Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001477

Physical Location & Seq

Genomic Coordinates Reverse (-)

13619004 .. 13623015

Gene Structure 4012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g21650.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGCAGGATAGAGATTTGAACGAGTATAGTCCGGCTGGGTCAAGCACCAGCAAGCATGTATCTTGCAGCCATGAGTTATGTACGGCTGGTCCAAACTGTAAGGGCCCCAAGCAGCCATGCCCTTACACTATTGAATACTTATCGGAAAACACATCGAGTTCTGGGTTACTTGTGGAGGATATATTACATCTTGTAGCAGGGGGTACTGATGTATCAAACAATTCTATTCGGGCACCTGTGATCGTAGGATGTGGTATGAGGCAAAGTGGTGAATATCTGGATGGCATTGCACCTGATGGTCTTATGGGTTTAGGACTTGGAGAGATCTCAATTCCTAGTTTCCTTGCTAAAGCAGGATTGATCACAAACTCTTTCTCGATGTGTGTTGATGAGGAAGGTTCTGGGAGAATATTTTTTGGTGACCAGGGACCAAGTACTCAACAATCTACATCCTTCCTGCCCTCAAACGGAAATTATGAAACCTACATCGTTGGTGTGGAAGCATGTTGTATTGGAAATTCATGTCTTAAGCAGACAAGCTTCAGGGCGTTGGTTGATAGTGGGACATCATTTACATTTCTTCCAGAAGAAGTGTACGATAAAATTGTAGTGGAGTTTGATAAGCGAGTGAACGCGACAATCACAAGTTATGAAGGATCTCCTTGGAAGTACTGCTATAAGACCAGTTCTCAAGATTTGCTAAAAGTGCCTTCTGTCACGCTTATGTTCCTGGCAAACAACAGTTTTGTGGTTCATGATCCCATTTTTCCAATGTATGGTAATCAGGGACTTGACGGAATTTGTTTAGCCATACAGCCAGCAGATGGTGATATTGGGACGATTGGACAGAACTTCATGACCGGATACCGGACAGTATTTGATAGGGAGAATATGAAGCTAGGTTGGTCTCACTCAAAATGTCAAGATCTTGGTGATGCTAAGAGTATGCCCCTAACACCTTCTCCAAAGGGCACCCCGCCAATTCCATTGCCAACGACTGAGCAGCAGAGCACTCCTGGTGGGTTTGCTCCTGCTGTTGCTGGAAGAGCTCCGCCAAAAGCATCAGCTGCATCTAGTCGGTCAAGGTTTTGTTTGTTGAGATGGTTGGCACTACTGGTATTATTTCATATCGTCTTTGTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

382

Amino Acids

40.93

Weight (kDa)

