Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001477

Physical Location & Seq

Genomic Coordinates Reverse (-)

40909968 .. 40914129

Gene Structure 4162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00197080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCAGGATAGCGATTTGAACGGGTATAGTCCGTCTGGCTCAAACACCAGCAAGCATGTGTCTTGCAGCCATGAGTTATGTACAGCTGGTCCAAACTGCAAGGGCCCCAAGCAGCCCTGCCCTTACACTATTGAATACTTCTCCGAAAATACATCGAGTTTTGGATTGCTTGTGGAGGATTTATTACATCTTGTAGCGGGGGTAACGGCCCCTGTGACCATAGGATGTGGTATGAAGCAAAGTGGTGTGTACCTGGATGGCATTGCTCCTAATGGTCTTATAGGTTTAGGACTTGGAGAGGTTTCAATTCCTAGTTTCCTTGCTAAAGCAGGATTGATCACAAACTCTTTCTCAATGTGCGTGAATGAGGAAGGTTCTGGGAGAATATTTTTGGGGACCAGGGACCAAATACTCAACAGTCTACATCCTTCTTGCCCTCAAACGGAAACTATGAAACCTACTTTGTTGACAAGCTTCAAGGCATTGGTTGATACTGGGACATCATTTACATTCCTTCCAGAAGAATTATATGATAAAATTGCAGTGGAGTTTGATAAGCGAGTGAATGCGACAATCACGAGTTATGAAGGATCTCCATGGAAGTACTACTATAATACCAGTTCTCAAGATTTGCTAAAAGTGCCTTCTGTGAGGCTTATGTTCCTGGCAAACAACAGTTTTGTGGAAATAATGGAGAAGCTTGGAAATGCACTAAAAACTCAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

242

Amino Acids

26.19

Weight (kDa)

