Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001477

Physical Location & Seq

Genomic Coordinates Forward (+)

4793190 .. 4796516

Gene Structure 3327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g05180.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

ATGGCGGCGCGATCTCTGCTCTCTGCTCTGCTAGTGGCGTTCGTGCTTACACAGCTTCATAGTGCTCGCGCGCTTACGCTGTCGTCGAGGCTGATACACCGCTTCTCCGACGAAGCGAAGACGCTTCGGATTTCGACGAATGGAGACCCCAAGGCCTTAGGTCGGTGGCCGCAGAGGAGCACCATGGACTACTACCACCTGCTCGCAACCATCGACTTCCAGAAACAGAATATGAAGCTCGGCTCTCGCCGGCACTTCCAGTTCCTCTTCCCCTCTGAAGGTGGCAATACGGTGTCGTTTGGCAACGACTTGGGCTGGTTGCATTATACGTGGATTGATATAGGGACGCCCAATGTTTCGTTTCTGGTTGCATTGGATACTGGGAGTGATCTGCTTTGGGTTCCATGTGATTGCATACAATGCGCTCCTCTGTCCGCGACTTACTCTACTACTCTGGATAGGGATTTACACGAGTACAGCCCATCTGGTTCAAACACCAGCAAGCATGTATCTTGCAGCCATGAGTTATGTGAATCTGGTCCAAAGTGCAAGAATTCGAAGCAGACATGCCCTTACACTATTGAGTACTACACAGAAAATACATCAAGTTCTGGATTGCTTGTGGAGGACATATTACACTTAGCAGCTGGCGGTGATGATGCATCAACAGCTTCTATTCGAGCCCCTGTTATCATAGGATGTGGTATGAAGCAAAGTGGTGGTTACCTGGATGGAATTGCTCCTGATGGTCTTATGGGTCTAGGACTTGGACAGACTTCAGTTCCTACTTTACTTGCTAAAGCGGGATTGACCAAGAACTCTTTCTCGATGTGCTTTGACGAGGACAGTTCTGGGAGACTACTATTTGGGGACCAGGGTCCAGCTACACAACAATCTACATCCTTCCTGACTTCTAATGGAAATTATGAAATGTATATCGTTGGTGTGGAAGCATGCTGTATTGGCAATTCTTGCCTTAAGCAGACAAGCTTCAAAGCACTGGTTGACAGTGGGACATCATTTACATTTCTTCCAGAAGCAGTGTACAATAAAATTGCAATGGAGTTTGACAGACGAGTAAATGCAACAGTTGCTAACTATGCAGGATCTCCTTGGAAGTACTGCTATAATACGAGTATTGTGGTCCATGATCCTGTTTTTCTGATACACGGTGATCAGGGAGTTATTGGATTCTGTTTGGCCATACAGCCAGCAGAGGGAGATACTGGAACGGTTGGACAGAACTTCATGACGGGATACCGGACAGTATTCGATAGGGAGAACTTGAAGCTAGGTTGGTCGCGTTCAAATTGCCGAGATCTGAATGATGTTAAAAGTATGCCCCTAGCACCTCCAAAAGGCACACCACCAAATCCCTTGCCAACAAATGAGCAGCAGAGCACCCCCGGTGGGTTTGCTCCTGCTGTTGCTGGAAGAGCTCCCTCAAAACCATCAGCTGCATCGAGTCAGCTCATCTCATCCCAGATTCCTTCGTTGAGATTATTGTCTCTACTGCTTAGATTATGTCTTATCATCTTCGTATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

516

Amino Acids

55.69

Weight (kDa)

6.41

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10080
fragaria_vesca	FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650
malus_domestica	MD01G1024100.v1.1 MD15G1362800.v1.1
prunus_persica	Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.6G179100_v2.0.a1
pyrus_communis	pycom01g05180 pycom15g32510
