Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001477

Physical Location & Seq

Genomic Coordinates Forward (+)

63730636 .. 63736125

Gene Structure 5490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00128130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCGGCTCATGGATCTCTCCTCTTTCTCCTTCCCGTACTCTCTCTCCTCCTCCGTAATGCGGCCGCGATTACGCTCTCCTCCCGCCTCATACACCGCTTCTCCGACGAGGCCAAGGCTCTCAAGGCCTCCCGCAGCACCGGCGACGCCAAATGGCTCGGTCGGTGGCCGCGGAGAAACTCCATGGACTACTATCACCTCCTCGCCAGCACCGACTTCCAGCGCCAGAAGATGAAGCTCGGCACCTCTCGTCATCAGTTCCAGTTCCTCTTCCCCTCCGAAGGCAGCAACACGGCGTCGTTTGGCAATGACTTCGGCTGGTTGCATTATACGTGGATTGATATAGGGACGCCGAATGTTTCGTTTCTGGTGGCATTGGATACTGGAAGTGATCTGCTTTGGGTTCCATGTGATTGCCTACAATGCGCTCCCCTATCAGCTACTCACTATAGTACTCTGGATAGAGATTTGAACGAGTATAGTCCGTCTGGCTCAAACTCCAGCAAGCATGTGTCTTGCAGCCATGAGTTATGTACAGCTGGTCCAAACTGCAAGGGCCCCAAGCAGCCCTGCCCTTACACTATTGAATACTTCTCGGAAAATACATCGAGTTCTGGATTGCTCGTGGAGGATATATTACATCTTGTAGCGGGGGTAACGGTGTATCAAACAATTCTATTCAGGCCCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

230

Amino Acids

25.54

Weight (kDa)