5.22

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	9 - 132	9.3e-21	Xylanase inhibitor N-terminal
TAXi_C	PF14541	158 - 225	4.4e-06	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10080
fragaria_vesca	FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650
malus_domestica	MD01G1024100.v1.1 MD15G1362800.v1.1
prunus_persica	Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.6G179100_v2.0.a1
pyrus_communis	pycom01g05180 pycom15g32510
rosa_chinensis	RchiOBHm_Chr1g0350111 RchiOBHm_Chr2g0115521 RchiOBHm_Chr2g0129991
rosa_laevigata	RLG00000005996 RLG00000006248 RLG00000015274 RLG00000018190 RLG00000030771
rosa_multiflora	Rmu_sc0005625.1_g000012 Rmu_sc0007210.1_g000001 Rmu_sc0009900.1_g000009 Rmu_sc0021224.1_g000001 Rmu_sc0039462.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064010 Rroxscaffold_1G00064020 Rroxscaffold_2G00123530 Rroxscaffold_2G00128130 Rroxscaffold_2G00129010 Rroxscaffold_3G00229700 Rroxscaffold_5G00344250 Rroxscaffold_7G00197080 Rroxscaffold_7G00197100 Rroxscaffold_7G00217690
rosa_rugosa	Rorug02G0197300 Rorug02G0197300 Rorug02G0197300
rosa_samantha	Rh1CG101200 Rh1CG101300 Rh2AG254900 Rh2AG342200 Rh2BG265700 Rh2CG260100 Rh2DG263000 Rh2DG368300 Rh2DG576100
rosa_wichuraiana	Rw2G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	421
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	1 cut(s)	598
AfaI	GTAC	3 cut(s)	82, 251, 605
AfiI	CCNNNNNNNGG	1 cut(s)	442
AgsI	TTSAA	4 cut(s)	19, 134, 306, 478
AjnI	CCWGG	3 cut(s)	252, 398, 663
AluBI	AGCT	3 cut(s)	86, 474, 700
AluI	AGCT	3 cut(s)	86, 474, 700
AlwI	GGATC	1 cut(s)	598
AoxI	GGCC	2 cut(s)	103, 207
ApaI	GGGCCC	1 cut(s)	107
ApeKI	GCWGC	2 cut(s)	66, 112
AspS9I	GGNCC	6 cut(s)	89, 103, 104, 208, 396, 403
AvaII	GGWCC	3 cut(s)	89, 396, 403
BaeGI	GKGCMC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	107
BauI	CACGAG	1 cut(s)	577
BbvI	GCAGC	2 cut(s)	78, 124
BccI	CCATC	1 cut(s)	251
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	3 cut(s)	254, 400, 665
BclI	TGATCA	1 cut(s)	336
BfaI	CTAG	1 cut(s)	312
BisI	GCNGC	2 cut(s)	67, 113
BlsI	GCNGC	2 cut(s)	68, 114
BmcAI	AGTACT	1 cut(s)	605
Bme1390I	CCNGG	3 cut(s)	254, 400, 665
Bme18I	GGWCC	3 cut(s)	89, 396, 403
BmgT120I	GGNCC	6 cut(s)	89, 103, 104, 208, 396, 403
BmiI	GGNNCC	5 cut(s)	105, 106, 210, 397, 404
BmrFI	CCNGG	3 cut(s)	254, 400, 665
BmrI	ACTGGG	1 cut(s)	504
BmuI	ACTGGG	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	609
BsaJI	CCNNGG	2 cut(s)	399, 596
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse1I	ACTGG	2 cut(s)	499, 618
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	3 cut(s)	254, 400, 665
BseDI	CCNNGG	2 cut(s)	399, 596
BseGI	GGATG	3 cut(s)	230, 262, 424
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseMI	GCAATG	1 cut(s)	261
BseNI	ACTGG	2 cut(s)	499, 618
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	78, 124
BshFI	GGCC	2 cut(s)	105, 209
BslFI	GGGAC	3 cut(s)	409, 416, 511
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmFI	GGGAC	3 cut(s)	409, 416, 511
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	2 cut(s)	105, 209
Bsp120I	GGGCCC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp1407I	TGTACA	1 cut(s)	80
Bsp143I	GATC	2 cut(s)	336, 590
Bsp19I	CCATGG	1 cut(s)	596
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	2 cut(s)	105, 209
BspLI	GGNNCC	5 cut(s)	105, 106, 210, 397, 404
BspPI	GGATC	1 cut(s)	598
BsrDI	GCAATG	1 cut(s)	261
BsrGI	TGTACA	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	499, 618
BssECI	CCNNGG	2 cut(s)	399, 596
BssMI	GATC	2 cut(s)	336, 590
BssSI	CACGAG	1 cut(s)	577
BssT1I	CCWWGG	1 cut(s)	596
Bst2BI	CACGAG	1 cut(s)	577
Bst2UI	CCWGG	3 cut(s)	254, 400, 665
Bst4CI	ACNGT	2 cut(s)	419, 677
BstAUI	TGTACA	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	53
BstDSI	CCRYGG	1 cut(s)	596
BstF5I	GGATG	3 cut(s)	230, 262, 424
BstKTI	GATC	2 cut(s)	339, 593
BstMBI	GATC	2 cut(s)	336, 590
BstMWI	GCNNNNNNNGC	1 cut(s)	640
BstNI	CCWGG	3 cut(s)	254, 400, 665
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	3 cut(s)	252, 398, 663
