Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001477

Physical Location & Seq

Genomic Coordinates Forward (+)

3382736 .. 3384011

Gene Structure 1276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005996

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAGATCGGACGGAGAGGAGAGGTTTTATAGTAGAGTTGTTGGGAGTAGGAGATTAAAGCTCTCGGCCTTATCCCTTGTCCTTTGCTGTCCGGAGCGTGCGACGGTATACGTGGCGGAGTACAACTCGCCTCAGCTCGACACGTGTCGGGCTCTCCATGCTTCGTTGACAGCTTGGCGACTAGGCCCTCTGAAAGCGTGTGTGTGTGTGTCAGACTGTGAGAGTGTGTCTCGTTTGACCCCGATAAGCGGATATTTTCCGACAGACGAAGCCAAGGCTCTCAAGGCCTCCCGCAGCACCGGTGACGCCAAATGGCTCAGTCGGTGGCCGCGGAGAAACTCAATGGACTACTACCACCTCCTCGTCAACACTGACTTCCACCGCCAGAAGATGAAGCTCGCCGCCATCGCCTCTTTTCCTCATCATCAGTTCCAGTTCCTTTTCCCCTCTGAAAGTAGCAACACGGCATCGTTTGGCAATGACTTCGGCTGGTTGCATTATACATGGATTGATAAAGGGACGCTAAATATTTGGTTTTTGCCACAATGCGGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

186

Amino Acids

21.13

Weight (kDa)