rosa_chinensis	RchiOBHm_Chr1g0350111 RchiOBHm_Chr2g0115521 RchiOBHm_Chr2g0129991
rosa_laevigata	RLG00000005996 RLG00000006248 RLG00000015274 RLG00000018190 RLG00000030771
rosa_multiflora	Rmu_sc0005625.1_g000012 Rmu_sc0007210.1_g000001 Rmu_sc0009900.1_g000009 Rmu_sc0021224.1_g000001 Rmu_sc0039462.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064010 Rroxscaffold_1G00064020 Rroxscaffold_2G00123530 Rroxscaffold_2G00128130 Rroxscaffold_2G00129010 Rroxscaffold_3G00229700 Rroxscaffold_5G00344250 Rroxscaffold_7G00197080 Rroxscaffold_7G00197100 Rroxscaffold_7G00217690
rosa_rugosa	Rorug02G0197300 Rorug02G0197300 Rorug02G0197300
rosa_samantha	Rh1CG101200 Rh1CG101300 Rh2AG254900 Rh2AG342200 Rh2BG265700 Rh2CG260100 Rh2DG263000 Rh2DG368300 Rh2DG576100
rosa_wichuraiana	Rw2G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	207
Acc36I	ACCTGC	1 cut(s)	207
AccII	CGCG	5 cut(s)	10, 69, 71, 437, 1303
AciI	CCGC	6 cut(s)	5, 100, 170, 435, 651, 803
AclWI	GGATC	2 cut(s)	1114, 1145
AcoI	YGGCCR	2 cut(s)	167, 1200
AcsI	RAATTY	1 cut(s)	553
AcuI	CTGAAG	2 cut(s)	297, 762
AcyI	GRCGYC	1 cut(s)	347
AfaI	GTAC	4 cut(s)	476, 587, 1046, 1121
AfiI	CCNNNNNNNGG	5 cut(s)	162, 278, 1217, 1358, 1410
AflII	CTTAAG	1 cut(s)	977
AgsI	TTSAA	4 cut(s)	492, 994, 1288, 1308
AjnI	CCWGG	2 cut(s)	726, 873
AjuI	GAANNNNNNNTTGG	2 cut(s)	806, 838
Alw21I	GWGCWC	4 cut(s)	67, 182, 1403, 1441
Alw26I	GTCTC	3 cut(s)	138, 850, 1512
AlwI	GGATC	2 cut(s)	1114, 1145
AoxI	GGCC	3 cut(s)	153, 167, 1200
ApeKI	GCWGC	4 cut(s)	516, 644, 1393, 1457
ApoI	RAATTY	1 cut(s)	553
Asp700I	GAANNNNTTC	1 cut(s)	821
AspLEI	GCGC	4 cut(s)	10, 71, 73, 425
AspS9I	GGNCC	4 cut(s)	539, 871, 878, 1144
AsuC2I	CCSGG	1 cut(s)	1407
AsuHPI	GGTGA	2 cut(s)	665, 1184
AsuII	TTCGAA	1 cut(s)	557
AvaII	GGWCC	4 cut(s)	539, 871, 878, 1144
AxyI	CCTNAGG	1 cut(s)	157
BalI	TGGCCA	1 cut(s)	1202
BanII	GRGCYC	2 cut(s)	685, 1441
BauI	CACGAG	1 cut(s)	470
BbsI	GAAGAC	1 cut(s)	125
Bbv12I	GWGCWC	4 cut(s)	67, 182, 1403, 1441
BbvI	GCAGC	4 cut(s)	528, 656, 1405, 1444
BccI	CCATC	5 cut(s)	218, 490, 725, 740, 1459
BciT130I	CCWGG	2 cut(s)	728, 875
BciVI	GTATCC	2 cut(s)	370, 1250
BclI	TGATCA	1 cut(s)	1174
BcnI	CCSGG	1 cut(s)	1407
BcoDI	GTCTC	3 cut(s)	138, 850, 1512
