Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001477

Physical Location & Seq

Genomic Coordinates Reverse (-)

63893413 .. 63896147

Gene Structure 2735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015274

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGTCGAGCCCGGCTTCCACCTCGTCAACCCCTGCGCCGGTCAATGGGTCGCCGGAATCCTCTCCACGACTTCACCAGTATCCAATCGGTCGACGTCAAAATCGAGACCAAAACCAAGGATAGAGATTTGAATAAGTATAATCCGTCTTGGTCAAACACCAGCAAGCATGTGTCTTGCAGCCATGAGTTATGTACAGCTGGTCCAAACTGCAAGGGCCCCAAGCAGCCGTGCCCTTACACTATTGAATACTTCTCGGAAAATACATCGAGTTCTGGATTGCTTGTGGAGGATATATTACATCTTGTAGCGTGGGGTAATGGTGTATCAAACAATTCTATTCAGGCCGCTGTGATCATAGGATGTGGTATGAAGCAAAGTGGTGGGTACCTGGATGGCATTGCTCCTGATGGTCTTATGGGTTTAGGACTTGGAGAGGTTTCAGTTCCTAGTTTCCTTGCTAAAGCAGGATTGATCACAAACTCTTTCTCAATGTGCGTTGATGAGGAAGGTTCTGGGAGAATATTTTTTGGGGACCAGGGACCAAATACTCAAGAGTCTATATCCTTCTTGCCCTCAAACGGAAACTATGAAACCTACATCGTTGGTGTGGAAGCATGTTGTATTGGAAATTCTTGTCTTAAGCAGACAAGCTTCAGGGCACTGGTTGATAGTGGGACATCATTTACATTCCTTCCAAAAGAAGTGCATGATAAAATTGCAGTGGAGTTTGATAAGCGAGTGAATGCGACAATCACGAGTTATGAAGGATCTCCTTGGAAGTACTGTTATAATACCAGTTCTCAAGATTTGCTAAAAGTGCCTTCTGTGACGCTTATGTTCCTGGCAAACAACAGTTTTGTGGTCCATGACCCCGTTTTTCCGATATATGATAAGCAGCTAATATGCTTTGGTGCTGGGAGCGTACTGTCAACTGGATGGTGGGTATCTGGTGAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

321

Amino Acids

34.86

Weight (kDa)