9.02

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10080
fragaria_vesca	FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650
malus_domestica	MD01G1024100.v1.1 MD15G1362800.v1.1
prunus_persica	Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.6G179100_v2.0.a1
pyrus_communis	pycom01g05180 pycom15g32510
rosa_chinensis	RchiOBHm_Chr1g0350111 RchiOBHm_Chr2g0115521 RchiOBHm_Chr2g0129991
rosa_laevigata	RLG00000005996 RLG00000006248 RLG00000015274 RLG00000018190 RLG00000030771
rosa_multiflora	Rmu_sc0005625.1_g000012 Rmu_sc0007210.1_g000001 Rmu_sc0009900.1_g000009 Rmu_sc0021224.1_g000001 Rmu_sc0039462.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064010 Rroxscaffold_1G00064020 Rroxscaffold_2G00123530 Rroxscaffold_2G00128130 Rroxscaffold_2G00129010 Rroxscaffold_3G00229700 Rroxscaffold_5G00344250 Rroxscaffold_7G00197080 Rroxscaffold_7G00197100 Rroxscaffold_7G00217690
rosa_rugosa	Rorug02G0197300 Rorug02G0197300 Rorug02G0197300
rosa_samantha	Rh1CG101200 Rh1CG101300 Rh2AG254900 Rh2AG342200 Rh2BG265700 Rh2CG260100 Rh2DG263000 Rh2DG368300 Rh2DG576100
rosa_wichuraiana	Rw2G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	108
AccII	CGCG	1 cut(s)	331
AccIII	TCCGGA	1 cut(s)	91
AciI	CCGC	8 cut(s)	116, 249, 292, 329, 331, 382, 402, 549
AcoI	YGGCCR	1 cut(s)	326
AcvI	CACGTG	1 cut(s)	144
AcyI	GRCGYC	1 cut(s)	306
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	248, 548
AflIII	ACRYGT	2 cut(s)	141, 143
AgeI	ACCGGT	1 cut(s)	299
AluBI	AGCT	4 cut(s)	61, 136, 173, 397
AluI	AGCT	4 cut(s)	61, 136, 173, 397
Alw26I	GTCTC	1 cut(s)	234
Aor13HI	TCCGGA	1 cut(s)	91
AoxI	GGCC	4 cut(s)	66, 184, 285, 326
ApeKI	GCWGC	1 cut(s)	294
AsiGI	ACCGGT	1 cut(s)	299
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	154
BbrPI	CACGTG	1 cut(s)	144
BbvCI	CCTCAGC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	1 cut(s)	413
BceAI	ACGGC	1 cut(s)	480
BcgI	CGANNNNNNTGC	2 cut(s)	466, 500
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	1 cut(s)	182
BisI	GCNGC	4 cut(s)	295, 329, 402, 550
BlsI	GCNGC	4 cut(s)	296, 330, 403, 551
BmgT120I	GGNCC	1 cut(s)	185
BmsI	GCATC	1 cut(s)	476
BoxI	GACNNNNGTC	1 cut(s)	144
BplI	GAGNNNNNCTC	4 cut(s)	110, 142, 214, 246
Bpu10I	CCTNAGC	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	266
BsaAI	YACGTR	2 cut(s)	112, 144
BsaHI	GRCGYC	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	273, 329
BsaWI	WCCGGW	2 cut(s)	91, 299
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 548
Bse118I	RCCGGY	1 cut(s)	299
Bse1I	ACTGG	1 cut(s)	433
Bse3DI	GCAATG	1 cut(s)	484
BseAI	TCCGGA	1 cut(s)	91
BseDI	CCNNGG	2 cut(s)	273, 329
BseLI	CCNNNNNNNGG	2 cut(s)	248, 548
BseMI	GCAATG	1 cut(s)	484
BseMII	CTCAG	2 cut(s)	146, 331
BseNI	ACTGG	1 cut(s)	433
BseRI	GAGGAG	2 cut(s)	32, 350
BseXI	GCAGC	1 cut(s)	306
Bsh1236I	CGCG	1 cut(s)	331
BshFI	GGCC	4 cut(s)	68, 186, 287, 328
BshTI	ACCGGT	1 cut(s)	299
BsiSI	CCGG	2 cut(s)	92, 300
BslFI	GGGAC	1 cut(s)	532
BslI	CCNNNNNNNGG	2 cut(s)	248, 548
BsmAI	GTCTC	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	532
BsnI	GGCC	4 cut(s)	68, 186, 287, 328
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp13I	TCCGGA	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	5
BspACI	CCGC	8 cut(s)	116, 249, 292, 329, 331, 382, 402, 549
BspANI	GGCC	4 cut(s)	68, 186, 287, 328
BspCNI	CTCAG	2 cut(s)	145, 330
BspEI	TCCGGA	1 cut(s)	91
BspFNI	CGCG	1 cut(s)	331
BsrDI	GCAATG	1 cut(s)	484
BsrFI	RCCGGY	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	433
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	2 cut(s)	273, 329
BssMI	GATC	1 cut(s)	5
BssNAI	GTATAC	1 cut(s)	109
BssNI	GRCGYC	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	273
Bst1107I	GTATAC	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	106, 218
BstACI	GRCGYC	1 cut(s)	306
BstBAI	YACGTR	2 cut(s)	112, 144
BstC8I	GCNNGC	2 cut(s)	99, 399
BstDEI	CTNAG	2 cut(s)	132, 317
BstDSI	CCRYGG	1 cut(s)	329
BstFNI	CGCG	1 cut(s)	331
BstKTI	GATC	1 cut(s)	8
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	5
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 284, 407