BfaI	CTAG	5 cut(s)	32, 761, 1292, 1346, 1546
BfrI	CTTAAG	1 cut(s)	977
BfuAI	ACCTGC	1 cut(s)	207
BfuI	GTATCC	2 cut(s)	370, 1250
BglII	AGATCT	1 cut(s)	1318
BisI	GCNGC	6 cut(s)	6, 170, 517, 645, 1394, 1458
BlsI	GCNGC	6 cut(s)	7, 171, 518, 646, 1395, 1459
BmcAI	AGTACT	2 cut(s)	587, 1121
Bme1390I	CCNGG	3 cut(s)	728, 875, 1407
Bme18I	GGWCC	4 cut(s)	539, 871, 878, 1144
BmgT120I	GGNCC	4 cut(s)	539, 871, 878, 1144
BmiI	GGNNCC	3 cut(s)	402, 872, 879
BmrFI	CCNGG	3 cut(s)	728, 875, 1407
BmrI	ACTGGG	1 cut(s)	390
BmsI	GCATC	3 cut(s)	649, 671, 1469
BmuI	ACTGGG	1 cut(s)	390
BoxI	GACNNNNGTC	1 cut(s)	876
BpiI	GAAGAC	1 cut(s)	125
Bpu14I	TTCGAA	1 cut(s)	557
BpuMI	CCSGG	1 cut(s)	1407
BsaAI	YACGTR	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	347
BsaI	GGTCTC	1 cut(s)	138
BsaJI	CCNNGG	5 cut(s)	150, 183, 874, 1112, 1405
BsaWI	WCCGGW	1 cut(s)	1260
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	5 cut(s)	162, 278, 1217, 1358, 1410
Bse118I	RCCGGY	1 cut(s)	249
Bse1I	ACTGG	4 cut(s)	259, 385, 1005, 1231
Bse21I	CCTNAGG	1 cut(s)	157
Bse3DI	GCAATG	1 cut(s)	1065
BseBI	CCWGG	2 cut(s)	728, 875
BseDI	CCNNGG	5 cut(s)	150, 183, 874, 1112, 1405
BseGI	GGATG	4 cut(s)	704, 736, 899, 1478
BseLI	CCNNNNNNNGG	5 cut(s)	162, 278, 1217, 1358, 1410
BseMI	GCAATG	1 cut(s)	1065
BseNI	ACTGG	4 cut(s)	259, 385, 1005, 1231
BsePI	GCGCGC	1 cut(s)	69
BseRI	GAGGAG	2 cut(s)	190, 417
BseXI	GCAGC	4 cut(s)	528, 656, 1405, 1444
Bsh1236I	CGCG	5 cut(s)	10, 69, 71, 437, 1303
BshFI	GGCC	3 cut(s)	155, 169, 1202
BsiHKAI	GWGCWC	4 cut(s)	67, 182, 1403, 1441
BsiSI	CCGG	3 cut(s)	250, 1261, 1407
BslFI	GGGAC	3 cut(s)	358, 884, 1027
BslI	CCNNNNNNNGG	5 cut(s)	162, 278, 1217, 1358, 1410
BsmAI	GTCTC	3 cut(s)	138, 850, 1512
BsmFI	GGGAC	3 cut(s)	358, 884, 1027
BsnI	GGCC	3 cut(s)	155, 169, 1202
Bso31I	GGTCTC	1 cut(s)	138
Bsp119I	TTCGAA	1 cut(s)	557
Bsp1286I	GDGCHC	5 cut(s)	67, 182, 685, 1403, 1441
Bsp1407I	TGTACA	1 cut(s)	1044
Bsp143I	GATC	6 cut(s)	11, 388, 1106, 1150, 1174, 1318
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	6 cut(s)	5, 100, 170, 435, 651, 803
BspANI	GGCC	3 cut(s)	155, 169, 1202
BspFNI	CGCG	5 cut(s)	10, 69, 71, 437, 1303
BspHI	TCATGA	1 cut(s)	1248
BspLI	GGNNCC	3 cut(s)	402, 872, 879
BspMI	ACCTGC	1 cut(s)	207
BspPI	GGATC	2 cut(s)	1114, 1145