5.2

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	117 - 299	1.3e-36	Xylanase inhibitor N-terminal
Asp	PF00026	117 - 389	7.4e-17	Eukaryotic aspartyl protease
TAXi_C	PF14541	336 - 409	2.2e-08	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10080
fragaria_vesca	FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650
malus_domestica	MD01G1024100.v1.1 MD15G1362800.v1.1
prunus_persica	Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.6G179100_v2.0.a1
pyrus_communis	pycom01g05180 pycom15g32510
rosa_chinensis	RchiOBHm_Chr1g0350111 RchiOBHm_Chr2g0115521 RchiOBHm_Chr2g0129991
rosa_laevigata	RLG00000005996 RLG00000006248 RLG00000015274 RLG00000018190 RLG00000030771
rosa_multiflora	Rmu_sc0005625.1_g000012 Rmu_sc0007210.1_g000001 Rmu_sc0009900.1_g000009 Rmu_sc0021224.1_g000001 Rmu_sc0039462.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064010 Rroxscaffold_1G00064020 Rroxscaffold_2G00123530 Rroxscaffold_2G00128130 Rroxscaffold_2G00129010 Rroxscaffold_3G00229700 Rroxscaffold_5G00344250 Rroxscaffold_7G00197080 Rroxscaffold_7G00197100 Rroxscaffold_7G00217690
rosa_rugosa	Rorug02G0197300 Rorug02G0197300 Rorug02G0197300
rosa_samantha	Rh1CG101200 Rh1CG101300 Rh2AG254900 Rh2AG342200 Rh2BG265700 Rh2CG260100 Rh2DG263000 Rh2DG368300 Rh2DG576100
rosa_wichuraiana	Rw2G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	232, 971
AccB7I	CCANNNNNTGG	2 cut(s)	776, 824
AccII	CGCG	1 cut(s)	635
AciI	CCGC	2 cut(s)	977, 1052
AclWI	GGATC	2 cut(s)	664, 752
AcsI	RAATTY	2 cut(s)	517, 798
AcuI	CTGAAG	1 cut(s)	526
AfaI	GTAC	5 cut(s)	82, 205, 436, 596, 671
AfiI	CCNNNNNNNGG	4 cut(s)	467, 776, 824, 867
AflII	CTTAAG	1 cut(s)	527
AgsI	TTSAA	2 cut(s)	19, 134
AjnI	CCWGG	3 cut(s)	423, 729, 1015
AluBI	AGCT	4 cut(s)	540, 898, 1049, 1067
AluI	AGCT	4 cut(s)	540, 898, 1049, 1067
Alw21I	GWGCWC	2 cut(s)	1013, 1051
Alw26I	GTCTC	1 cut(s)	912
AlwI	GGATC	2 cut(s)	664, 752
AoxI	GGCC	1 cut(s)	103
ApaI	GGGCCC	1 cut(s)	107
ApeKI	GCWGC	4 cut(s)	66, 112, 1003, 1067
ApoI	RAATTY	2 cut(s)	517, 798
AspS9I	GGNCC	4 cut(s)	89, 103, 104, 428
AsuHPI	GGTGA	4 cut(s)	281, 431, 839, 944
AvaII	GGWCC	2 cut(s)	89, 428
BaeGI	GKGCMC	3 cut(s)	107, 235, 974
BaeI	ACNNNNGTAYC	4 cut(s)	195, 195, 228, 228
BanI	GGYRCC	2 cut(s)	232, 971
BanII	GRGCYC	2 cut(s)	107, 1051
BbsI	GAAGAC	1 cut(s)	1132
Bbv12I	GWGCWC	2 cut(s)	1013, 1051
BbvI	GCAGC	4 cut(s)	78, 124, 1015, 1054
BccI	CCATC	4 cut(s)	275, 290, 818, 1095
BceAI	ACGGC	1 cut(s)	99
BciT130I	CCWGG	3 cut(s)	425, 731, 1017
BciVI	GTATCC	1 cut(s)	857
BclI	TGATCA	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	912
BfaI	CTAG	4 cut(s)	336, 899, 1074, 1144
BfrI	CTTAAG	1 cut(s)	527
BfuI	GTATCC	1 cut(s)	857
BglII	AGATCT	2 cut(s)	324, 925