7.1

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	110 - 215	6.7e-20	Xylanase inhibitor N-terminal
Asp	PF00026	110 - 169	8e-06	Eukaryotic aspartyl protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10080
fragaria_vesca	FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650
malus_domestica	MD01G1024100.v1.1 MD15G1362800.v1.1
prunus_persica	Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.6G179100_v2.0.a1
pyrus_communis	pycom01g05180 pycom15g32510
rosa_chinensis	RchiOBHm_Chr1g0350111 RchiOBHm_Chr2g0115521 RchiOBHm_Chr2g0129991
rosa_laevigata	RLG00000005996 RLG00000006248 RLG00000015274 RLG00000018190 RLG00000030771
rosa_multiflora	Rmu_sc0005625.1_g000012 Rmu_sc0007210.1_g000001 Rmu_sc0009900.1_g000009 Rmu_sc0021224.1_g000001 Rmu_sc0039462.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064010 Rroxscaffold_1G00064020 Rroxscaffold_2G00123530 Rroxscaffold_2G00128130 Rroxscaffold_2G00129010 Rroxscaffold_3G00229700 Rroxscaffold_5G00344250 Rroxscaffold_7G00197080 Rroxscaffold_7G00197100 Rroxscaffold_7G00217690
rosa_rugosa	Rorug02G0197300 Rorug02G0197300 Rorug02G0197300
rosa_samantha	Rh1CG101200 Rh1CG101300 Rh2AG254900 Rh2AG342200 Rh2BG265700 Rh2CG260100 Rh2DG263000 Rh2DG368300 Rh2DG576100
rosa_wichuraiana	Rw2G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	242
AccII	CGCG	2 cut(s)	68, 172
AciI	CCGC	9 cut(s)	5, 62, 66, 85, 97, 133, 170, 172, 650
AclWI	GGATC	1 cut(s)	22
AcoI	YGGCCR	2 cut(s)	63, 167
AcyI	GRCGYC	3 cut(s)	147, 296, 350
AfaI	GTAC	3 cut(s)	39, 454, 535
AfiI	CCNNNNNNNGG	2 cut(s)	61, 281
AgsI	TTSAA	2 cut(s)	472, 587
AluBI	AGCT	3 cut(s)	238, 440, 539
AluI	AGCT	3 cut(s)	238, 440, 539
AlwI	GGATC	1 cut(s)	22
AoxI	GGCC	6 cut(s)	63, 111, 126, 167, 556, 683
ApaI	GGGCCC	1 cut(s)	560
ApeKI	GCWGC	4 cut(s)	135, 285, 519, 565
AspLEI	GCGC	2 cut(s)	225, 428
AspS9I	GGNCC	4 cut(s)	542, 556, 557, 684
AsuHPI	GGTGA	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	542
BaeGI	GKGCMC	1 cut(s)	560
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	560
BauI	CACGAG	1 cut(s)	623
BbvI	GCAGC	4 cut(s)	147, 297, 531, 577
BceAI	ACGGC	1 cut(s)	309
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciVI	GTATCC	1 cut(s)	373
BfmI	CTRYAG	1 cut(s)	448
BfoI	RGCGCY	1 cut(s)	226
BfuI	GTATCC	1 cut(s)	373
BisI	GCNGC	8 cut(s)	6, 63, 66, 136, 170, 286, 520, 566
BlsI	GCNGC	8 cut(s)	7, 64, 67, 137, 171, 287, 521, 567
BmcAI	AGTACT	1 cut(s)	454
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	4 cut(s)	542, 556, 557, 684
BmiI	GGNNCC	5 cut(s)	244, 405, 558, 559, 686
BpmI	CTGGAG	1 cut(s)	484
BpuEI	CTTGAG	1 cut(s)	107
BsaAI	YACGTR	1 cut(s)	333
BsaHI	GRCGYC	3 cut(s)	147, 296, 350
BsaJI	CCNNGG	3 cut(s)	114, 170, 183
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 60, 86, 116
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 281
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	2 cut(s)	262, 388
Bse3DI	GCAATG	1 cut(s)	313
BseDI	CCNNGG	3 cut(s)	114, 170, 183
BseLI	CCNNNNNNNGG	2 cut(s)	61, 281
BseMI	GCAATG	1 cut(s)	313
BseNI	ACTGG	2 cut(s)	262, 388
BseRI	GAGGAG	5 cut(s)	11, 38, 41, 70, 191