BspQI	GCTCTTC	1 cut(s)	1429
BspT104I	TTCGAA	1 cut(s)	557
BspTI	CTTAAG	1 cut(s)	977
BspTNI	GGTCTC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	1065
BsrFI	RCCGGY	1 cut(s)	249
BsrGI	TGTACA	1 cut(s)	1044
BsrI	ACTGG	4 cut(s)	259, 385, 1005, 1231
BssAI	RCCGGY	1 cut(s)	249
BssECI	CCNNGG	5 cut(s)	150, 183, 874, 1112, 1405
BssHII	GCGCGC	1 cut(s)	69
BssMI	GATC	6 cut(s)	11, 388, 1106, 1150, 1174, 1318
BssNI	GRCGYC	1 cut(s)	347
BssSI	CACGAG	1 cut(s)	470
BssT1I	CCWWGG	3 cut(s)	150, 183, 1112
Bst2BI	CACGAG	1 cut(s)	470
Bst2UI	CCWGG	2 cut(s)	728, 875
Bst4CI	ACNGT	7 cut(s)	292, 848, 1010, 1090, 1172, 1234, 1267
Bst6I	CTCTTC	2 cut(s)	272, 1429
BstACI	GRCGYC	1 cut(s)	347
BstAFI	CTTAAG	1 cut(s)	977
BstAPI	GCANNNNNTGC	3 cut(s)	420, 972, 1091
BstAUI	TGTACA	1 cut(s)	1044
BstBAI	YACGTR	1 cut(s)	330
BstBI	TTCGAA	1 cut(s)	557
BstC8I	GCNNGC	8 cut(s)	67, 71, 204, 251, 503, 649, 955, 1212
BstDEI	CTNAG	3 cut(s)	157, 640, 1517
BstDSI	CCRYGG	1 cut(s)	183
BstEII	GGTNACC	1 cut(s)	722
BstENI	CCTNNNNNAGG	1 cut(s)	1356
BstF5I	GGATG	4 cut(s)	704, 736, 899, 1478
BstFNI	CGCG	5 cut(s)	10, 69, 71, 437, 1303
BstHHI	GCGC	4 cut(s)	10, 71, 73, 425
BstKTI	GATC	6 cut(s)	14, 391, 1109, 1153, 1177, 1321
BstMAI	GTCTC	3 cut(s)	138, 850, 1512
BstMBI	GATC	6 cut(s)	11, 388, 1106, 1150, 1174, 1318
BstMWI	GCNNNNNNNGC	9 cut(s)	16, 52, 420, 668, 963, 972, 1091, 1100, 1436
BstNI	CCWGG	2 cut(s)	728, 875
BstNSI	RCATGY	3 cut(s)	509, 570, 957
BstPAI	GACNNNNGTC	1 cut(s)	876
BstPI	GGTNACC	1 cut(s)	722
BstSCI	CCNGG	3 cut(s)	726, 873, 1405
BstUI	CGCG	5 cut(s)	10, 69, 71, 437, 1303
BstV1I	GCAGC	4 cut(s)	528, 656, 1405, 1444
BstV2I	GAAGAC	1 cut(s)	125
BstX2I	RGATCY	2 cut(s)	1106, 1318
BstYI	RGATCY	2 cut(s)	1106, 1318
Bsu36I	CCTNAGG	1 cut(s)	157
BsuI	GTATCC	2 cut(s)	370, 1250
BsuRI	GGCC	3 cut(s)	155, 169, 1202
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	4 cut(s)	704, 736, 899, 1478
BtsI	GCAGTG	1 cut(s)	1047
BtsIMutI	CAGTG	3 cut(s)	998, 1015, 1047
BveI	ACCTGC	1 cut(s)	207
Cac8I	GCNNGC	8 cut(s)	67, 71, 204, 251, 503, 649, 955, 1212
CciI	TCATGA	1 cut(s)	1248
CfoI	GCGC	4 cut(s)	10, 71, 73, 425
Cfr10I	RCCGGY	1 cut(s)	249
Cfr13I	GGNCC	4 cut(s)	539, 871, 878, 1144
CseI	GACGC	2 cut(s)	130, 355
Csp6I	GTAC	4 cut(s)	475, 586, 1045, 1120
