Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001477

Physical Location & Seq

Genomic Coordinates Reverse (-)

27887232 .. 27904361

Gene Structure 17130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG260100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1632 bp

ATGGCGGCTCATCGATCTCTGCTCGTTCTCCTTCCCCTACTCTCTCTCCTCCTCCGTAATGCGGCCGCGATTACGCTCTCGTCGCGCCTCATACACCGCTTCTCCGACGAGGCCAAGGCTCTCAAGGCCTCCCGCAGCACCGGCGACGCCAAATGGCTCGGTCGGTGGCCGCGGAGAAACTCCATGGACTACTATCACCTCCTCGCCAACACCGACTTCCAGCGCCAGAAGATGAAGCTCGGCACCTCTCGTCATCAGTTCCAGTTCCTCTTCCCCTCCGAAGGCAGCAACACGGCGTCGTTTGGCAATGACTTCGGCTGGTTGCATTATACGTGGATTGATATAGGGACGCCGAATGTTTCGTTTCTGGTGGCATTGGATACTGGAAGTGATCTGCTTTGGGTTCCATGTGATTGCCTACAATGCGCTCCCCTATCAGCTACTCACTATAGTACTCTGGATAGAGATTTGAACGAGTATAGTCCGTCTGGGTCAAACACCAGCAAGCATGTGTCTTGCAGCCATGAGTTATGTACAGCTGGTCCAAACTGCAAGGCCCCCAAGCAGCCGTGCCCTTACACTATTGAATACTTCTCGGAAAATACATCGAGTTCTGGATTGCTCGTGGAGGATATATTACATCTTGTAGCGGGGGGTAATGGTGTATCAAACAATTCTATTCAGGCCCCTGTGATCATAGGATGTGGTATGAAGCAAAGTGGTGGGTACCTGGATGGCATTGCTCCTGATGGTCTTATGGGTTTAGGACTTGGAGAGGTTTCAGTTCCTAGTTTCCTTGCTAAAGCAGGATTGATCATAAACTCTTTCTCAATGTGCGTGGATGAGGAAGGTTCTGGGAGAATATTTTTTGGGGACCAGGGACCAAATACTCAACAGTCTACATCCTTCTTGCCCTCAAATGGAAACTATGAAACCTACATCGTTGGTGTGGAAGCATGTTGTATTGGAAATTCTTGTCTTAAGCAGACAAGCTTCAGGGCATTGGTTGATACTGGGACATCATTTACATTCCTTCCAGAAGAAGTGTATGATAAAATTGCAGTGGAGTTTGATAAGCGAGTGAATGCGACAATCACGAGTTATGAAGGATCTCCATGGAAGTACTGCTATAATACCAGTCCTCAAGATTTGCTAAAAGTGCCTTCTGTGACGCTTATGTTCCTGGCAAACAACAGTTTTGTGGTCCATGACCCCGTTTTCCCGATATATGATAATCAGGGAGTCGTTGGAATTTGTTTGGCCATACAACCAGCAGATGGTGATATTGGAACGATTGGACAGAACTTCATGACCGGATATCGGACAGTATTTGATAGGGAGAATATGAAGCTAGGCTGGTCTCGCTCAAAATGTCAAGATCTTGGTGATGCTAAGAGTATGCCCCTAACACCTTCTCCAAAGGGCACACCACCAATTCCATTGCCAACAACTGAGCAGCAGAGCACTCCTGGTGGGTTTGCTCCTGCTGTTGCTGGAAGAGCTCCGCCGAAAGCATCAGCTGCATCTAGTCGGCCAAGGTTAAAGTCTTCCCTCATTGCTACGCTCCTGCTGACCAACCAAGGCCCCAAACAGCTCAGAATTAAGCGACCCCAACCAGTCGACGACGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

543

Amino Acids

58.86

Weight (kDa)

6.38

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	110 - 292	1.2e-36	Xylanase inhibitor N-terminal
Asp	PF00026	110 - 453	7.5e-22	Eukaryotic aspartyl protease
TAXi_C	PF14541	329 - 454	5.2e-13	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10080
fragaria_vesca	FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650
malus_domestica	MD01G1024100.v1.1 MD15G1362800.v1.1
