Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001477

Physical Location & Seq

Genomic Coordinates Forward (+)

85876773 .. 85883284

Gene Structure 6512 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00064020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGTTCTTCGAAGAAGCTTGGAGTACGAGTGGAGGATGAGAGGCACCATGCAAATGCAAACATGACCATAATATTAATTGGTATTAAGTGTGATCTTACTCATACACGAGCTGTGAACACGGGGAAAGGGGAGCAATTTGCAAAGGAATATGGATTGATCTTCATGGAGGCTTCTGCTAAAACTGCTCAGAATGTTGAGGAGGCATTCATAAGAACCGCTGCAACCATATACAAGAAGATTCAAGATGGCGTTTTTGATGTGTCGAATGAGGTGGACATGGATCATGGTGGACATTGGGCATTTCCCAACGAGGGGCAGAGTTTTCGTGCGAAGGTCAAGGCCAACAGAGAACTCTTTCTTAAAGGGAAGATTCCCTGGTCTCCATCTTATCTCCCTCTCCCCGCTCTTCCCTCTAGATCTTACTTACTCGAGCTCTCTCACTCGGAGCGACCTCCATGGCGGCTCGGAGATCTCTCGCTCTTTCTCCTTCCCCTACACTCTCTCCTCCTCCGTACAGCATCAACGATTACGCTCTCCCCGCGCCTCATACACCGCTTCTCCGACGAGGCCAAGGCTCTCAAGGCCTCCCACGGCACCGGCGACGCCAAATGGCTCGGTCGGTGGCCACGAAGAACTCTATCGACTACTATCACCTCTTCGCCGGCACCGACTTCCGGTGCCGAAGATGAAGCTCGGCACTTTTTGTCATCGGTTCCAGTTCCTCTTCCCTCCGAAGGCAGCAAACACGGCGTCGTTGGCAATGACTTTGGCTGGTTGCATTATACGTGGACCGTTATATGGATGCCGAATGTTTCGTTTCGGTGGAGGAAGAGAGATGACGACGACCCACCTGGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

287

Amino Acids

32.1

Weight (kDa)