CviAII	CATG	8 cut(s)	184, 405, 506, 521, 567, 954, 1148, 1249
CviQI	GTAC	4 cut(s)	475, 586, 1045, 1120
DdeI	CTNAG	3 cut(s)	157, 640, 1517
DpnI	GATC	6 cut(s)	13, 390, 1108, 1152, 1176, 1320
DpnII	GATC	6 cut(s)	11, 388, 1106, 1150, 1174, 1318
EaeI	YGGCCR	2 cut(s)	167, 1200
Eam1104I	CTCTTC	2 cut(s)	272, 1429
EarI	CTCTTC	2 cut(s)	272, 1429
Ecl136II	GAGCTC	1 cut(s)	1439
Eco130I	CCWWGG	3 cut(s)	150, 183, 1112
Eco147I	AGGCCT	1 cut(s)	155
Eco24I	GRGCYC	2 cut(s)	685, 1441
Eco31I	GGTCTC	1 cut(s)	138
Eco47I	GGWCC	4 cut(s)	539, 871, 878, 1144
Eco53kI	GAGCTC	1 cut(s)	1439
Eco57I	CTGAAG	2 cut(s)	297, 762
Eco81I	CCTNAGG	1 cut(s)	157
Eco91I	GGTNACC	1 cut(s)	722
EcoICRI	GAGCTC	1 cut(s)	1439
EcoNI	CCTNNNNNAGG	1 cut(s)	1356
EcoO65I	GGTNACC	1 cut(s)	722
EcoRI	GAATTC	1 cut(s)	553
EcoRII	CCWGG	2 cut(s)	726, 873
EcoT14I	CCWWGG	3 cut(s)	150, 183, 1112
EcoT22I	ATGCAT	1 cut(s)	664
EcoT38I	GRGCYC	2 cut(s)	685, 1441
ErhI	CCWWGG	3 cut(s)	150, 183, 1112
FaeI	CATG	8 cut(s)	187, 408, 509, 524, 570, 957, 1151, 1252
FaqI	GGGAC	3 cut(s)	358, 884, 1027
FatI	CATG	8 cut(s)	183, 404, 505, 520, 566, 953, 1147, 1248
FauI	CCCGC	1 cut(s)	796
FbaI	TGATCA	1 cut(s)	1174
Fnu4HI	GCNGC	6 cut(s)	6, 170, 517, 645, 1394, 1458
FokI	GGATG	4 cut(s)	711, 743, 886, 1465
FriOI	GRGCYC	2 cut(s)	685, 1441
Fsp4HI	GCNGC	6 cut(s)	6, 170, 517, 645, 1394, 1458
FspBI	CTAG	5 cut(s)	32, 761, 1292, 1346, 1546
GlaI	GCGC	4 cut(s)	9, 70, 72, 424
GluI	GCNGC	6 cut(s)	6, 170, 517, 645, 1394, 1458
HaeIII	GGCC	3 cut(s)	155, 169, 1202
HapII	CCGG	3 cut(s)	250, 1261, 1407
HgaI	GACGC	2 cut(s)	130, 355
HhaI	GCGC	4 cut(s)	10, 71, 73, 425
Hin1I	GRCGYC	1 cut(s)	347
Hin1II	CATG	8 cut(s)	187, 408, 509, 524, 570, 957, 1151, 1252
Hin6I	GCGC	4 cut(s)	8, 69, 71, 423
HinP1I	GCGC	4 cut(s)	8, 69, 71, 423
HincII	GTYRAC	1 cut(s)	1006
HindII	GTYRAC	1 cut(s)	1006
HindIII	AAGCTT	1 cut(s)	988
HinfI	GANTC	4 cut(s)	533, 1191, 1465, 1486
HpaII	CCGG	3 cut(s)	250, 1261, 1407
HphI	GGTGA	2 cut(s)	665, 1184
Hpy166II	GTNNAC	2 cut(s)	1006, 1045
Hpy188I	TCNGA	5 cut(s)	109, 129, 277, 1164, 1323
Hpy188III	TCNNGA	8 cut(s)	220, 455, 612, 743, 826, 907, 1034, 1249
Hpy8I	GTNNAC	2 cut(s)	1006, 1045
Hpy99I	CGWCG	3 cut(s)	88, 113, 139
HpyAV	CCTTC	3 cut(s)	272, 913, 1500
HpyCH4III	ACNGT	7 cut(s)	292, 848, 1010, 1090, 1172, 1234, 1267