prunus_persica	Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.6G179100_v2.0.a1
pyrus_communis	pycom01g05180 pycom15g32510
rosa_chinensis	RchiOBHm_Chr1g0350111 RchiOBHm_Chr2g0115521 RchiOBHm_Chr2g0129991
rosa_laevigata	RLG00000005996 RLG00000006248 RLG00000015274 RLG00000018190 RLG00000030771
rosa_multiflora	Rmu_sc0005625.1_g000012 Rmu_sc0007210.1_g000001 Rmu_sc0009900.1_g000009 Rmu_sc0021224.1_g000001 Rmu_sc0039462.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064010 Rroxscaffold_1G00064020 Rroxscaffold_2G00123530 Rroxscaffold_2G00128130 Rroxscaffold_2G00129010 Rroxscaffold_3G00229700 Rroxscaffold_5G00344250 Rroxscaffold_7G00197080 Rroxscaffold_7G00197100 Rroxscaffold_7G00217690
rosa_rugosa	Rorug02G0197300 Rorug02G0197300 Rorug02G0197300
rosa_samantha	Rh1CG101200 Rh1CG101300 Rh2AG254900 Rh2AG342200 Rh2BG265700 Rh2CG260100 Rh2DG263000 Rh2DG368300 Rh2DG576100
rosa_wichuraiana	Rw2G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	726
AccB1I	GGYRCC	2 cut(s)	242, 726
AccB7I	CCANNNNNTGG	1 cut(s)	1277
AccI	GTMKAC	2 cut(s)	899, 1620
AccII	CGCG	3 cut(s)	68, 85, 172
AciI	CCGC	9 cut(s)	5, 62, 66, 97, 133, 170, 172, 650, 1505
AclWI	GGATC	1 cut(s)	1117
AcoI	YGGCCR	4 cut(s)	63, 167, 1260, 1532
AcsI	RAATTY	2 cut(s)	970, 1251
AcuI	CTGAAG	1 cut(s)	979
AcyI	GRCGYC	3 cut(s)	147, 296, 350
AfaI	GTAC	4 cut(s)	454, 535, 728, 1124
AfiI	CCNNNNNNNGG	5 cut(s)	61, 281, 920, 1277, 1320
AflII	CTTAAG	1 cut(s)	980
AgsI	TTSAA	2 cut(s)	472, 587
AjnI	CCWGG	4 cut(s)	729, 876, 1182, 1468
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	8 cut(s)	238, 440, 539, 993, 1351, 1502, 1520, 1594
AluI	AGCT	8 cut(s)	238, 440, 539, 993, 1351, 1502, 1520, 1594
Alw21I	GWGCWC	2 cut(s)	1466, 1504
Alw26I	GTCTC	1 cut(s)	1365
AlwI	GGATC	1 cut(s)	1117
AoxI	GGCC	9 cut(s)	63, 111, 126, 167, 555, 684, 1260, 1532, 1582
ApeKI	GCWGC	6 cut(s)	135, 285, 519, 565, 1456, 1520
ApoI	RAATTY	2 cut(s)	970, 1251
Asp718I	GGTACC	1 cut(s)	726
AspLEI	GCGC	3 cut(s)	87, 225, 428
AspS9I	GGNCC	7 cut(s)	542, 556, 685, 874, 881, 1204, 1583
AsuHPI	GGTGA	3 cut(s)	188, 1292, 1397
AvaII	GGWCC	4 cut(s)	542, 874, 881, 1204
BaeGI	GKGCMC	2 cut(s)	575, 1427
BalI	TGGCCA	1 cut(s)	1262
BanI	GGYRCC	2 cut(s)	242, 726
BanII	GRGCYC	1 cut(s)	1504
BauI	CACGAG	2 cut(s)	623, 1096
BbsI	GAAGAC	1 cut(s)	1539
Bbv12I	GWGCWC	2 cut(s)	1466, 1504
BbvI	GCAGC	6 cut(s)	147, 297, 531, 577, 1468, 1507