6.08

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	41 - 179	2.5e-25	Xylanase inhibitor N-terminal
Asp	PF00026	88 - 269	7e-09	Eukaryotic aspartyl protease
TAXi_C	PF14541	216 - 305	6e-08	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10080
fragaria_vesca	FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650
malus_domestica	MD01G1024100.v1.1 MD15G1362800.v1.1
prunus_persica	Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.6G179100_v2.0.a1
pyrus_communis	pycom01g05180 pycom15g32510
rosa_chinensis	RchiOBHm_Chr1g0350111 RchiOBHm_Chr2g0115521 RchiOBHm_Chr2g0129991
rosa_laevigata	RLG00000005996 RLG00000006248 RLG00000015274 RLG00000018190 RLG00000030771
rosa_multiflora	Rmu_sc0005625.1_g000012 Rmu_sc0007210.1_g000001 Rmu_sc0009900.1_g000009 Rmu_sc0021224.1_g000001 Rmu_sc0039462.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064010 Rroxscaffold_1G00064020 Rroxscaffold_2G00123530 Rroxscaffold_2G00128130 Rroxscaffold_2G00129010 Rroxscaffold_3G00229700 Rroxscaffold_5G00344250 Rroxscaffold_7G00197080 Rroxscaffold_7G00197100 Rroxscaffold_7G00217690
rosa_rugosa	Rorug02G0197300 Rorug02G0197300 Rorug02G0197300
rosa_samantha	Rh1CG101200 Rh1CG101300 Rh2AG254900 Rh2AG342200 Rh2BG265700 Rh2CG260100 Rh2DG263000 Rh2DG368300 Rh2DG576100
rosa_wichuraiana	Rw2G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	792
AatII	GACGTC	1 cut(s)	99
Acc65I	GGTACC	1 cut(s)	387
AccB1I	GGYRCC	1 cut(s)	387
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	1 cut(s)	348
AclWI	GGATC	1 cut(s)	778
AcsI	RAATTY	1 cut(s)	631
AcuI	CTGAAG	1 cut(s)	640
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	4 cut(s)	196, 389, 785, 927
AfiI	CCNNNNNNNGG	3 cut(s)	39, 46, 581
AflII	CTTAAG	1 cut(s)	641
AgsI	TTSAA	2 cut(s)	133, 248
AjnI	CCWGG	3 cut(s)	390, 537, 843
AluBI	AGCT	3 cut(s)	200, 654, 901
AluI	AGCT	3 cut(s)	200, 654, 901
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	1 cut(s)	778
AoxI	GGCC	2 cut(s)	217, 345
ApaI	GGGCCC	1 cut(s)	221
ApeKI	GCWGC	3 cut(s)	180, 226, 898
ApoI	RAATTY	1 cut(s)	631
Asp718I	GGTACC	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	6 cut(s)	203, 217, 218, 535, 542, 865
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	4 cut(s)	203, 535, 542, 865
BaeGI	GKGCMC	3 cut(s)	221, 236, 664
BanI	GGYRCC	1 cut(s)	387
BanII	GRGCYC	2 cut(s)	13, 221
BauI	CACGAG	1 cut(s)	757
BbvI	GCAGC	3 cut(s)	192, 238, 910
BccI	CCATC	3 cut(s)	389, 404, 933
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	3 cut(s)	392, 539, 845
BciVI	GTATCC	1 cut(s)	92
BclI	TGATCA	2 cut(s)	354, 474
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	450
BfrI	CTTAAG	1 cut(s)	641
BfuI	GTATCC	1 cut(s)	92
BisI	GCNGC	4 cut(s)	181, 227, 348, 899
BlsI	GCNGC	4 cut(s)	182, 228, 349, 900
BmcAI	AGTACT	1 cut(s)	785
Bme1390I	CCNGG	4 cut(s)	13, 392, 539, 845
Bme18I	GGWCC	4 cut(s)	203, 535, 542, 865
BmgT120I	GGNCC	6 cut(s)	203, 217, 218, 535, 542, 865
BmiI	GGNNCC	5 cut(s)	219, 220, 389, 536, 543
BmrFI	CCNGG	4 cut(s)	13, 392, 539, 845
BpuEI	CTTGAG	2 cut(s)	537, 789
BpuMI	CCSGG	1 cut(s)	13
BsaHI	GRCGYC	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	3 cut(s)	117, 538, 776
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 46, 581
Bse118I	RCCGGY	1 cut(s)	39
Bse1I	ACTGG	4 cut(s)	78, 669, 798, 940
Bse3DI	GCAATG	1 cut(s)	399
BseBI	CCWGG	3 cut(s)	392, 539, 845
BseDI	CCNNGG	3 cut(s)	117, 538, 776
BseGI	GGATG	3 cut(s)	368, 400, 944
BseLI	CCNNNNNNNGG	3 cut(s)	39, 46, 581
BseMI	GCAATG	1 cut(s)	399
BseNI	ACTGG	4 cut(s)	78, 669, 798, 940
BseSI	GKGCMC	3 cut(s)	221, 236, 664
BseXI	GCAGC	3 cut(s)	192, 238, 910
BseYI	CCCAGC	1 cut(s)	917
Bsh1285I	CGRYCG	1 cut(s)	93