BstPAI	GACNNNNGTC	1 cut(s)	144
BstUI	CGCG	1 cut(s)	331
BstV1I	GCAGC	1 cut(s)	306
BstZ17I	GTATAC	1 cut(s)	109
BsuRI	GGCC	4 cut(s)	68, 186, 287, 328
BtgI	CCRYGG	1 cut(s)	329
BtgZI	GCGATG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	2 cut(s)	99, 399
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	185
Cfr42I	CCGCGG	1 cut(s)	332
CseI	GACGC	2 cut(s)	314, 529
Csp6I	GTAC	1 cut(s)	121
CspAI	ACCGGT	1 cut(s)	299
CviAII	CATG	2 cut(s)	158, 504
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	2 cut(s)	132, 317
DpnI	GATC	1 cut(s)	7
DpnII	GATC	1 cut(s)	5
EaeI	YGGCCR	1 cut(s)	326
EciI	GGCGGA	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	273
Eco147I	AGGCCT	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	154
Eco72I	CACGTG	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	2 cut(s)	161, 507
FaiI	YATR	5 cut(s)	30, 109, 159, 501, 505
FaqI	GGGAC	1 cut(s)	532
FatI	CATG	2 cut(s)	157, 503
FauI	CCCGC	1 cut(s)	299
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	4 cut(s)	295, 329, 402, 550
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	4 cut(s)	295, 329, 402, 550
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	4 cut(s)	295, 329, 402, 550
HaeIII	GGCC	4 cut(s)	68, 186, 287, 328
HapII	CCGG	2 cut(s)	92, 300
HgaI	GACGC	2 cut(s)	314, 529
Hin1I	GRCGYC	1 cut(s)	306
Hin1II	CATG	2 cut(s)	161, 507
HincII	GTYRAC	2 cut(s)	168, 367
HindII	GTYRAC	2 cut(s)	168, 367
HpaII	CCGG	2 cut(s)	92, 300
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	3 cut(s)	109, 168, 367
Hpy188I	TCNGA	5 cut(s)	10, 192, 214, 261, 451
Hpy188III	TCNNGA	1 cut(s)	92
Hpy8I	GTNNAC	3 cut(s)	109, 168, 367
Hpy99I	CGWCG	1 cut(s)	106
HpyCH4III	ACNGT	2 cut(s)	106, 218
HpyCH4IV	ACGT	2 cut(s)	111, 143
HpyCH4V	TGCA	1 cut(s)	496
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 284, 407
HpyF3I	CTNAG	2 cut(s)	132, 317
HpySE526I	ACGT	2 cut(s)	111, 143
Hsp92I	GRCGYC	1 cut(s)	306
Hsp92II	CATG	2 cut(s)	161, 507
Kpn2I	TCCGGA	1 cut(s)	91
KspI	CCGCGG	1 cut(s)	332
Kzo9I	GATC	1 cut(s)	5
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	5 cut(s)	105, 313, 398, 446, 475
Lsp1109I	GCAGC	1 cut(s)	306
LweI	GCATC	1 cut(s)	476
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	2 cut(s)	111, 143
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	1 cut(s)	7
MboI	GATC	1 cut(s)	5
MboII	GAAGA	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	154
MmeI	TCCRAC	1 cut(s)	284
MroI	TCCGGA	1 cut(s)	91
MseI	TTAA	2 cut(s)	56, 556
MspA1I	CMGCKG	1 cut(s)	331
MspI	CCGG	2 cut(s)	92, 300
MvnI	CGCG	1 cut(s)	331
MwoI	GCNNNNNNNGC	3 cut(s)	158, 284, 407
NdeII	GATC	1 cut(s)	5
NlaIII	CATG	2 cut(s)	161, 507
NmeAIII	GCCGAG	1 cut(s)	44
NmuCI	GTSAC	1 cut(s)	302
PceI	AGGCCT	1 cut(s)	287
PinAI	ACCGGT	1 cut(s)	299
PkrI	GCNGC	4 cut(s)	296, 330, 403, 551
PmaCI	CACGTG	1 cut(s)	144
PmlI	CACGTG	1 cut(s)	144
Ppu21I	YACGTR	2 cut(s)	112, 144
PshAI	GACNNNNGTC	1 cut(s)	144
PspCI	CACGTG	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	185
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SacII	CCGCGG	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	56, 556
SatI	GCNGC	4 cut(s)	295, 329, 402, 550
Sau3AI	GATC	1 cut(s)	5
Sau96I	GGNCC	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	8 cut(s)	26, 63, 114, 138, 146, 175, 360, 399
SfaNI	GCATC	1 cut(s)	476
Sfr303I	CCGCGG	1 cut(s)	332
SgrAI	CRCCGGYG	1 cut(s)	299
SgrBI	CCGCGG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
SseBI	AGGCCT	1 cut(s)	287
SsiI	CCGC	8 cut(s)	116, 249, 292, 329, 331, 382, 402, 549
SspI	AATATT	1 cut(s)	529
SspMI	CTAG	1 cut(s)	182
StuI	AGGCCT	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	106, 218
TaiI	ACGT	2 cut(s)	114, 146
TaqI	TCGA	1 cut(s)	138
TatI	WGTACW	1 cut(s)	120
TauI	GCSGC	3 cut(s)	331, 404, 552
Tru1I	TTAA	2 cut(s)	56, 556
Tru9I	TTAA	2 cut(s)	56, 556
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	1 cut(s)	294
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	1 cut(s)	407
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	1 cut(s)	376
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.