BccI	CCATC	3 cut(s)	728, 743, 1271
BceAI	ACGGC	2 cut(s)	309, 553
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciT130I	CCWGG	4 cut(s)	731, 878, 1184, 1470
BciVI	GTATCC	1 cut(s)	373
BclI	TGATCA	2 cut(s)	693, 813
BcoDI	GTCTC	1 cut(s)	1365
BfaI	CTAG	3 cut(s)	789, 1352, 1527
BfmI	CTRYAG	1 cut(s)	448
BfoI	RGCGCY	1 cut(s)	226
BfrI	CTTAAG	1 cut(s)	980
BfuI	GTATCC	1 cut(s)	373
BglII	AGATCT	1 cut(s)	1378
BmcAI	AGTACT	2 cut(s)	454, 1124
Bme1390I	CCNGG	4 cut(s)	731, 878, 1184, 1470
Bme18I	GGWCC	4 cut(s)	542, 874, 881, 1204
BmgT120I	GGNCC	7 cut(s)	542, 556, 685, 874, 881, 1204, 1583
BmiI	GGNNCC	8 cut(s)	244, 405, 558, 687, 728, 875, 882, 1585
BmrFI	CCNGG	4 cut(s)	731, 878, 1184, 1470
BmrI	ACTGGG	1 cut(s)	1023
BmsI	GCATC	3 cut(s)	1378, 1523, 1532
BmuI	ACTGGG	1 cut(s)	1023
BpiI	GAAGAC	1 cut(s)	1539
BpuEI	CTTGAG	2 cut(s)	107, 1128
Bsa29I	ATCGAT	1 cut(s)	13
BsaAI	YACGTR	1 cut(s)	333
BsaHI	GRCGYC	3 cut(s)	147, 296, 350
BsaI	GGTCTC	1 cut(s)	1365
BsaJI	CCNNGG	7 cut(s)	114, 170, 183, 877, 1115, 1535, 1579
BsaWI	WCCGGW	1 cut(s)	1313
BsaXI	ACNNNNNCTCC	6 cut(s)	30, 60, 86, 116, 1399, 1429
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 281, 920, 1277, 1320
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	5 cut(s)	262, 388, 1018, 1137, 1616
Bse3DI	GCAATG	4 cut(s)	313, 738, 1439, 1554
BseBI	CCWGG	4 cut(s)	731, 878, 1184, 1470
BseCI	ATCGAT	1 cut(s)	13
BseDI	CCNNGG	7 cut(s)	114, 170, 183, 877, 1115, 1535, 1579
BseGI	GGATG	4 cut(s)	707, 739, 847, 902
BseLI	CCNNNNNNNGG	5 cut(s)	61, 281, 920, 1277, 1320
BseMI	GCAATG	4 cut(s)	313, 738, 1439, 1554
BseMII	CTCAG	2 cut(s)	1443, 1609
BseNI	ACTGG	5 cut(s)	262, 388, 1018, 1137, 1616
BseRI	GAGGAG	3 cut(s)	38, 41, 191
BseSI	GKGCMC	2 cut(s)	575, 1427
BseX3I	CGGCCG	1 cut(s)	63
BseXI	GCAGC	6 cut(s)	147, 297, 531, 577, 1468, 1507
Bsh1236I	CGCG	3 cut(s)	68, 85, 172
Bsh1285I	CGRYCG	2 cut(s)	66, 163
BshFI	GGCC	9 cut(s)	65, 113, 128, 169, 557, 686, 1262, 1534, 1584
BshNI	GGYRCC	2 cut(s)	242, 726
BshVI	ATCGAT	1 cut(s)	13
BsiEI	CGRYCG	2 cut(s)	66, 163
BsiHKAI	GWGCWC	2 cut(s)	1466, 1504
BsiSI	CCGG	2 cut(s)	141, 1314
BslFI	GGGAC	4 cut(s)	361, 887, 894, 1030
BslI	CCNNNNNNNGG	5 cut(s)	61, 281, 920, 1277, 1320
BsmAI	GTCTC	1 cut(s)	1365
BsmFI	GGGAC	4 cut(s)	361, 887, 894, 1030
BsmI	GAATGC	1 cut(s)	1090
BsnI	GGCC	9 cut(s)	65, 113, 128, 169, 557, 686, 1262, 1534, 1584
Bso31I	GGTCTC	1 cut(s)	1365
Bsp1286I	GDGCHC	4 cut(s)	575, 1427, 1466, 1504
