Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001477

Physical Location & Seq

Genomic Coordinates Reverse (-)

68222688 .. 68223068

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00217690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCGGCTCGTAGATCTCTCGCTCTTTCTCCTTCCCCTACACTCTCTCCTCCTCCGTACAGCATCAACGATTACGCTCTCCCCGCGCCTCATACACCGCTTCTCCGACGAGGCCAAGGCTCTCGAGGCCTCCCACAAGACCGGCGACGCCAAATGGCTCGGTCGGTGGCCACGAAGAACTCTATGGACTACTATCACCTCTTCGCCGGCACCGACTTCCGGTGCCGGAAGATGAAGCTCGGCACTTTTTGTCATCGTTCCGGTTCCTCTTCCCCTCGAAGGCAACACGGCGTCGTTGGCAATGACTTTGGCTGGTTGCATTATACGTGGACTGTTATATGGATGCCGAATGTTTCGTTTCTGGTGGAGGAAGAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

126

Amino Acids

14.39

Weight (kDa)

10.62

Isoelectric Point (pI)

96.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10080
fragaria_vesca	FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650
malus_domestica	MD01G1024100.v1.1 MD15G1362800.v1.1
prunus_persica	Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.6G179100_v2.0.a1
pyrus_communis	pycom01g05180 pycom15g32510
rosa_chinensis	RchiOBHm_Chr1g0350111 RchiOBHm_Chr2g0115521 RchiOBHm_Chr2g0129991
rosa_laevigata	RLG00000005996 RLG00000006248 RLG00000015274 RLG00000018190 RLG00000030771
rosa_multiflora	Rmu_sc0005625.1_g000012 Rmu_sc0007210.1_g000001 Rmu_sc0009900.1_g000009 Rmu_sc0021224.1_g000001 Rmu_sc0039462.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064010 Rroxscaffold_1G00064020 Rroxscaffold_2G00123530 Rroxscaffold_2G00128130 Rroxscaffold_2G00129010 Rroxscaffold_3G00229700 Rroxscaffold_5G00344250 Rroxscaffold_7G00197080 Rroxscaffold_7G00197100 Rroxscaffold_7G00217690
rosa_rugosa	Rorug02G0197300 Rorug02G0197300 Rorug02G0197300
rosa_samantha	Rh1CG101200 Rh1CG101300 Rh2AG254900 Rh2AG342200 Rh2BG265700 Rh2CG260100 Rh2DG263000 Rh2DG368300 Rh2DG576100
rosa_wichuraiana	Rw2G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	209, 222
AccII	CGCG	1 cut(s)	86
AciI	CCGC	3 cut(s)	5, 84, 98
AcoI	YGGCCR	1 cut(s)	168
AcyI	GRCGYC	2 cut(s)	148, 291
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	219, 279
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
Ama87I	CYCGRG	1 cut(s)	123
AoxI	GGCC	3 cut(s)	112, 127, 168
AspLEI	GCGC	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	123
BalI	TGGCCA	1 cut(s)	170
BanI	GGYRCC	2 cut(s)	209, 222
BceAI	ACGGC	1 cut(s)	304
BglII	AGATCT	1 cut(s)	14
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmeT110I	CYCGRG	1 cut(s)	123
BmiI	GGNNCC	3 cut(s)	211, 224, 265
BmsI	GCATC	2 cut(s)	72, 333
BsaAI	YACGTR	1 cut(s)	327
BsaHI	GRCGYC	2 cut(s)	148, 291
BsaJI	CCNNGG	1 cut(s)	115
BsaWI	WCCGGW	2 cut(s)	219, 260
BsaXI	ACNNNNNCTCC	4 cut(s)	31, 61, 87, 117
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 279
Bse118I	RCCGGY	2 cut(s)	141, 206
Bse3DI	GCAATG	1 cut(s)	307
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	2 cut(s)	219, 279
BseMI	GCAATG	1 cut(s)	307
BseRI	GAGGAG	2 cut(s)	39, 42
Bsh1236I	CGCG	1 cut(s)	86
Bsh1285I	CGRYCG	1 cut(s)	164
BshFI	GGCC	3 cut(s)	114, 129, 170
BshNI	GGYRCC	2 cut(s)	209, 222
BsiEI	CGRYCG	1 cut(s)	164
BsiHKCI	CYCGRG	1 cut(s)	123
BsiSI	CCGG	5 cut(s)	142, 207, 220, 226, 261
BslI	CCNNNNNNNGG	2 cut(s)	219, 279
BsnI	GGCC	3 cut(s)	114, 129, 170
BsoBI	CYCGRG	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	14
BspACI	CCGC	3 cut(s)	5, 84, 98
BspANI	GGCC	3 cut(s)	114, 129, 170
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	3 cut(s)	211, 224, 265
BspT107I	GGYRCC	2 cut(s)	209, 222
BsrDI	GCAATG	1 cut(s)	307
BsrFI	RCCGGY	2 cut(s)	141, 206
BssAI	RCCGGY	2 cut(s)	141, 206