BstSLI	GKGCMC	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	78, 124
BstX2I	RGATCY	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	590
BsuRI	GGCC	2 cut(s)	105, 209
BtgI	CCRYGG	1 cut(s)	596
BtsCI	GGATG	3 cut(s)	230, 262, 424
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	1 cut(s)	549
Cac8I	GCNNGC	1 cut(s)	53
Cfr13I	GGNCC	6 cut(s)	89, 103, 104, 208, 396, 403
Csp6I	GTAC	3 cut(s)	81, 250, 604
CviAII	CATG	3 cut(s)	56, 71, 597
CviJI	RGCY	9 cut(s)	39, 69, 86, 105, 115, 209, 474, 655, 700
CviKI_1	RGCY	9 cut(s)	39, 69, 86, 105, 115, 209, 474, 655, 700
CviQI	GTAC	3 cut(s)	81, 250, 604
DpnI	GATC	2 cut(s)	338, 592
DpnII	GATC	2 cut(s)	336, 590
Eco130I	CCWWGG	1 cut(s)	596
Eco24I	GRGCYC	1 cut(s)	107
Eco47I	GGWCC	3 cut(s)	89, 396, 403
EcoO109I	RGGNCCY	2 cut(s)	103, 104
EcoRII	CCWGG	3 cut(s)	252, 398, 663
EcoT14I	CCWWGG	1 cut(s)	596
EcoT38I	GRGCYC	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	596
FaeI	CATG	3 cut(s)	59, 74, 600
FaqI	GGGAC	3 cut(s)	409, 416, 511
FatI	CATG	3 cut(s)	55, 70, 596
FauI	CCCGC	1 cut(s)	190
FbaI	TGATCA	1 cut(s)	336
FblI	GTMKAC	1 cut(s)	421
Fnu4HI	GCNGC	2 cut(s)	67, 113
FokI	GGATG	3 cut(s)	237, 269, 411
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	2 cut(s)	67, 113
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	2 cut(s)	67, 113
HaeIII	GGCC	2 cut(s)	105, 209
Hin1II	CATG	3 cut(s)	59, 74, 600
HincII	GTYRAC	1 cut(s)	468
HindII	GTYRAC	1 cut(s)	468
HindIII	AAGCTT	2 cut(s)	472, 698
Hpy166II	GTNNAC	3 cut(s)	250, 422, 468
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	3 cut(s)	518, 577, 626
Hpy8I	GTNNAC	3 cut(s)	250, 422, 468
HpyAV	CCTTC	5 cut(s)	365, 438, 524, 581, 654
HpyCH4III	ACNGT	2 cut(s)	419, 677
HpyCH4V	TGCA	5 cut(s)	4, 66, 99, 542, 710
HpyF10VI	GCNNNNNNNGC	1 cut(s)	640
Hsp92II	CATG	3 cut(s)	59, 74, 600
Ksp22I	TGATCA	1 cut(s)	336
Kzo9I	GATC	2 cut(s)	336, 590
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	2 cut(s)	78, 124
MaeI	CTAG	1 cut(s)	312
MaeIII	GTNAC	2 cut(s)	202, 214
MalI	GATC	2 cut(s)	338, 592
MboI	GATC	2 cut(s)	336, 590
MboII	GAAGA	1 cut(s)	533
MflI	RGATCY	1 cut(s)	590
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	3 cut(s)	306, 524, 537
MnlI	CCTC	5 cut(s)	169, 292, 361, 447, 645
MspA1I	CMGCKG	1 cut(s)	86
MspR9I	CCNGG	3 cut(s)	254, 400, 665
Mva1269I	GAATGC	1 cut(s)	571
MvaI	CCWGG	3 cut(s)	254, 400, 665
MwoI	GCNNNNNNNGC	1 cut(s)	640
NcoI	CCATGG	1 cut(s)	596
NdeII	GATC	2 cut(s)	336, 590
NlaIII	CATG	3 cut(s)	59, 74, 600
NlaIV	GGNNCC	5 cut(s)	105, 106, 210, 397, 404
NmuCI	GTSAC	1 cut(s)	214
NspI	RCATGY	1 cut(s)	59
PctI	GAATGC	1 cut(s)	571
PkrI	GCNGC	2 cut(s)	68, 114
Psp6I	CCWGG	3 cut(s)	252, 398, 663
PspGI	CCWGG	3 cut(s)	252, 398, 663
PspN4I	GGNNCC	5 cut(s)	105, 106, 210, 397, 404
PspOMI	GGGCCC	1 cut(s)	103
PspPI	GGNCC	6 cut(s)	89, 103, 104, 208, 396, 403
PsuI	RGATCY	1 cut(s)	590
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	3 cut(s)	82, 251, 605
RsaNI	GTAC	3 cut(s)	81, 250, 604
SatI	GCNGC	2 cut(s)	67, 113
Sau3AI	GATC	2 cut(s)	336, 590
Sau96I	GGNCC	6 cut(s)	89, 103, 104, 208, 396, 403
ScaI	AGTACT	1 cut(s)	605
ScrFI	CCNGG	3 cut(s)	254, 400, 665
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	8 cut(s)	88, 255, 286, 303, 376, 460, 476, 702
SinI	GGWCC	3 cut(s)	89, 396, 403
SmlI	CTYRAG	1 cut(s)	624
SmoI	CTYRAG	1 cut(s)	624
Sse9I	AATT	3 cut(s)	306, 524, 537
SsiI	CCGC	1 cut(s)	197
SspI	AATATT	1 cut(s)	387
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	3 cut(s)	252, 398, 663
StyI	CCWWGG	1 cut(s)	596
TaaI	ACNGT	2 cut(s)	419, 677
TaqI	TCGA	1 cut(s)	155
TasI	AATT	3 cut(s)	306, 524, 537
TatI	WGTACW	2 cut(s)	80, 603
TscAI	CASTG	1 cut(s)	549
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	2 cut(s)	66, 112
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	3 cut(s)	248, 467, 600
TspGWI	ACGGA	2 cut(s)	21, 458
TspRI	CASTG	1 cut(s)	549
VpaK11BI	GGWCC	3 cut(s)	89, 396, 403
XceI	RCATGY	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	421
XspI	CTAG	1 cut(s)	312
ZrmI	AGTACT	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.