BisI	GCNGC	4 cut(s)	67, 113, 1004, 1068
BlsI	GCNGC	4 cut(s)	68, 114, 1005, 1069
BmcAI	AGTACT	2 cut(s)	436, 671
Bme1390I	CCNGG	3 cut(s)	425, 731, 1017
Bme18I	GGWCC	2 cut(s)	89, 428
BmgT120I	GGNCC	4 cut(s)	89, 103, 104, 428
BmiI	GGNNCC	5 cut(s)	105, 106, 234, 429, 973
BmrFI	CCNGG	3 cut(s)	425, 731, 1017
BmsI	GCATC	3 cut(s)	925, 1070, 1079
BpiI	GAAGAC	1 cut(s)	1132
BpuEI	CTTGAG	1 cut(s)	675
BsaI	GGTCTC	1 cut(s)	912
BsaJI	CCNNGG	2 cut(s)	424, 662
BsaWI	WCCGGW	2 cut(s)	860, 867
BsaXI	ACNNNNNCTCC	2 cut(s)	946, 976
Bsc4I	CCNNNNNNNGG	4 cut(s)	467, 776, 824, 867
Bse1I	ACTGG	2 cut(s)	684, 1119
Bse3DI	GCAATG	2 cut(s)	285, 986
BseBI	CCWGG	3 cut(s)	425, 731, 1017
BseDI	CCNNGG	2 cut(s)	424, 662
BseGI	GGATG	3 cut(s)	254, 286, 449
BseLI	CCNNNNNNNGG	4 cut(s)	467, 776, 824, 867
BseMI	GCAATG	2 cut(s)	285, 986
BseMII	CTCAG	1 cut(s)	990
BseNI	ACTGG	2 cut(s)	684, 1119
BseSI	GKGCMC	3 cut(s)	107, 235, 974
BseXI	GCAGC	4 cut(s)	78, 124, 1015, 1054
BseYI	CCCAGC	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	635
BshFI	GGCC	1 cut(s)	105
BshNI	GGYRCC	2 cut(s)	232, 971
BsiHKAI	GWGCWC	2 cut(s)	1013, 1051
BsiSI	CCGG	3 cut(s)	32, 861, 868
BslFI	GGGAC	4 cut(s)	441, 577, 801, 850
BslI	CCNNNNNNNGG	4 cut(s)	467, 776, 824, 867
BsmAI	GTCTC	1 cut(s)	912
BsmFI	GGGAC	4 cut(s)	441, 577, 801, 850
BsnI	GGCC	1 cut(s)	105
Bso31I	GGTCTC	1 cut(s)	912
Bsp120I	GGGCCC	1 cut(s)	103
Bsp1286I	GDGCHC	5 cut(s)	107, 235, 974, 1013, 1051
Bsp143I	GATC	6 cut(s)	240, 324, 360, 656, 757, 925
BspACI	CCGC	2 cut(s)	977, 1052
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	1 cut(s)	991
BspFNI	CGCG	1 cut(s)	635
BspHI	TCATGA	2 cut(s)	754, 855
BspLI	GGNNCC	5 cut(s)	105, 106, 234, 429, 973
BspPI	GGATC	2 cut(s)	664, 752
BspQI	GCTCTTC	1 cut(s)	1039
BspT107I	GGYRCC	2 cut(s)	232, 971
BspTI	CTTAAG	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	912
BsrDI	GCAATG	2 cut(s)	285, 986
BsrI	ACTGG	2 cut(s)	684, 1119
BssECI	CCNNGG	2 cut(s)	424, 662
BssMI	GATC	6 cut(s)	240, 324, 360, 656, 757, 925
BssT1I	CCWWGG	1 cut(s)	662
Bst2UI	CCWGG	3 cut(s)	425, 731, 1017
Bst4CI	ACNGT	3 cut(s)	98, 743, 874
Bst6I	CTCTTC	1 cut(s)	1039
BstAFI	CTTAAG	1 cut(s)	527
BstAPI	GCANNNNNTGC	1 cut(s)	1067
BstC8I	GCNNGC	2 cut(s)	53, 819
BstDEI	CTNAG	2 cut(s)	939, 999
BstEII	GGTNACC	1 cut(s)	419
BstF5I	GGATG	3 cut(s)	254, 286, 449
BstFNI	CGCG	1 cut(s)	635
BstKTI	GATC	6 cut(s)	243, 327, 363, 659, 760, 928
BstMAI	GTCTC	1 cut(s)	912
BstMBI	GATC	6 cut(s)	240, 324, 360, 656, 757, 925
BstMWI	GCNNNNNNNGC	3 cut(s)	706, 1046, 1067
BstNI	CCWGG	3 cut(s)	425, 731, 1017
BstNSI	RCATGY	2 cut(s)	59, 507
BstPI	GGTNACC	1 cut(s)	419
BstSCI	CCNGG	3 cut(s)	423, 729, 1015
BstSLI	GKGCMC	3 cut(s)	107, 235, 974