9.25

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	12 - 78	2.7e-16	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10080
fragaria_vesca	FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650
malus_domestica	MD01G1024100.v1.1 MD15G1362800.v1.1
prunus_persica	Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.6G179100_v2.0.a1
pyrus_communis	pycom01g05180 pycom15g32510
rosa_chinensis	RchiOBHm_Chr1g0350111 RchiOBHm_Chr2g0115521 RchiOBHm_Chr2g0129991
rosa_laevigata	RLG00000005996 RLG00000006248 RLG00000015274 RLG00000018190 RLG00000030771
rosa_multiflora	Rmu_sc0005625.1_g000012 Rmu_sc0007210.1_g000001 Rmu_sc0009900.1_g000009 Rmu_sc0021224.1_g000001 Rmu_sc0039462.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064010 Rroxscaffold_1G00064020 Rroxscaffold_2G00123530 Rroxscaffold_2G00128130 Rroxscaffold_2G00129010 Rroxscaffold_3G00229700 Rroxscaffold_5G00344250 Rroxscaffold_7G00197080 Rroxscaffold_7G00197100 Rroxscaffold_7G00217690
rosa_rugosa	Rorug02G0197300 Rorug02G0197300 Rorug02G0197300
rosa_samantha	Rh1CG101200 Rh1CG101300 Rh2AG254900 Rh2AG342200 Rh2BG265700 Rh2CG260100 Rh2DG263000 Rh2DG368300 Rh2DG576100
rosa_wichuraiana	Rw2G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	45, 596, 667, 680
AccBSI	CCGCTC	1 cut(s)	407
AccII	CGCG	1 cut(s)	544
AciI	CCGC	5 cut(s)	219, 405, 463, 542, 556
AclWI	GGATC	1 cut(s)	291
AcoI	YGGCCR	1 cut(s)	626
AcyI	GRCGYC	2 cut(s)	606, 753
AfaI	GTAC	2 cut(s)	27, 517
AfiI	CCNNNNNNNGG	5 cut(s)	314, 315, 677, 737, 801
AgsI	TTSAA	1 cut(s)	245
AjnI	CCWGG	2 cut(s)	377, 853
AluBI	AGCT	4 cut(s)	19, 113, 436, 695
AluI	AGCT	4 cut(s)	19, 113, 436, 695
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	1 cut(s)	387
AlwI	GGATC	1 cut(s)	291
Ama87I	CYCGRG	1 cut(s)	431
AoxI	GGCC	4 cut(s)	342, 570, 585, 626
ApeKI	GCWGC	2 cut(s)	221, 741
ArsI	GACNNNNNNTTYG	2 cut(s)	738, 770
AseI	ATTAAT	1 cut(s)	77
Asp700I	GAANNNNTTC	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	546
AspS9I	GGNCC	1 cut(s)	792
AsuHPI	GGTGA	1 cut(s)	646
AsuII	TTCGAA	1 cut(s)	11
AvaI	CYCGRG	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	792
BalI	TGGCCA	1 cut(s)	628
BanI	GGYRCC	4 cut(s)	45, 596, 667, 680
BanII	GRGCYC	1 cut(s)	438
BauI	CACGAG	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	438
BbvI	GCAGC	2 cut(s)	208, 753
BccI	CCATC	2 cut(s)	242, 394
BceAI	ACGGC	2 cut(s)	610, 766
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BciT130I	CCWGG	2 cut(s)	379, 855
BcoDI	GTCTC	1 cut(s)	387
BfaI	CTAG	1 cut(s)	417
BglII	AGATCT	2 cut(s)	419, 472
BisI	GCNGC	3 cut(s)	222, 464, 742
BlsI	GCNGC	3 cut(s)	223, 465, 743
Bme1390I	CCNGG	2 cut(s)	379, 855
Bme18I	GGWCC	1 cut(s)	792
BmeT110I	CYCGRG	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	792
BmiI	GGNNCC	5 cut(s)	47, 598, 669, 682, 717
BmrFI	CCNGG	2 cut(s)	379, 855