HpyCH4IV	ACGT	1 cut(s)	329
HpyF10VI	GCNNNNNNNGC	9 cut(s)	16, 52, 420, 668, 963, 972, 1091, 1100, 1436
HpyF3I	CTNAG	3 cut(s)	157, 640, 1517
HpySE526I	ACGT	1 cut(s)	329
Hsp92I	GRCGYC	1 cut(s)	347
Hsp92II	CATG	8 cut(s)	187, 408, 509, 524, 570, 957, 1151, 1252
HspAI	GCGC	4 cut(s)	8, 69, 71, 423
KroI	GCCGGC	1 cut(s)	249
KroNI	GCCGGC	1 cut(s)	251
Ksp22I	TGATCA	1 cut(s)	1174
Kzo9I	GATC	6 cut(s)	11, 388, 1106, 1150, 1174, 1318
LguI	GCTCTTC	1 cut(s)	1429
LmnI	GCTCC	5 cut(s)	177, 430, 745, 1423, 1444
Lsp1109I	GCAGC	4 cut(s)	528, 656, 1405, 1444
LweI	GCATC	3 cut(s)	649, 671, 1469
MaeI	CTAG	5 cut(s)	32, 761, 1292, 1346, 1546
MaeII	ACGT	1 cut(s)	329
MaeIII	GTNAC	1 cut(s)	722
MalI	GATC	6 cut(s)	13, 390, 1108, 1152, 1176, 1320
MboI	GATC	6 cut(s)	11, 388, 1106, 1150, 1174, 1318
MboII	GAAGA	5 cut(s)	130, 259, 1022, 1446, 1528
MflI	RGATCY	2 cut(s)	1106, 1318
MhlI	GDGCHC	5 cut(s)	67, 182, 685, 1403, 1441
MlsI	TGGCCA	1 cut(s)	1202
MluCI	AATT	6 cut(s)	553, 735, 922, 967, 1053, 1309
MluNI	TGGCCA	1 cut(s)	1202
MlyI	GAGTC	1 cut(s)	1474
MmeI	TCCRAC	2 cut(s)	132, 1216
Mox20I	TGGCCA	1 cut(s)	1202
Mph1103I	ATGCAT	1 cut(s)	664
MroNI	GCCGGC	1 cut(s)	249
MroXI	GAANNNNTTC	1 cut(s)	821
MscI	TGGCCA	1 cut(s)	1202
MseI	TTAA	2 cut(s)	978, 1332
Msp20I	TGGCCA	1 cut(s)	1202
MspA1I	CMGCKG	2 cut(s)	647, 1457
MspCI	CTTAAG	1 cut(s)	977
MspI	CCGG	3 cut(s)	250, 1261, 1407
MspR9I	CCNGG	3 cut(s)	728, 875, 1407
MvaI	CCWGG	2 cut(s)	728, 875
MvnI	CGCG	5 cut(s)	10, 69, 71, 437, 1303
MwoI	GCNNNNNNNGC	9 cut(s)	16, 52, 420, 668, 963, 972, 1091, 1100, 1436
NaeI	GCCGGC	1 cut(s)	251
NciI	CCSGG	1 cut(s)	1407
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	6 cut(s)	11, 388, 1106, 1150, 1174, 1318
NgoMIV	GCCGGC	1 cut(s)	249
NlaIII	CATG	8 cut(s)	187, 408, 509, 524, 570, 957, 1151, 1252
NlaIV	GGNNCC	3 cut(s)	402, 872, 879
NmeAIII	GCCGAG	2 cut(s)	219, 1340
NsiI	ATGCAT	1 cut(s)	664
NspI	RCATGY	3 cut(s)	509, 570, 957
NspV	TTCGAA	1 cut(s)	557
PaeI	GCATGC	1 cut(s)	957
PagI	TCATGA	1 cut(s)	1248
PaqCI	CACCTGC	1 cut(s)	207
PauI	GCGCGC	1 cut(s)	69
PceI	AGGCCT	1 cut(s)	155
PciSI	GCTCTTC	1 cut(s)	1429
PcsI	WCGNNNNNNNCGW	2 cut(s)	83, 210
PdiI	GCCGGC	1 cut(s)	251
PdmI	GAANNNNTTC	1 cut(s)	821
PfeI	GAWTC	3 cut(s)	533, 1191, 1486
