Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001477

Physical Location & Seq

Genomic Coordinates Reverse (-)

52126886 .. 52134406

Gene Structure 7521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG368300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCGGTGGCGATCACTCTCGTCGCGCCTCATACACCGCTTCTCTGATGAAGCCAAGGTTCTCAAGGCCTCCCGCAGCACGGGCGACGCCAAATGGCTCGGTCTGTGGCCACGGAGAAACTCCATGGACTACTACCACCTCCTCGTCAACACCGACTTCCAGCGCCAGAAGATGAAGCTCGCCGCTGCCGCCTCTCCTCGGCATCATCAGTTCCAGTTCCTTTTCCCCTCCGAAGGCAGCAACACGGCGTCGTTTGGCAATTACTTCGGCTTATCCAATGTAGAGAGGGATGAGGGGAAGTCTGGTTTTTTTACTTCAGAAGAATTAGTTATTTGCAAACAAGCTGAGCCAAGTCTTCTCATTTTTATAGTCAAGTTGAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

128

Amino Acids

14.73

Weight (kDa)

9.86

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10080
fragaria_vesca	FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650
malus_domestica	MD01G1024100.v1.1 MD15G1362800.v1.1
prunus_persica	Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.6G179100_v2.0.a1
pyrus_communis	pycom01g05180 pycom15g32510
rosa_chinensis	RchiOBHm_Chr1g0350111 RchiOBHm_Chr2g0115521 RchiOBHm_Chr2g0129991
rosa_laevigata	RLG00000005996 RLG00000006248 RLG00000015274 RLG00000018190 RLG00000030771
rosa_multiflora	Rmu_sc0005625.1_g000012 Rmu_sc0007210.1_g000001 Rmu_sc0009900.1_g000009 Rmu_sc0021224.1_g000001 Rmu_sc0039462.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064010 Rroxscaffold_1G00064020 Rroxscaffold_2G00123530 Rroxscaffold_2G00128130 Rroxscaffold_2G00129010 Rroxscaffold_3G00229700 Rroxscaffold_5G00344250 Rroxscaffold_7G00197080 Rroxscaffold_7G00197100 Rroxscaffold_7G00217690
rosa_rugosa	Rorug02G0197300 Rorug02G0197300 Rorug02G0197300
rosa_samantha	Rh1CG101200 Rh1CG101300 Rh2AG254900 Rh2AG342200 Rh2BG265700 Rh2CG260100 Rh2DG263000 Rh2DG368300 Rh2DG576100
rosa_wichuraiana	Rw2G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	25
AciI	CCGC	5 cut(s)	4, 37, 73, 183, 189
AcoI	YGGCCR	1 cut(s)	107
AcuI	CTGAAG	1 cut(s)	300
AcyI	GRCGYC	2 cut(s)	87, 248
AfiI	CCNNNNNNNGG	3 cut(s)	79, 198, 233
AgsI	TTSAA	1 cut(s)	379
AluBI	AGCT	2 cut(s)	178, 344
AluI	AGCT	2 cut(s)	178, 344
AoxI	GGCC	2 cut(s)	66, 107
ApeKI	GCWGC	3 cut(s)	75, 185, 237
AspLEI	GCGC	2 cut(s)	27, 165
BalI	TGGCCA	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	347
BbvI	GCAGC	3 cut(s)	87, 172, 249
BceAI	ACGGC	1 cut(s)	261
BcgI	CGANNNNNNTGC	2 cut(s)	247, 281
BfoI	RGCGCY	1 cut(s)	166
BisI	GCNGC	5 cut(s)	76, 183, 186, 189, 238
BlpI	GCTNAGC	1 cut(s)	345
BlsI	GCNGC	5 cut(s)	77, 184, 187, 190, 239
BmsI	GCATC	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	347
Bpu1102I	GCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	47
BsaHI	GRCGYC	2 cut(s)	87, 248
BsaJI	CCNNGG	4 cut(s)	54, 110, 123, 197
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 198, 233
Bse1I	ACTGG	1 cut(s)	214
BseDI	CCNNGG	4 cut(s)	54, 110, 123, 197
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	3 cut(s)	79, 198, 233
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	2 cut(s)	131, 186
BseXI	GCAGC	3 cut(s)	87, 172, 249
Bsh1236I	CGCG	1 cut(s)	25
BshFI	GGCC	2 cut(s)	68, 109
BslI	CCNNNNNNNGG	3 cut(s)	79, 198, 233
BsnI	GGCC	2 cut(s)	68, 109
Bsp143I	GATC	1 cut(s)	11
Bsp1720I	GCTNAGC	1 cut(s)	345
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	5 cut(s)	4, 37, 73, 183, 189
BspANI	GGCC	2 cut(s)	68, 109
BspCNI	CTCAG	1 cut(s)	337