BseSI	GKGCMC	1 cut(s)	560
BseX3I	CGGCCG	1 cut(s)	63
BseXI	GCAGC	4 cut(s)	147, 297, 531, 577
Bsh1236I	CGCG	2 cut(s)	68, 172
Bsh1285I	CGRYCG	2 cut(s)	66, 163
BshFI	GGCC	6 cut(s)	65, 113, 128, 169, 558, 685
BshNI	GGYRCC	1 cut(s)	242
BsiEI	CGRYCG	2 cut(s)	66, 163
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	2 cut(s)	61, 281
BsmFI	GGGAC	1 cut(s)	361
BsnI	GGCC	6 cut(s)	65, 113, 128, 169, 558, 685
Bsp120I	GGGCCC	1 cut(s)	556
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp1407I	TGTACA	1 cut(s)	533
Bsp143I	GATC	2 cut(s)	14, 391
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	9 cut(s)	5, 62, 66, 85, 97, 133, 170, 172, 650
BspANI	GGCC	6 cut(s)	65, 113, 128, 169, 558, 685
BspFNI	CGCG	2 cut(s)	68, 172
BspLI	GGNNCC	5 cut(s)	244, 405, 558, 559, 686
BspPI	GGATC	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	313
BsrFI	RCCGGY	1 cut(s)	140
BsrGI	TGTACA	1 cut(s)	533
BsrI	ACTGG	2 cut(s)	262, 388
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	3 cut(s)	114, 170, 183
BssMI	GATC	2 cut(s)	14, 391
BssNI	GRCGYC	3 cut(s)	147, 296, 350
BssSI	CACGAG	1 cut(s)	623
BssT1I	CCWWGG	2 cut(s)	114, 183
Bst2BI	CACGAG	1 cut(s)	623
Bst4CI	ACNGT	1 cut(s)	661
Bst6I	CTCTTC	1 cut(s)	275
BstACI	GRCGYC	3 cut(s)	147, 296, 350
BstAUI	TGTACA	1 cut(s)	533
BstBAI	YACGTR	1 cut(s)	333
BstC8I	GCNNGC	2 cut(s)	208, 506
BstDSI	CCRYGG	2 cut(s)	170, 183
BstFNI	CGCG	2 cut(s)	68, 172
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	2 cut(s)	225, 428
BstKTI	GATC	2 cut(s)	17, 394
BstMBI	GATC	2 cut(s)	14, 391
BstMCI	CGRYCG	2 cut(s)	66, 163
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 141, 423
BstNSI	RCATGY	1 cut(s)	512
BstSFI	CTRYAG	1 cut(s)	448
BstSLI	GKGCMC	1 cut(s)	560
BstUI	CGCG	2 cut(s)	68, 172
BstV1I	GCAGC	4 cut(s)	147, 297, 531, 577
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
BstZI	CGGCCG	1 cut(s)	63
BsuI	GTATCC	1 cut(s)	373
BsuRI	GGCC	6 cut(s)	65, 113, 128, 169, 558, 685
BtgI	CCRYGG	2 cut(s)	170, 183
Cac8I	GCNNGC	2 cut(s)	208, 506
CciNI	GCGGCCGC	1 cut(s)	63
CfoI	GCGC	2 cut(s)	225, 428
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	4 cut(s)	542, 556, 557, 684
Cfr42I	CCGCGG	1 cut(s)	173
CseI	GACGC	3 cut(s)	155, 285, 358
Csp6I	GTAC	3 cut(s)	38, 453, 534
CviAII	CATG	5 cut(s)	11, 184, 408, 509, 524
CviQI	GTAC	3 cut(s)	38, 453, 534
DpnI	GATC	2 cut(s)	16, 393
DpnII	GATC	2 cut(s)	14, 391
EaeI	YGGCCR	2 cut(s)	63, 167
EagI	CGGCCG	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
EclXI	CGGCCG	1 cut(s)	63
Eco130I	CCWWGG	2 cut(s)	114, 183
Eco147I	AGGCCT	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	560
Eco47I	GGWCC	1 cut(s)	542
Eco52I	CGGCCG	1 cut(s)	63
EcoO109I	RGGNCCY	3 cut(s)	556, 557, 684
EcoT14I	CCWWGG	2 cut(s)	114, 183
EcoT38I	GRGCYC	1 cut(s)	560
ErhI	CCWWGG	2 cut(s)	114, 183
FaeI	CATG	5 cut(s)	14, 187, 411, 512, 527
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	5 cut(s)	10, 183, 407, 508, 523
FauI	CCCGC	3 cut(s)	92, 140, 643
Fnu4HI	GCNGC	8 cut(s)	6, 63, 66, 136, 170, 286, 520, 566
FriOI	GRGCYC	1 cut(s)	560
Fsp4HI	GCNGC	8 cut(s)	6, 63, 66, 136, 170, 286, 520, 566