Bsp1407I	TGTACA	1 cut(s)	533
Bsp143I	GATC	6 cut(s)	14, 391, 693, 813, 1109, 1378
Bsp19I	CCATGG	2 cut(s)	183, 1115
BspACI	CCGC	9 cut(s)	5, 62, 66, 97, 133, 170, 172, 650, 1505
BspANI	GGCC	9 cut(s)	65, 113, 128, 169, 557, 686, 1262, 1534, 1584
BspCNI	CTCAG	2 cut(s)	1444, 1608
BspDI	ATCGAT	1 cut(s)	13
BspFNI	CGCG	3 cut(s)	68, 85, 172
BspHI	TCATGA	1 cut(s)	1308
BspLI	GGNNCC	8 cut(s)	244, 405, 558, 687, 728, 875, 882, 1585
BspPI	GGATC	1 cut(s)	1117
BspQI	GCTCTTC	1 cut(s)	1492
BspT107I	GGYRCC	2 cut(s)	242, 726
BspTI	CTTAAG	1 cut(s)	980
BspTNI	GGTCTC	1 cut(s)	1365
BsrDI	GCAATG	4 cut(s)	313, 738, 1439, 1554
BsrFI	RCCGGY	1 cut(s)	140
BsrGI	TGTACA	1 cut(s)	533
BsrI	ACTGG	5 cut(s)	262, 388, 1018, 1137, 1616
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	7 cut(s)	114, 170, 183, 877, 1115, 1535, 1579
BssMI	GATC	6 cut(s)	14, 391, 693, 813, 1109, 1378
BssNI	GRCGYC	3 cut(s)	147, 296, 350
BssSI	CACGAG	2 cut(s)	623, 1096
BssT1I	CCWWGG	5 cut(s)	114, 183, 1115, 1535, 1579
Bst2BI	CACGAG	2 cut(s)	623, 1096
Bst2UI	CCWGG	4 cut(s)	731, 878, 1184, 1470
Bst4CI	ACNGT	3 cut(s)	897, 1196, 1327
Bst6I	CTCTTC	2 cut(s)	275, 1492
BstACI	GRCGYC	3 cut(s)	147, 296, 350
BstAFI	CTTAAG	1 cut(s)	980
BstAPI	GCANNNNNTGC	1 cut(s)	1520
BstAUI	TGTACA	1 cut(s)	533
BstBAI	YACGTR	1 cut(s)	333
BstC8I	GCNNGC	1 cut(s)	506
BstDEI	CTNAG	3 cut(s)	1392, 1452, 1595
BstDSI	CCRYGG	3 cut(s)	170, 183, 1115
BstF5I	GGATG	4 cut(s)	707, 739, 847, 902
BstFNI	CGCG	3 cut(s)	68, 85, 172
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	3 cut(s)	87, 225, 428
BstKTI	GATC	6 cut(s)	17, 394, 696, 816, 1112, 1381
BstMAI	GTCTC	1 cut(s)	1365
BstMBI	GATC	6 cut(s)	14, 391, 693, 813, 1109, 1378
BstMCI	CGRYCG	2 cut(s)	66, 163
BstMWI	GCNNNNNNNGC	8 cut(s)	82, 125, 141, 423, 1159, 1362, 1499, 1520
BstNI	CCWGG	4 cut(s)	731, 878, 1184, 1470
BstNSI	RCATGY	2 cut(s)	512, 960
BstSCI	CCNGG	4 cut(s)	729, 876, 1182, 1468
BstSFI	CTRYAG	1 cut(s)	448
BstSLI	GKGCMC	2 cut(s)	575, 1427
BstUI	CGCG	3 cut(s)	68, 85, 172
BstV1I	GCAGC	6 cut(s)	147, 297, 531, 577, 1468, 1507
BstV2I	GAAGAC	1 cut(s)	1539
BstX2I	RGATCY	2 cut(s)	1109, 1378
BstYI	RGATCY	2 cut(s)	1109, 1378
BstZI	CGGCCG	1 cut(s)	63
Bsu15I	ATCGAT	1 cut(s)	13
BsuI	GTATCC	1 cut(s)	373
BsuRI	GGCC	9 cut(s)	65, 113, 128, 169, 557, 686, 1262, 1534, 1584
BsuTUI	ATCGAT	1 cut(s)	13
BtgI	CCRYGG	3 cut(s)	170, 183, 1115
BtsCI	GGATG	4 cut(s)	707, 739, 847, 902
BtsI	GCAGTG	1 cut(s)	1068