BspFNI	CGCG	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	4 cut(s)	54, 110, 123, 197
BssMI	GATC	1 cut(s)	11
BssNI	GRCGYC	2 cut(s)	87, 248
BssT1I	CCWWGG	2 cut(s)	54, 123
BstACI	GRCGYC	2 cut(s)	87, 248
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	345
BstDSI	CCRYGG	2 cut(s)	110, 123
BstF5I	GGATG	1 cut(s)	295
BstFNI	CGCG	1 cut(s)	25
BstH2I	RGCGCY	1 cut(s)	166
BstHHI	GCGC	2 cut(s)	27, 165
BstKTI	GATC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	11
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 188
BstUI	CGCG	1 cut(s)	25
BstV1I	GCAGC	3 cut(s)	87, 172, 249
BstV2I	GAAGAC	1 cut(s)	347
BsuRI	GGCC	2 cut(s)	68, 109
BtgI	CCRYGG	2 cut(s)	110, 123
BtsCI	GGATG	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	180
CfoI	GCGC	2 cut(s)	27, 165
CseI	GACGC	2 cut(s)	95, 237
CviAII	CATG	1 cut(s)	124
CviJI	RGCY	9 cut(s)	53, 68, 97, 109, 178, 270, 344, 349, 383
CviKI_1	RGCY	9 cut(s)	53, 68, 97, 109, 178, 270, 344, 349, 383
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
EaeI	YGGCCR	1 cut(s)	107
Eco130I	CCWWGG	2 cut(s)	54, 123
Eco147I	AGGCCT	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	300
EcoT14I	CCWWGG	2 cut(s)	54, 123
ErhI	CCWWGG	2 cut(s)	54, 123
FaeI	CATG	1 cut(s)	127
FaiI	YATR	3 cut(s)	32, 125, 368
FatI	CATG	1 cut(s)	123
FauI	CCCGC	1 cut(s)	80
Fnu4HI	GCNGC	5 cut(s)	76, 183, 186, 189, 238
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	5 cut(s)	76, 183, 186, 189, 238
GlaI	GCGC	2 cut(s)	26, 164
GluI	GCNGC	5 cut(s)	76, 183, 186, 189, 238
HaeII	RGCGCY	1 cut(s)	166
HaeIII	GGCC	2 cut(s)	68, 109
HgaI	GACGC	2 cut(s)	95, 237
HhaI	GCGC	2 cut(s)	27, 165
Hin1I	GRCGYC	2 cut(s)	87, 248
Hin1II	CATG	1 cut(s)	127
Hin6I	GCGC	2 cut(s)	25, 163
HinP1I	GCGC	2 cut(s)	25, 163
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	3 cut(s)	46, 232, 319
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	3 cut(s)	25, 89, 253
HpyAV	CCTTC	2 cut(s)	227, 373
HpyCH4V	TGCA	1 cut(s)	336
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 188
HpyF3I	CTNAG	1 cut(s)	345
Hsp92I	GRCGYC	2 cut(s)	87, 248
Hsp92II	CATG	1 cut(s)	127
HspAI	GCGC	2 cut(s)	25, 163
Kzo9I	GATC	1 cut(s)	11
LpnPI	CCDG	4 cut(s)	173, 179, 227, 288
Lsp1109I	GCAGC	3 cut(s)	87, 172, 249
LweI	GCATC	1 cut(s)	211
MalI	GATC	1 cut(s)	13
MboI	GATC	1 cut(s)	11
MboII	GAAGA	3 cut(s)	181, 332, 347
MlsI	TGGCCA	1 cut(s)	109
MluCI	AATT	2 cut(s)	259, 323
MluNI	TGGCCA	1 cut(s)	109
MnlI	CCTC	9 cut(s)	38, 79, 149, 152, 202, 207, 238, 279, 286
Mox20I	TGGCCA	1 cut(s)	109
MscI	TGGCCA	1 cut(s)	109
Msp20I	TGGCCA	1 cut(s)	109
MspA1I	CMGCKG	1 cut(s)	185
MvnI	CGCG	1 cut(s)	25
MwoI	GCNNNNNNNGC	2 cut(s)	81, 188
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	1 cut(s)	11
NlaIII	CATG	1 cut(s)	127
NmeAIII	GCCGAG	1 cut(s)	178
PceI	AGGCCT	1 cut(s)	68
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PkrI	GCNGC	5 cut(s)	77, 184, 187, 190, 239
SatI	GCNGC	5 cut(s)	76, 183, 186, 189, 238
Sau3AI	GATC	1 cut(s)	11
SetI	ASST	4 cut(s)	60, 141, 180, 346
SfaNI	GCATC	1 cut(s)	211
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	2 cut(s)	259, 323
SseBI	AGGCCT	1 cut(s)	68
SsiI	CCGC	5 cut(s)	4, 37, 73, 183, 189
StuI	AGGCCT	1 cut(s)	68
StyI	CCWWGG	2 cut(s)	54, 123
TaqII	GACCGA	1 cut(s)	89
TasI	AATT	2 cut(s)	259, 323
TauI	GCSGC	2 cut(s)	185, 191
TseI	GCWGC	3 cut(s)	75, 185, 237
TspDTI	ATGAA	2 cut(s)	63, 188
TspGWI	ACGGA	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.