BstUI	CGCG	1 cut(s)	635
BstV1I	GCAGC	4 cut(s)	78, 124, 1015, 1054
BstV2I	GAAGAC	1 cut(s)	1132
BstX2I	RGATCY	3 cut(s)	324, 656, 925
BstYI	RGATCY	3 cut(s)	324, 656, 925
BsuI	GTATCC	1 cut(s)	857
BsuRI	GGCC	1 cut(s)	105
BtsCI	GGATG	3 cut(s)	254, 286, 449
Cac8I	GCNNGC	2 cut(s)	53, 819
CciI	TCATGA	2 cut(s)	754, 855
Cfr13I	GGNCC	4 cut(s)	89, 103, 104, 428
Csp6I	GTAC	5 cut(s)	81, 204, 435, 595, 670
CviAII	CATG	7 cut(s)	56, 71, 117, 504, 522, 755, 856
CviQI	GTAC	5 cut(s)	81, 204, 435, 595, 670
DdeI	CTNAG	2 cut(s)	939, 999
DpnI	GATC	6 cut(s)	242, 326, 362, 658, 759, 927
DpnII	GATC	6 cut(s)	240, 324, 360, 656, 757, 925
Eam1104I	CTCTTC	1 cut(s)	1039
EarI	CTCTTC	1 cut(s)	1039
EciI	GGCGGA	1 cut(s)	1041
Ecl136II	GAGCTC	1 cut(s)	1049
Eco130I	CCWWGG	1 cut(s)	662
Eco24I	GRGCYC	2 cut(s)	107, 1051
Eco31I	GGTCTC	1 cut(s)	912
Eco47I	GGWCC	2 cut(s)	89, 428
Eco53kI	GAGCTC	1 cut(s)	1049
Eco57I	CTGAAG	1 cut(s)	526
Eco91I	GGTNACC	1 cut(s)	419
EcoICRI	GAGCTC	1 cut(s)	1049
EcoO109I	RGGNCCY	2 cut(s)	103, 104
EcoO65I	GGTNACC	1 cut(s)	419
EcoRII	CCWGG	3 cut(s)	423, 729, 1015
EcoT14I	CCWWGG	1 cut(s)	662
EcoT38I	GRGCYC	2 cut(s)	107, 1051
ErhI	CCWWGG	1 cut(s)	662
FaeI	CATG	7 cut(s)	59, 74, 120, 507, 525, 758, 859
FaqI	GGGAC	4 cut(s)	441, 577, 801, 850
FatI	CATG	7 cut(s)	55, 70, 116, 503, 521, 754, 855
FauI	CCCGC	1 cut(s)	984
FbaI	TGATCA	1 cut(s)	360
Fnu4HI	GCNGC	4 cut(s)	67, 113, 1004, 1068
FokI	GGATG	3 cut(s)	261, 293, 436
FriOI	GRGCYC	2 cut(s)	107, 1051
Fsp4HI	GCNGC	4 cut(s)	67, 113, 1004, 1068
FspBI	CTAG	4 cut(s)	336, 899, 1074, 1144
GluI	GCNGC	4 cut(s)	67, 113, 1004, 1068
GsaI	CCCAGC	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	3 cut(s)	32, 861, 868
Hin1II	CATG	7 cut(s)	59, 74, 120, 507, 525, 758, 859
HindIII	AAGCTT	1 cut(s)	538
HpaII	CCGG	3 cut(s)	32, 861, 868
HphI	GGTGA	4 cut(s)	281, 431, 839, 944
Hpy166II	GTNNAC	2 cut(s)	595, 631
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	7 cut(s)	278, 376, 584, 692, 755, 856, 923
Hpy8I	GTNNAC	2 cut(s)	595, 631
HpyAV	CCTTC	5 cut(s)	389, 463, 647, 720, 969
HpyCH4III	ACNGT	3 cut(s)	98, 743, 874
HpyCH4V	TGCA	4 cut(s)	4, 66, 290, 1070
HpyF10VI	GCNNNNNNNGC	3 cut(s)	706, 1046, 1067
HpyF3I	CTNAG	2 cut(s)	939, 999
Hsp92II	CATG	7 cut(s)	59, 74, 120, 507, 525, 758, 859
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	6 cut(s)	240, 324, 360, 656, 757, 925
LguI	GCTCTTC	1 cut(s)	1039
LmnI	GCTCC	2 cut(s)	1033, 1054
Lsp1109I	GCAGC	4 cut(s)	78, 124, 1015, 1054
LweI	GCATC	3 cut(s)	925, 1070, 1079
MaeI	CTAG	4 cut(s)	336, 899, 1074, 1144
MaeIII	GTNAC	3 cut(s)	165, 419, 715
MalI	GATC	6 cut(s)	242, 326, 362, 658, 759, 927
MboI	GATC	6 cut(s)	240, 324, 360, 656, 757, 925
MboII	GAAGA	4 cut(s)	572, 599, 1056, 1132