BtsIMutI	CAGTG	1 cut(s)	1068
Cac8I	GCNNGC	1 cut(s)	506
CciI	TCATGA	1 cut(s)	1308
CciNI	GCGGCCGC	1 cut(s)	63
CfoI	GCGC	3 cut(s)	87, 225, 428
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	7 cut(s)	542, 556, 685, 874, 881, 1204, 1583
Cfr42I	CCGCGG	1 cut(s)	173
ClaI	ATCGAT	1 cut(s)	13
CseI	GACGC	4 cut(s)	155, 285, 358, 1180
Csp6I	GTAC	4 cut(s)	453, 534, 727, 1123
CspCI	CAANNNNNGTGG	2 cut(s)	819, 854
CviAII	CATG	8 cut(s)	184, 408, 509, 524, 957, 1116, 1208, 1309
CviQI	GTAC	4 cut(s)	453, 534, 727, 1123
DdeI	CTNAG	3 cut(s)	1392, 1452, 1595
DpnI	GATC	6 cut(s)	16, 393, 695, 815, 1111, 1380
DpnII	GATC	6 cut(s)	14, 391, 693, 813, 1109, 1378
EaeI	YGGCCR	4 cut(s)	63, 167, 1260, 1532
EagI	CGGCCG	1 cut(s)	63
Eam1104I	CTCTTC	2 cut(s)	275, 1492
EarI	CTCTTC	2 cut(s)	275, 1492
EciI	GGCGGA	1 cut(s)	1494
Ecl136II	GAGCTC	1 cut(s)	1502
EclXI	CGGCCG	1 cut(s)	63
Eco130I	CCWWGG	5 cut(s)	114, 183, 1115, 1535, 1579
Eco147I	AGGCCT	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	1504
Eco31I	GGTCTC	1 cut(s)	1365
Eco32I	GATATC	1 cut(s)	1319
Eco47I	GGWCC	4 cut(s)	542, 874, 881, 1204
Eco52I	CGGCCG	1 cut(s)	63
Eco53kI	GAGCTC	1 cut(s)	1502
Eco57I	CTGAAG	1 cut(s)	979
EcoICRI	GAGCTC	1 cut(s)	1502
EcoO109I	RGGNCCY	3 cut(s)	556, 685, 1583
EcoRII	CCWGG	4 cut(s)	729, 876, 1182, 1468
EcoRV	GATATC	1 cut(s)	1319
EcoT14I	CCWWGG	5 cut(s)	114, 183, 1115, 1535, 1579
EcoT38I	GRGCYC	1 cut(s)	1504
ErhI	CCWWGG	5 cut(s)	114, 183, 1115, 1535, 1579
FaeI	CATG	8 cut(s)	187, 411, 512, 527, 960, 1119, 1211, 1312
FaqI	GGGAC	4 cut(s)	361, 887, 894, 1030
FatI	CATG	8 cut(s)	183, 407, 508, 523, 956, 1115, 1207, 1308
FauI	CCCGC	2 cut(s)	140, 643
FbaI	TGATCA	2 cut(s)	693, 813
FblI	GTMKAC	2 cut(s)	899, 1620
FokI	GGATG	4 cut(s)	714, 746, 854, 889
FriOI	GRGCYC	1 cut(s)	1504
FspBI	CTAG	3 cut(s)	789, 1352, 1527
GlaI	GCGC	3 cut(s)	86, 224, 427
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	9 cut(s)	65, 113, 128, 169, 557, 686, 1262, 1534, 1584
HapII	CCGG	2 cut(s)	141, 1314
HgaI	GACGC	4 cut(s)	155, 285, 358, 1180
HhaI	GCGC	3 cut(s)	87, 225, 428
Hin1I	GRCGYC	3 cut(s)	147, 296, 350
Hin1II	CATG	8 cut(s)	187, 411, 512, 527, 960, 1119, 1211, 1312
Hin6I	GCGC	3 cut(s)	85, 223, 426
HinP1I	GCGC	3 cut(s)	85, 223, 426
HincII	GTYRAC	1 cut(s)	1621
HindII	GTYRAC	1 cut(s)	1621
HindIII	AAGCTT	1 cut(s)	991
HinfI	GANTC	1 cut(s)	1242
HpaII	CCGG	2 cut(s)	141, 1314
HphI	GGTGA	3 cut(s)	188, 1292, 1397