GlaI	GCGC	2 cut(s)	224, 427
GluI	GCNGC	8 cut(s)	6, 63, 66, 136, 170, 286, 520, 566
GsuI	CTGGAG	1 cut(s)	484
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	6 cut(s)	65, 113, 128, 169, 558, 685
HapII	CCGG	1 cut(s)	141
HgaI	GACGC	3 cut(s)	155, 285, 358
HhaI	GCGC	2 cut(s)	225, 428
Hin1I	GRCGYC	3 cut(s)	147, 296, 350
Hin1II	CATG	5 cut(s)	14, 187, 411, 512, 527
Hin6I	GCGC	2 cut(s)	223, 426
HinP1I	GCGC	2 cut(s)	223, 426
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	1 cut(s)	188
Hpy188I	TCNGA	3 cut(s)	106, 280, 598
Hpy188III	TCNNGA	2 cut(s)	458, 615
Hpy99I	CGWCG	3 cut(s)	110, 149, 301
HpyAV	CCTTC	2 cut(s)	41, 275
HpyCH4III	ACNGT	1 cut(s)	661
HpyCH4IV	ACGT	1 cut(s)	332
HpyCH4V	TGCA	3 cut(s)	325, 519, 552
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 141, 423
HpySE526I	ACGT	1 cut(s)	332
Hsp92I	GRCGYC	3 cut(s)	147, 296, 350
Hsp92II	CATG	5 cut(s)	14, 187, 411, 512, 527
HspAI	GCGC	2 cut(s)	223, 426
KspI	CCGCGG	1 cut(s)	173
Kzo9I	GATC	2 cut(s)	14, 391
LmnI	GCTCC	1 cut(s)	433
Lsp1109I	GCAGC	4 cut(s)	147, 297, 531, 577
MaeII	ACGT	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	655
MalI	GATC	2 cut(s)	16, 393
MboI	GATC	2 cut(s)	14, 391
MboII	GAAGA	2 cut(s)	241, 262
MflI	RGATCY	1 cut(s)	14
MhlI	GDGCHC	1 cut(s)	560
MluCI	AATT	1 cut(s)	672
MmeI	TCCRAC	1 cut(s)	129
MspA1I	CMGCKG	2 cut(s)	172, 539
MspI	CCGG	1 cut(s)	141
MvnI	CGCG	2 cut(s)	68, 172
MwoI	GCNNNNNNNGC	3 cut(s)	125, 141, 423
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	2 cut(s)	14, 391
NlaIII	CATG	5 cut(s)	14, 187, 411, 512, 527
NlaIV	GGNNCC	5 cut(s)	244, 405, 558, 559, 686
NmeAIII	GCCGAG	1 cut(s)	219
NotI	GCGGCCGC	1 cut(s)	63
NspI	RCATGY	1 cut(s)	512
PceI	AGGCCT	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PkrI	GCNGC	8 cut(s)	7, 64, 67, 137, 171, 287, 521, 567
Ppu21I	YACGTR	1 cut(s)	333
PspN4I	GGNNCC	5 cut(s)	244, 405, 558, 559, 686
PspOMI	GGGCCC	1 cut(s)	556
PspPI	GGNCC	4 cut(s)	542, 556, 557, 684
PsuI	RGATCY	1 cut(s)	14
PvuII	CAGCTG	1 cut(s)	539
RsaI	GTAC	3 cut(s)	39, 454, 535
RsaNI	GTAC	3 cut(s)	38, 453, 534
SacII	CCGCGG	1 cut(s)	173
SatI	GCNGC	8 cut(s)	6, 63, 66, 136, 170, 286, 520, 566
Sau3AI	GATC	2 cut(s)	14, 391
Sau96I	GGNCC	4 cut(s)	542, 556, 557, 684
ScaI	AGTACT	1 cut(s)	454
SduI	GDGCHC	1 cut(s)	560
SetI	ASST	6 cut(s)	201, 240, 248, 335, 442, 541
SfcI	CTRYAG	1 cut(s)	448
Sfr303I	CCGCGG	1 cut(s)	173
SgrAI	CRCCGGYG	1 cut(s)	140
SgrBI	CCGCGG	1 cut(s)	173
SinI	GGWCC	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	672
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	9 cut(s)	5, 62, 66, 85, 97, 133, 170, 172, 650
StuI	AGGCCT	1 cut(s)	128
StyI	CCWWGG	2 cut(s)	114, 183
TaaI	ACNGT	1 cut(s)	661
TaiI	ACGT	1 cut(s)	335
TaqI	TCGA	1 cut(s)	608
TaqII	GACCGA	1 cut(s)	149
TasI	AATT	1 cut(s)	672
TatI	WGTACW	2 cut(s)	452, 533
TauI	GCSGC	4 cut(s)	8, 65, 68, 172
TseI	GCWGC	4 cut(s)	135, 285, 519, 565
TspDTI	ATGAA	1 cut(s)	248
TspGWI	ACGGA	2 cut(s)	44, 474
VpaK11BI	GGWCC	1 cut(s)	542
XceI	RCATGY	1 cut(s)	512
ZrmI	AGTACT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.