MflI	RGATCY	3 cut(s)	324, 656, 925
MhlI	GDGCHC	5 cut(s)	107, 235, 974, 1013, 1051
MluCI	AATT	7 cut(s)	220, 330, 472, 517, 603, 798, 981
MnlI	CCTC	4 cut(s)	169, 252, 385, 472
MseI	TTAA	1 cut(s)	528
MslI	CAYNNNNRTG	1 cut(s)	722
MspA1I	CMGCKG	1 cut(s)	1067
MspCI	CTTAAG	1 cut(s)	527
MspI	CCGG	3 cut(s)	32, 861, 868
MspR9I	CCNGG	3 cut(s)	425, 731, 1017
MvaI	CCWGG	3 cut(s)	425, 731, 1017
MvnI	CGCG	1 cut(s)	635
MwoI	GCNNNNNNNGC	3 cut(s)	706, 1046, 1067
NdeII	GATC	6 cut(s)	240, 324, 360, 656, 757, 925
NlaIII	CATG	7 cut(s)	59, 74, 120, 507, 525, 758, 859
NlaIV	GGNNCC	5 cut(s)	105, 106, 234, 429, 973
NmuCI	GTSAC	2 cut(s)	419, 715
NspI	RCATGY	2 cut(s)	59, 507
PagI	TCATGA	2 cut(s)	754, 855
PciSI	GCTCTTC	1 cut(s)	1039
PflMI	CCANNNNNTGG	2 cut(s)	776, 824
PkrI	GCNGC	4 cut(s)	68, 114, 1005, 1069
Psp124BI	GAGCTC	1 cut(s)	1051
Psp6I	CCWGG	3 cut(s)	423, 729, 1015
PspEI	GGTNACC	1 cut(s)	419
PspFI	CCCAGC	1 cut(s)	35
PspGI	CCWGG	3 cut(s)	423, 729, 1015
PspN4I	GGNNCC	5 cut(s)	105, 106, 234, 429, 973
PspOMI	GGGCCC	1 cut(s)	103
PspPI	GGNCC	4 cut(s)	89, 103, 104, 428
PsuI	RGATCY	3 cut(s)	324, 656, 925
PvuII	CAGCTG	1 cut(s)	1067
RsaI	GTAC	5 cut(s)	82, 205, 436, 596, 671
RsaNI	GTAC	5 cut(s)	81, 204, 435, 595, 670
RseI	CAYNNNNRTG	1 cut(s)	722
SacI	GAGCTC	1 cut(s)	1051
SapI	GCTCTTC	1 cut(s)	1039
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	4 cut(s)	67, 113, 1004, 1068
Sau3AI	GATC	6 cut(s)	240, 324, 360, 656, 757, 925
Sau96I	GGNCC	4 cut(s)	89, 103, 104, 428
ScaI	AGTACT	2 cut(s)	436, 671
ScrFI	CCNGG	3 cut(s)	425, 731, 1017
SduI	GDGCHC	5 cut(s)	107, 235, 974, 1013, 1051
SfaNI	GCATC	3 cut(s)	925, 1070, 1079
SinI	GGWCC	2 cut(s)	89, 428
SmiMI	CAYNNNNRTG	1 cut(s)	722
SmlI	CTYRAG	2 cut(s)	527, 690
SmoI	CTYRAG	2 cut(s)	527, 690
Sse9I	AATT	7 cut(s)	220, 330, 472, 517, 603, 798, 981
SsiI	CCGC	2 cut(s)	977, 1052
SspI	AATATT	1 cut(s)	411
SspMI	CTAG	4 cut(s)	336, 899, 1074, 1144
SstI	GAGCTC	1 cut(s)	1051
StyD4I	CCNGG	3 cut(s)	423, 729, 1015
StyI	CCWWGG	1 cut(s)	662
TaaI	ACNGT	3 cut(s)	98, 743, 874
TaqI	TCGA	2 cut(s)	155, 377
TaqII	GACCGA	1 cut(s)	1068
TasI	AATT	7 cut(s)	220, 330, 472, 517, 603, 798, 981
TatI	WGTACW	2 cut(s)	434, 669
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TseFI	GTSAC	2 cut(s)	419, 715
TseI	GCWGC	4 cut(s)	66, 112, 1003, 1067
Tsp45I	GTSAC	2 cut(s)	419, 715
TspDTI	ATGAA	7 cut(s)	492, 510, 666, 743, 844, 908, 1115
TspGWI	ACGGA	2 cut(s)	483, 810
Van91I	CCANNNNNTGG	2 cut(s)	776, 824
Vha464I	CTTAAG	1 cut(s)	527
VpaK11BI	GGWCC	2 cut(s)	89, 428
XapI	RAATTY	2 cut(s)	517, 798
XceI	RCATGY	2 cut(s)	59, 507
XspI	CTAG	4 cut(s)	336, 899, 1074, 1144
ZrmI	AGTACT	2 cut(s)	436, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.