Hpy166II	GTNNAC	2 cut(s)	900, 1621
Hpy188I	TCNGA	5 cut(s)	106, 280, 598, 1323, 1598
Hpy188III	TCNNGA	9 cut(s)	458, 615, 746, 1037, 1096, 1145, 1222, 1309, 1376
Hpy8I	GTNNAC	2 cut(s)	900, 1621
Hpy99I	CGWCG	6 cut(s)	85, 110, 149, 301, 1625, 1628
HpyAV	CCTTC	8 cut(s)	41, 275, 842, 916, 1043, 1100, 1173, 1422
HpyCH4III	ACNGT	3 cut(s)	897, 1196, 1327
HpyCH4IV	ACGT	1 cut(s)	332
HpyCH4V	TGCA	5 cut(s)	325, 519, 552, 1061, 1523
HpyF10VI	GCNNNNNNNGC	8 cut(s)	82, 125, 141, 423, 1159, 1362, 1499, 1520
HpyF3I	CTNAG	3 cut(s)	1392, 1452, 1595
HpySE526I	ACGT	1 cut(s)	332
Hsp92I	GRCGYC	3 cut(s)	147, 296, 350
Hsp92II	CATG	8 cut(s)	187, 411, 512, 527, 960, 1119, 1211, 1312
HspAI	GCGC	3 cut(s)	85, 223, 426
KpnI	GGTACC	1 cut(s)	730
Ksp22I	TGATCA	2 cut(s)	693, 813
KspI	CCGCGG	1 cut(s)	173
Kzo9I	GATC	6 cut(s)	14, 391, 693, 813, 1109, 1378
LguI	GCTCTTC	1 cut(s)	1492
LmnI	GCTCC	5 cut(s)	433, 748, 1486, 1507, 1569
Lsp1109I	GCAGC	6 cut(s)	147, 297, 531, 577, 1468, 1507
LweI	GCATC	3 cut(s)	1378, 1523, 1532
MaeI	CTAG	3 cut(s)	789, 1352, 1527
MaeII	ACGT	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	1168
MalI	GATC	6 cut(s)	16, 393, 695, 815, 1111, 1380
MboI	GATC	6 cut(s)	14, 391, 693, 813, 1109, 1378
MboII	GAAGA	5 cut(s)	241, 262, 1052, 1509, 1539
MflI	RGATCY	2 cut(s)	1109, 1378
MhlI	GDGCHC	4 cut(s)	575, 1427, 1466, 1504
MlsI	TGGCCA	1 cut(s)	1262
MluCI	AATT	6 cut(s)	673, 970, 1056, 1251, 1434, 1599
MluNI	TGGCCA	1 cut(s)	1262
MlyI	GAGTC	1 cut(s)	1251
MmeI	TCCRAC	2 cut(s)	129, 1228
Mox20I	TGGCCA	1 cut(s)	1262
MscI	TGGCCA	1 cut(s)	1262
MseI	TTAA	3 cut(s)	981, 1541, 1602
Msp20I	TGGCCA	1 cut(s)	1262
MspA1I	CMGCKG	3 cut(s)	172, 539, 1520
MspCI	CTTAAG	1 cut(s)	980
MspI	CCGG	2 cut(s)	141, 1314
MspR9I	CCNGG	4 cut(s)	731, 878, 1184, 1470
Mva1269I	GAATGC	1 cut(s)	1090
MvaI	CCWGG	4 cut(s)	731, 878, 1184, 1470
MvnI	CGCG	3 cut(s)	68, 85, 172
MwoI	GCNNNNNNNGC	8 cut(s)	82, 125, 141, 423, 1159, 1362, 1499, 1520
NcoI	CCATGG	2 cut(s)	183, 1115
NdeII	GATC	6 cut(s)	14, 391, 693, 813, 1109, 1378
NlaIII	CATG	8 cut(s)	187, 411, 512, 527, 960, 1119, 1211, 1312
NlaIV	GGNNCC	8 cut(s)	244, 405, 558, 687, 728, 875, 882, 1585
NmeAIII	GCCGAG	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	1168
NotI	GCGGCCGC	1 cut(s)	63
NspI	RCATGY	2 cut(s)	512, 960
PagI	TCATGA	1 cut(s)	1308
PceI	AGGCCT	1 cut(s)	128
PciSI	GCTCTTC	1 cut(s)	1492
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PctI	GAATGC	1 cut(s)	1090