PkrI	GCNGC	6 cut(s)	7, 171, 518, 646, 1395, 1459
PleI	GAGTC	1 cut(s)	1473
PpsI	GAGTC	1 cut(s)	1473
Ppu21I	YACGTR	1 cut(s)	330
PshAI	GACNNNNGTC	1 cut(s)	876
Psp124BI	GAGCTC	1 cut(s)	1441
Psp6I	CCWGG	2 cut(s)	726, 873
PspEI	GGTNACC	1 cut(s)	722
PspGI	CCWGG	2 cut(s)	726, 873
PspN4I	GGNNCC	3 cut(s)	402, 872, 879
PspPI	GGNCC	4 cut(s)	539, 871, 878, 1144
PsuI	RGATCY	2 cut(s)	1106, 1318
PteI	GCGCGC	1 cut(s)	69
PvuII	CAGCTG	2 cut(s)	647, 1457
RsaI	GTAC	4 cut(s)	476, 587, 1046, 1121
RsaNI	GTAC	4 cut(s)	475, 586, 1045, 1120
SacI	GAGCTC	1 cut(s)	1441
SapI	GCTCTTC	1 cut(s)	1429
SaqAI	TTAA	2 cut(s)	978, 1332
SatI	GCNGC	6 cut(s)	6, 170, 517, 645, 1394, 1458
Sau3AI	GATC	6 cut(s)	11, 388, 1106, 1150, 1174, 1318
Sau96I	GGNCC	4 cut(s)	539, 871, 878, 1144
ScaI	AGTACT	2 cut(s)	587, 1121
SchI	GAGTC	1 cut(s)	1474
ScrFI	CCNGG	3 cut(s)	728, 875, 1407
SduI	GDGCHC	5 cut(s)	67, 182, 685, 1403, 1441
SfaNI	GCATC	3 cut(s)	649, 671, 1469
SfuI	TTCGAA	1 cut(s)	557
SinI	GGWCC	4 cut(s)	539, 871, 878, 1144
SmlI	CTYRAG	1 cut(s)	977
SmoI	CTYRAG	1 cut(s)	977
SphI	GCATGC	1 cut(s)	957
Sse9I	AATT	6 cut(s)	553, 735, 922, 967, 1053, 1309
SseBI	AGGCCT	1 cut(s)	155
SsiI	CCGC	6 cut(s)	5, 100, 170, 435, 651, 803
SspMI	CTAG	5 cut(s)	32, 761, 1292, 1346, 1546
SstI	GAGCTC	1 cut(s)	1441
StuI	AGGCCT	1 cut(s)	155
StyD4I	CCNGG	3 cut(s)	726, 873, 1405
StyI	CCWWGG	3 cut(s)	150, 183, 1112
TaaI	ACNGT	7 cut(s)	292, 848, 1010, 1090, 1172, 1234, 1267
TaiI	ACGT	1 cut(s)	332
TaqI	TCGA	8 cut(s)	86, 134, 213, 557, 679, 827, 1272, 1463
TasI	AATT	6 cut(s)	553, 735, 922, 967, 1053, 1309
TatI	WGTACW	4 cut(s)	474, 585, 1044, 1119
TauI	GCSGC	2 cut(s)	8, 172
TfiI	GAWTC	3 cut(s)	533, 1191, 1486
Tru1I	TTAA	2 cut(s)	978, 1332
Tru9I	TTAA	2 cut(s)	978, 1332
TscAI	CASTG	3 cut(s)	1005, 1015, 1047
TseI	GCWGC	4 cut(s)	516, 644, 1393, 1457
TspDTI	ATGAA	5 cut(s)	47, 248, 722, 942, 1237
TspRI	CASTG	3 cut(s)	1005, 1015, 1047
Vha464I	CTTAAG	1 cut(s)	977
VpaK11BI	GGWCC	4 cut(s)	539, 871, 878, 1144
XagI	CCTNNNNNAGG	1 cut(s)	1356
XapI	RAATTY	1 cut(s)	553
XceI	RCATGY	3 cut(s)	509, 570, 957
XmnI	GAANNNNTTC	1 cut(s)	821
XspI	CTAG	5 cut(s)	32, 761, 1292, 1346, 1546
ZrmI	AGTACT	2 cut(s)	587, 1121
Zsp2I	ATGCAT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.