BmsI	GCATC	2 cut(s)	530, 795
Bpu14I	TTCGAA	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	566
BsaAI	YACGTR	1 cut(s)	789
BsaHI	GRCGYC	2 cut(s)	606, 753
BsaI	GGTCTC	1 cut(s)	387
BsaJI	CCNNGG	4 cut(s)	377, 458, 573, 592
BsaWI	WCCGGW	1 cut(s)	677
BsaXI	ACNNNNNCTCC	6 cut(s)	15, 45, 489, 519, 545, 575
Bsc4I	CCNNNNNNNGG	5 cut(s)	314, 315, 677, 737, 801
Bse118I	RCCGGY	2 cut(s)	599, 664
Bse1I	ACTGG	1 cut(s)	719
Bse3DI	GCAATG	1 cut(s)	769
BseBI	CCWGG	2 cut(s)	379, 855
BseDI	CCNNGG	4 cut(s)	377, 458, 573, 592
BseGI	GGATG	2 cut(s)	43, 810
BseLI	CCNNNNNNNGG	5 cut(s)	314, 315, 677, 737, 801
BseMI	GCAATG	1 cut(s)	769
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	1 cut(s)	719
BseRI	GAGGAG	3 cut(s)	215, 497, 500
BseXI	GCAGC	2 cut(s)	208, 753
Bsh1236I	CGCG	1 cut(s)	544
Bsh1285I	CGRYCG	1 cut(s)	622
BshFI	GGCC	4 cut(s)	344, 572, 587, 628
BshNI	GGYRCC	4 cut(s)	45, 596, 667, 680
BsiEI	CGRYCG	1 cut(s)	622
BsiHKAI	GWGCWC	1 cut(s)	438
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	3 cut(s)	600, 665, 678
BslI	CCNNNNNNNGG	5 cut(s)	314, 315, 677, 737, 801
BsmAI	GTCTC	1 cut(s)	387
BsmI	GAATGC	1 cut(s)	206
BsnI	GGCC	4 cut(s)	344, 572, 587, 628
Bso31I	GGTCTC	1 cut(s)	387
BsoBI	CYCGRG	1 cut(s)	431
Bsp119I	TTCGAA	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp143I	GATC	5 cut(s)	94, 159, 283, 419, 472
Bsp19I	CCATGG	1 cut(s)	458
BspACI	CCGC	5 cut(s)	219, 405, 463, 542, 556
BspANI	GGCC	4 cut(s)	344, 572, 587, 628
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	544
BspLI	GGNNCC	5 cut(s)	47, 598, 669, 682, 717
BspPI	GGATC	1 cut(s)	291
BspQI	GCTCTTC	1 cut(s)	414
BspT104I	TTCGAA	1 cut(s)	11
BspT107I	GGYRCC	4 cut(s)	45, 596, 667, 680
BspTNI	GGTCTC	1 cut(s)	387
BsrBI	CCGCTC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	769
BsrFI	RCCGGY	2 cut(s)	599, 664
BsrI	ACTGG	1 cut(s)	719
BssAI	RCCGGY	2 cut(s)	599, 664
BssECI	CCNNGG	4 cut(s)	377, 458, 573, 592
BssMI	GATC	5 cut(s)	94, 159, 283, 419, 472
BssNI	GRCGYC	2 cut(s)	606, 753
BssSI	CACGAG	1 cut(s)	108
BssT1I	CCWWGG	2 cut(s)	458, 573
Bst2BI	CACGAG	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	379, 855
Bst4CI	ACNGT	1 cut(s)	796
Bst6I	CTCTTC	4 cut(s)	414, 664, 732, 827
BstACI	GRCGYC	2 cut(s)	606, 753
BstBAI	YACGTR	1 cut(s)	789
BstBI	TTCGAA	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	666
BstDEI	CTNAG	1 cut(s)	189
BstDSI	CCRYGG	2 cut(s)	458, 592
BstF5I	GGATG	2 cut(s)	43, 810
BstFNI	CGCG	1 cut(s)	544
BstHHI	GCGC	1 cut(s)	546
BstKTI	GATC	5 cut(s)	97, 162, 286, 422, 475
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	5 cut(s)	94, 159, 283, 419, 472
BstMCI	CGRYCG	1 cut(s)	622
BstMWI	GCNNNNNNNGC	5 cut(s)	185, 541, 584, 750, 759
BstNI	CCWGG	2 cut(s)	379, 855
BstSCI	CCNGG	2 cut(s)	377, 853
BstUI	CGCG	1 cut(s)	544
BstV1I	GCAGC	2 cut(s)	208, 753