PflMI	CCANNNNNTGG	1 cut(s)	1277
PleI	GAGTC	1 cut(s)	1250
PpsI	GAGTC	1 cut(s)	1250
Ppu21I	YACGTR	1 cut(s)	333
Psp124BI	GAGCTC	1 cut(s)	1504
Psp6I	CCWGG	4 cut(s)	729, 876, 1182, 1468
PspGI	CCWGG	4 cut(s)	729, 876, 1182, 1468
PspN4I	GGNNCC	8 cut(s)	244, 405, 558, 687, 728, 875, 882, 1585
PspPI	GGNCC	7 cut(s)	542, 556, 685, 874, 881, 1204, 1583
PsuI	RGATCY	2 cut(s)	1109, 1378
PvuII	CAGCTG	2 cut(s)	539, 1520
RsaI	GTAC	4 cut(s)	454, 535, 728, 1124
RsaNI	GTAC	4 cut(s)	453, 534, 727, 1123
SacI	GAGCTC	1 cut(s)	1504
SacII	CCGCGG	1 cut(s)	173
SalI	GTCGAC	1 cut(s)	1619
SapI	GCTCTTC	1 cut(s)	1492
SaqAI	TTAA	3 cut(s)	981, 1541, 1602
Sau3AI	GATC	6 cut(s)	14, 391, 693, 813, 1109, 1378
Sau96I	GGNCC	7 cut(s)	542, 556, 685, 874, 881, 1204, 1583
ScaI	AGTACT	2 cut(s)	454, 1124
SchI	GAGTC	1 cut(s)	1251
ScrFI	CCNGG	4 cut(s)	731, 878, 1184, 1470
SduI	GDGCHC	4 cut(s)	575, 1427, 1466, 1504
SfaNI	GCATC	3 cut(s)	1378, 1523, 1532
SfcI	CTRYAG	1 cut(s)	448
Sfr303I	CCGCGG	1 cut(s)	173
SgrAI	CRCCGGYG	1 cut(s)	140
SgrBI	CCGCGG	1 cut(s)	173
SinI	GGWCC	4 cut(s)	542, 874, 881, 1204
SmlI	CTYRAG	3 cut(s)	122, 980, 1143
SmoI	CTYRAG	3 cut(s)	122, 980, 1143
Sse9I	AATT	6 cut(s)	673, 970, 1056, 1251, 1434, 1599
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	9 cut(s)	5, 62, 66, 97, 133, 170, 172, 650, 1505
SspI	AATATT	1 cut(s)	864
SspMI	CTAG	3 cut(s)	789, 1352, 1527
SstI	GAGCTC	1 cut(s)	1504
StuI	AGGCCT	1 cut(s)	128
StyD4I	CCNGG	4 cut(s)	729, 876, 1182, 1468
StyI	CCWWGG	5 cut(s)	114, 183, 1115, 1535, 1579
TaaI	ACNGT	3 cut(s)	897, 1196, 1327
TaiI	ACGT	1 cut(s)	335
TaqI	TCGA	3 cut(s)	13, 608, 1620
TaqII	GACCGA	1 cut(s)	149
TasI	AATT	6 cut(s)	673, 970, 1056, 1251, 1434, 1599
TatI	WGTACW	3 cut(s)	452, 533, 1122
TauI	GCSGC	4 cut(s)	8, 65, 68, 172
Tru1I	TTAA	3 cut(s)	981, 1541, 1602
Tru9I	TTAA	3 cut(s)	981, 1541, 1602
TscAI	CASTG	1 cut(s)	1068
TseFI	GTSAC	1 cut(s)	1168
TseI	GCWGC	6 cut(s)	135, 285, 519, 565, 1456, 1520
Tsp45I	GTSAC	1 cut(s)	1168
TspDTI	ATGAA	6 cut(s)	248, 725, 945, 1119, 1297, 1361
TspGWI	ACGGA	2 cut(s)	44, 474
TspRI	CASTG	1 cut(s)	1068
Van91I	CCANNNNNTGG	1 cut(s)	1277
Vha464I	CTTAAG	1 cut(s)	980
VpaK11BI	GGWCC	4 cut(s)	542, 874, 881, 1204
XapI	RAATTY	2 cut(s)	970, 1251
XceI	RCATGY	2 cut(s)	512, 960
XmiI	GTMKAC	2 cut(s)	899, 1620
XspI	CTAG	3 cut(s)	789, 1352, 1527
ZrmI	AGTACT	2 cut(s)	454, 1124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.