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	1 cut(s)	14
BssNI	GRCGYC	2 cut(s)	148, 291
BssT1I	CCWWGG	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	3 cut(s)	206, 274, 366
BstACI	GRCGYC	2 cut(s)	148, 291
BstBAI	YACGTR	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	208
BstF5I	GGATG	1 cut(s)	348
BstFNI	CGCG	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
BstMCI	CGRYCG	1 cut(s)	164
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 126, 297
BstUI	CGCG	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
BsuRI	GGCC	3 cut(s)	114, 129, 170
BtsCI	GGATG	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	208
CfoI	GCGC	1 cut(s)	88
Cfr10I	RCCGGY	2 cut(s)	141, 206
CseI	GACGC	2 cut(s)	156, 280
Csp6I	GTAC	1 cut(s)	58
CviJI	RGCY	8 cut(s)	8, 114, 120, 129, 158, 170, 238, 312
CviKI_1	RGCY	8 cut(s)	8, 114, 120, 129, 158, 170, 238, 312
CviQI	GTAC	1 cut(s)	58
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	3 cut(s)	206, 274, 366
EarI	CTCTTC	3 cut(s)	206, 274, 366
Eco130I	CCWWGG	1 cut(s)	115
Eco147I	AGGCCT	1 cut(s)	129
Eco88I	CYCGRG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaiI	YATR	5 cut(s)	93, 185, 324, 338, 340
FauI	CCCGC	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	355
Fsp4HI	GCNGC	1 cut(s)	6
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	3 cut(s)	114, 129, 170
HapII	CCGG	5 cut(s)	142, 207, 220, 226, 261
HgaI	GACGC	2 cut(s)	156, 280
HhaI	GCGC	1 cut(s)	88
Hin1I	GRCGYC	2 cut(s)	148, 291
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HpaII	CCGG	5 cut(s)	142, 207, 220, 226, 261
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	1 cut(s)	107
Hpy188III	TCNNGA	1 cut(s)	123
Hpy8I	GTNNAC	1 cut(s)	330
Hpy99I	CGWCG	3 cut(s)	111, 150, 296
HpyAV	CCTTC	2 cut(s)	42, 273
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	1 cut(s)	326
HpyCH4V	TGCA	1 cut(s)	319
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 126, 297
HpySE526I	ACGT	1 cut(s)	326
Hsp92I	GRCGYC	2 cut(s)	148, 291
HspAI	GCGC	1 cut(s)	86
KroI	GCCGGC	1 cut(s)	206
KroNI	GCCGGC	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	14
LpnPI	CCDG	7 cut(s)	155, 220, 233, 239, 274, 298, 347
LweI	GCATC	2 cut(s)	72, 333
MaeII	ACGT	1 cut(s)	326
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	4 cut(s)	187, 193, 241, 261
MflI	RGATCY	1 cut(s)	14
MlsI	TGGCCA	1 cut(s)	170
MluNI	TGGCCA	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	130
Mox20I	TGGCCA	1 cut(s)	170
MroNI	GCCGGC	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	170
Msp20I	TGGCCA	1 cut(s)	170
MspI	CCGG	5 cut(s)	142, 207, 220, 226, 261
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	3 cut(s)	83, 126, 297
NaeI	GCCGGC	1 cut(s)	208
NdeII	GATC	1 cut(s)	14
NgoMIV	GCCGGC	1 cut(s)	206
NlaIV	GGNNCC	3 cut(s)	211, 224, 265
NmeAIII	GCCGAG	1 cut(s)	219
PaeR7I	CTCGAG	1 cut(s)	123
PceI	AGGCCT	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	2 cut(s)	170, 210
PdiI	GCCGGC	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	7
Ppu21I	YACGTR	1 cut(s)	327
PspN4I	GGNNCC	3 cut(s)	211, 224, 265
PsuI	RGATCY	1 cut(s)	14
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	14
SetI	ASST	3 cut(s)	201, 240, 329
SfaNI	GCATC	2 cut(s)	72, 333
Sfr274I	CTCGAG	1 cut(s)	123
SlaI	CTCGAG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
SseBI	AGGCCT	1 cut(s)	129
SsiI	CCGC	3 cut(s)	5, 84, 98
StuI	AGGCCT	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	1 cut(s)	329
TaqI	TCGA	2 cut(s)	124, 277
TaqII	GACCGA	1 cut(s)	150
TauI	GCSGC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	248
TspGWI	ACGGA	1 cut(s)	45
XhoI	CTCGAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.