BstX2I	RGATCY	2 cut(s)	419, 472
BstYI	RGATCY	2 cut(s)	419, 472
BsuRI	GGCC	4 cut(s)	344, 572, 587, 628
BtgI	CCRYGG	2 cut(s)	458, 592
BtsCI	GGATG	2 cut(s)	43, 810
Cac8I	GCNNGC	1 cut(s)	666
CfoI	GCGC	1 cut(s)	546
Cfr10I	RCCGGY	2 cut(s)	599, 664
Cfr13I	GGNCC	1 cut(s)	792
CseI	GACGC	2 cut(s)	614, 742
Csp6I	GTAC	2 cut(s)	26, 516
CviAII	CATG	6 cut(s)	50, 64, 166, 280, 287, 459
CviQI	GTAC	2 cut(s)	26, 516
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	5 cut(s)	96, 161, 285, 421, 474
DpnII	GATC	5 cut(s)	94, 159, 283, 419, 472
EaeI	YGGCCR	1 cut(s)	626
Eam1104I	CTCTTC	4 cut(s)	414, 664, 732, 827
EarI	CTCTTC	4 cut(s)	414, 664, 732, 827
Ecl136II	GAGCTC	1 cut(s)	436
Eco130I	CCWWGG	2 cut(s)	458, 573
Eco147I	AGGCCT	1 cut(s)	587
Eco24I	GRGCYC	1 cut(s)	438
Eco31I	GGTCTC	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	792
Eco53kI	GAGCTC	1 cut(s)	436
Eco88I	CYCGRG	1 cut(s)	431
EcoICRI	GAGCTC	1 cut(s)	436
EcoRII	CCWGG	2 cut(s)	377, 853
EcoT14I	CCWWGG	2 cut(s)	458, 573
EcoT38I	GRGCYC	1 cut(s)	438
ErhI	CCWWGG	2 cut(s)	458, 573
FaeI	CATG	6 cut(s)	53, 67, 169, 283, 290, 462
FatI	CATG	6 cut(s)	49, 63, 165, 279, 286, 458
FauI	CCCGC	2 cut(s)	412, 549
Fnu4HI	GCNGC	3 cut(s)	222, 464, 742
FokI	GGATG	2 cut(s)	50, 817
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	3 cut(s)	222, 464, 742
FspBI	CTAG	1 cut(s)	417
GlaI	GCGC	1 cut(s)	545
GluI	GCNGC	3 cut(s)	222, 464, 742
HaeIII	GGCC	4 cut(s)	344, 572, 587, 628
HapII	CCGG	3 cut(s)	600, 665, 678
HgaI	GACGC	2 cut(s)	614, 742
HhaI	GCGC	1 cut(s)	546
Hin1I	GRCGYC	2 cut(s)	606, 753
Hin1II	CATG	6 cut(s)	53, 67, 169, 283, 290, 462
Hin6I	GCGC	1 cut(s)	544
HinP1I	GCGC	1 cut(s)	544
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	2 cut(s)	241, 373
HpaII	CCGG	3 cut(s)	600, 665, 678
HphI	GGTGA	1 cut(s)	646
Hpy166II	GTNNAC	4 cut(s)	118, 277, 293, 792
Hpy188I	TCNGA	5 cut(s)	192, 448, 470, 565, 736
Hpy188III	TCNNGA	2 cut(s)	245, 417
Hpy8I	GTNNAC	4 cut(s)	118, 277, 293, 792
Hpy99I	CGWCG	4 cut(s)	569, 608, 758, 848
HpyAV	CCTTC	3 cut(s)	328, 500, 731
HpyCH4III	ACNGT	1 cut(s)	796
HpyCH4IV	ACGT	1 cut(s)	788
HpyCH4V	TGCA	5 cut(s)	53, 59, 143, 224, 781
HpyF10VI	GCNNNNNNNGC	5 cut(s)	185, 541, 584, 750, 759
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	788
Hsp92I	GRCGYC	2 cut(s)	606, 753
Hsp92II	CATG	6 cut(s)	53, 67, 169, 283, 290, 462
HspAI	GCGC	1 cut(s)	544
KroI	GCCGGC	1 cut(s)	664
KroNI	GCCGGC	1 cut(s)	666
Kzo9I	GATC	5 cut(s)	94, 159, 283, 419, 472
LguI	GCTCTTC	1 cut(s)	414
LmnI	GCTCC	2 cut(s)	133, 448
LpnPI	CCDG	8 cut(s)	364, 391, 613, 678, 691, 732, 760, 840
Lsp1109I	GCAGC	2 cut(s)	208, 753
LweI	GCATC	2 cut(s)	530, 795
MaeI	CTAG	1 cut(s)	417
MaeII	ACGT	1 cut(s)	788
MalI	GATC	5 cut(s)	96, 161, 285, 421, 474
MbiI	CCGCTC	1 cut(s)	407
MboI	GATC	5 cut(s)	94, 159, 283, 419, 472
MflI	RGATCY	2 cut(s)	419, 472
