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	124
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstDEI	CTNAG	2 cut(s)	298, 361
BstENI	CCTNNNNNAGG	1 cut(s)	252
BstKTI	GATC	2 cut(s)	61, 193
BstMBI	GATC	2 cut(s)	58, 190
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 275
BstNSI	RCATGY	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	253, 275
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
Bsu36I	CCTNAGG	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	116
BtgZI	GCGATG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	324
BveI	ACCTGC	2 cut(s)	55, 121
CaiI	CAGNNNCTG	1 cut(s)	266
CciI	TCATGA	1 cut(s)	398
Cfr13I	GGNCC	2 cut(s)	86, 257
Csp6I	GTAC	2 cut(s)	230, 389
CviAII	CATG	3 cut(s)	233, 337, 399
CviJI	RGCY	4 cut(s)	68, 107, 116, 266
CviKI_1	RGCY	4 cut(s)	68, 107, 116, 266
CviQI	GTAC	2 cut(s)	230, 389
DdeI	CTNAG	2 cut(s)	298, 361
DpnI	GATC	2 cut(s)	60, 192
DpnII	GATC	2 cut(s)	58, 190
DraIII	CACNNNGTG	1 cut(s)	275
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco147I	AGGCCT	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	86, 257
Eco57I	CTGAAG	1 cut(s)	63
Eco81I	CCTNAGG	1 cut(s)	361
EcoNI	CCTNNNNNAGG	1 cut(s)	252
FaeI	CATG	3 cut(s)	236, 340, 402
FaiI	YATR	6 cut(s)	234, 287, 314, 338, 383, 400
FatI	CATG	3 cut(s)	232, 336, 398
FblI	GTMKAC	2 cut(s)	17, 101
Fnu4HI	GCNGC	2 cut(s)	264, 267
Fsp4HI	GCNGC	2 cut(s)	264, 267
GluI	GCNGC	2 cut(s)	264, 267
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	1 cut(s)	272
Hin1II	CATG	3 cut(s)	236, 340, 402
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	3 cut(s)	221, 374, 395
HpaII	CCGG	1 cut(s)	272
Hpy166II	GTNNAC	2 cut(s)	18, 102
Hpy188I	TCNGA	2 cut(s)	82, 112
Hpy188III	TCNNGA	4 cut(s)	225, 248, 332, 399
Hpy8I	GTNNAC	2 cut(s)	18, 102
HpyAV	CCTTC	1 cut(s)	248
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	2 cut(s)	269, 289
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 275
HpyF3I	CTNAG	2 cut(s)	298, 361
Hsp92II	CATG	3 cut(s)	236, 340, 402
Kzo9I	GATC	2 cut(s)	58, 190
Lsp1109I	GCAGC	2 cut(s)	253, 275
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	2 cut(s)	60, 192
MboI	GATC	2 cut(s)	58, 190
MboII	GAAGA	2 cut(s)	69, 111
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	3 cut(s)	9, 72, 155
MlyI	GAGTC	1 cut(s)	389
MnlI	CCTC	4 cut(s)	76, 106, 127, 370
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	317
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	113, 275
NciI	CCSGG	1 cut(s)	273
NdeII	GATC	2 cut(s)	58, 190
NlaIII	CATG	3 cut(s)	236, 340, 402
NlaIV	GGNNCC	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	53
NspI	RCATGY	1 cut(s)	236
PagI	TCATGA	1 cut(s)	398
PceI	AGGCCT	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	221, 374
PkrI	GCNGC	2 cut(s)	265, 268
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	2 cut(s)	86, 257
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	190
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	2 cut(s)	231, 390
RsaNI	GTAC	2 cut(s)	230, 389
RseI	CAYNNNNRTG	1 cut(s)	317
SalI	GTCGAC	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	2 cut(s)	264, 267
Sau3AI	GATC	2 cut(s)	58, 190
Sau96I	GGNCC	2 cut(s)	86, 257
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	1 cut(s)	369
SetI	ASST	5 cut(s)	49, 109, 135, 259, 268
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	2 cut(s)	86, 257
SmiMI	CAYNNNNRTG	1 cut(s)	317
Sse9I	AATT	3 cut(s)	9, 72, 155
SseBI	AGGCCT	1 cut(s)	116
SsiI	CCGC	1 cut(s)	214
StuI	AGGCCT	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	17
TasI	AATT	3 cut(s)	9, 72, 155
TatI	WGTACW	2 cut(s)	229, 388
TfiI	GAWTC	2 cut(s)	221, 374
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	2 cut(s)	263, 266
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	6 cut(s)	111, 267, 353, 357, 363, 366
TspRI	CASTG	1 cut(s)	324
VpaK11BI	GGWCC	2 cut(s)	86, 257
XagI	CCTNNNNNAGG	1 cut(s)	252
XapI	RAATTY	2 cut(s)	9, 72
XceI	RCATGY	1 cut(s)	236
XmiI	GTMKAC	2 cut(s)	17, 101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.