MhlI	GDGCHC	1 cut(s)	438
MlsI	TGGCCA	1 cut(s)	628
MluCI	AATT	3 cut(s)	78, 137, 859
MluNI	TGGCCA	1 cut(s)	628
MmeI	TCCRAC	1 cut(s)	588
Mox20I	TGGCCA	1 cut(s)	628
MroNI	GCCGGC	1 cut(s)	664
MroXI	GAANNNNTTC	1 cut(s)	357
MscI	TGGCCA	1 cut(s)	628
MseI	TTAA	3 cut(s)	77, 87, 363
MslI	CAYNNNNRTG	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	628
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	3 cut(s)	600, 665, 678
MspR9I	CCNGG	2 cut(s)	379, 855
Mva1269I	GAATGC	1 cut(s)	206
MvaI	CCWGG	2 cut(s)	379, 855
MvnI	CGCG	1 cut(s)	544
MwoI	GCNNNNNNNGC	5 cut(s)	185, 541, 584, 750, 759
NaeI	GCCGGC	1 cut(s)	666
NcoI	CCATGG	1 cut(s)	458
NdeII	GATC	5 cut(s)	94, 159, 283, 419, 472
NgoMIV	GCCGGC	1 cut(s)	664
NlaIII	CATG	6 cut(s)	53, 67, 169, 283, 290, 462
NlaIV	GGNNCC	5 cut(s)	47, 598, 669, 682, 717
NmeAIII	GCCGAG	1 cut(s)	676
NspV	TTCGAA	1 cut(s)	11
PaeR7I	CTCGAG	1 cut(s)	431
PceI	AGGCCT	1 cut(s)	587
PciSI	GCTCTTC	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	3 cut(s)	600, 628, 668
PctI	GAATGC	1 cut(s)	206
PdiI	GCCGGC	1 cut(s)	666
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	241, 373
PkrI	GCNGC	3 cut(s)	223, 465, 743
Ppu21I	YACGTR	1 cut(s)	789
PshBI	ATTAAT	1 cut(s)	77
Psp124BI	GAGCTC	1 cut(s)	438
Psp6I	CCWGG	2 cut(s)	377, 853
PspGI	CCWGG	2 cut(s)	377, 853
PspN4I	GGNNCC	5 cut(s)	47, 598, 669, 682, 717
PspPI	GGNCC	1 cut(s)	792
PspXI	VCTCGAGB	1 cut(s)	431
PsuI	RGATCY	2 cut(s)	419, 472
RsaI	GTAC	2 cut(s)	27, 517
RsaNI	GTAC	2 cut(s)	26, 516
RseI	CAYNNNNRTG	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	438
SapI	GCTCTTC	1 cut(s)	414
SaqAI	TTAA	3 cut(s)	77, 87, 363
SatI	GCNGC	3 cut(s)	222, 464, 742
Sau3AI	GATC	5 cut(s)	94, 159, 283, 419, 472
Sau96I	GGNCC	1 cut(s)	792
ScrFI	CCNGG	2 cut(s)	379, 855
SduI	GDGCHC	1 cut(s)	438
SfaNI	GCATC	2 cut(s)	530, 795
Sfr274I	CTCGAG	1 cut(s)	431
SfuI	TTCGAA	1 cut(s)	11
SgrAI	CRCCGGYG	1 cut(s)	599
SinI	GGWCC	1 cut(s)	792
SlaI	CTCGAG	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	2 cut(s)	431, 581
SmoI	CTYRAG	2 cut(s)	431, 581
Sse9I	AATT	3 cut(s)	78, 137, 859
SseBI	AGGCCT	1 cut(s)	587
SsiI	CCGC	5 cut(s)	219, 405, 463, 542, 556
SspI	AATATT	1 cut(s)	75
SspMI	CTAG	1 cut(s)	417
SstI	GAGCTC	1 cut(s)	438
StuI	AGGCCT	1 cut(s)	587
StyD4I	CCNGG	2 cut(s)	377, 853
StyI	CCWWGG	2 cut(s)	458, 573
TaaI	ACNGT	1 cut(s)	796
TaiI	ACGT	1 cut(s)	791
TaqI	TCGA	4 cut(s)	11, 266, 432, 644
TaqII	GACCGA	1 cut(s)	608
TasI	AATT	3 cut(s)	78, 137, 859
TauI	GCSGC	1 cut(s)	466
TfiI	GAWTC	2 cut(s)	241, 373
Tru1I	TTAA	3 cut(s)	77, 87, 363
Tru9I	TTAA	3 cut(s)	77, 87, 363
TseI	GCWGC	2 cut(s)	221, 741
TspDTI	ATGAA	3 cut(s)	154, 199, 705
TspGWI	ACGGA	1 cut(s)	503
VpaK11BI	GGWCC	1 cut(s)	792
VspI	ATTAAT	1 cut(s)	77
XbaI	TCTAGA	1 cut(s)	416
XhoI	CTCGAG	1 cut(s)	431
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.