BshFI	GGCC	2 cut(s)	219, 347
BshNI	GGYRCC	1 cut(s)	387
BsiEI	CGRYCG	1 cut(s)	93
BsiSI	CCGG	3 cut(s)	13, 40, 55
BslFI	GGGAC	3 cut(s)	548, 555, 691
BslI	CCNNNNNNNGG	3 cut(s)	39, 46, 581
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	3 cut(s)	548, 555, 691
BsmI	GAATGC	1 cut(s)	751
BsnI	GGCC	2 cut(s)	219, 347
Bso31I	GGTCTC	1 cut(s)	101
Bsp120I	GGGCCC	1 cut(s)	217
Bsp1286I	GDGCHC	4 cut(s)	13, 221, 236, 664
Bsp1407I	TGTACA	1 cut(s)	194
Bsp143I	GATC	3 cut(s)	354, 474, 770
BspACI	CCGC	1 cut(s)	348
BspANI	GGCC	2 cut(s)	219, 347
BspLI	GGNNCC	5 cut(s)	219, 220, 389, 536, 543
BspPI	GGATC	1 cut(s)	778
BspT107I	GGYRCC	1 cut(s)	387
BspTI	CTTAAG	1 cut(s)	641
BspTNI	GGTCTC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	399
BsrFI	RCCGGY	1 cut(s)	39
BsrGI	TGTACA	1 cut(s)	194
BsrI	ACTGG	4 cut(s)	78, 669, 798, 940
BssAI	RCCGGY	1 cut(s)	39
BssECI	CCNNGG	3 cut(s)	117, 538, 776
BssMI	GATC	3 cut(s)	354, 474, 770
BssNI	GRCGYC	1 cut(s)	96
BssSI	CACGAG	1 cut(s)	757
BssT1I	CCWWGG	2 cut(s)	117, 776
Bst2BI	CACGAG	1 cut(s)	757
Bst2UI	CCWGG	3 cut(s)	392, 539, 845
Bst4CI	ACNGT	3 cut(s)	788, 857, 930
BstACI	GRCGYC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	641
BstAUI	TGTACA	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	167
BstF5I	GGATG	3 cut(s)	368, 400, 944
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	3 cut(s)	357, 477, 773
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	3 cut(s)	354, 474, 770
BstMCI	CGRYCG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	1 cut(s)	820
BstNI	CCWGG	3 cut(s)	392, 539, 845
BstNSI	RCATGY	2 cut(s)	173, 621
BstSCI	CCNGG	4 cut(s)	11, 390, 537, 843
BstSLI	GKGCMC	3 cut(s)	221, 236, 664
BstV1I	GCAGC	3 cut(s)	192, 238, 910
BstX2I	RGATCY	1 cut(s)	770
BstYI	RGATCY	1 cut(s)	770
BsuI	GTATCC	1 cut(s)	92
BsuRI	GGCC	2 cut(s)	219, 347
BtsCI	GGATG	3 cut(s)	368, 400, 944
BtsI	GCAGTG	1 cut(s)	729
BtsIMutI	CAGTG	2 cut(s)	662, 729
Cac8I	GCNNGC	1 cut(s)	167
CfoI	GCGC	1 cut(s)	39
Cfr10I	RCCGGY	1 cut(s)	39
Cfr13I	GGNCC	6 cut(s)	203, 217, 218, 535, 542, 865
CseI	GACGC	1 cut(s)	841
Csp6I	GTAC	4 cut(s)	195, 388, 784, 926
CviAII	CATG	5 cut(s)	170, 185, 618, 710, 869
CviJI	RGCY	9 cut(s)	11, 16, 183, 200, 219, 229, 347, 654, 901
CviKI_1	RGCY	9 cut(s)	11, 16, 183, 200, 219, 229, 347, 654, 901
CviQI	GTAC	4 cut(s)	195, 388, 784, 926
DpnI	GATC	3 cut(s)	356, 476, 772
DpnII	GATC	3 cut(s)	354, 474, 770
Eco130I	CCWWGG	2 cut(s)	117, 776
Eco24I	GRGCYC	2 cut(s)	13, 221
Eco31I	GGTCTC	1 cut(s)	101
Eco47I	GGWCC	4 cut(s)	203, 535, 542, 865
Eco57I	CTGAAG	1 cut(s)	640
EcoO109I	RGGNCCY	2 cut(s)	217, 218
EcoRII	CCWGG	3 cut(s)	390, 537, 843
EcoT14I	CCWWGG	2 cut(s)	117, 776
EcoT38I	GRGCYC	2 cut(s)	13, 221
ErhI	CCWWGG	2 cut(s)	117, 776
FaeI	CATG	5 cut(s)	173, 188, 621, 713, 872
FaqI	GGGAC	3 cut(s)	548, 555, 691
FatI	CATG	5 cut(s)	169, 184, 617, 709, 868
FbaI	TGATCA	2 cut(s)	354, 474
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	4 cut(s)	181, 227, 348, 899
FokI	GGATG	3 cut(s)	375, 407, 951
FriOI	GRGCYC	2 cut(s)	13, 221
Fsp4HI	GCNGC	4 cut(s)	181, 227, 348, 899
FspBI	CTAG	1 cut(s)	450
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	4 cut(s)	181, 227, 348, 899
GsaI	CCCAGC	1 cut(s)	921
HaeIII	GGCC	2 cut(s)	219, 347
HapII	CCGG	3 cut(s)	13, 40, 55
HgaI	GACGC	1 cut(s)	841
HhaI	GCGC	1 cut(s)	39
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	5 cut(s)	173, 188, 621, 713, 872
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HincII	GTYRAC	3 cut(s)	29, 94, 933
HindII	GTYRAC	3 cut(s)	29, 94, 933
HindIII	AAGCTT	1 cut(s)	652
HinfI	GANTC	2 cut(s)	58, 557
HpaII	CCGG	3 cut(s)	13, 40, 55
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	3 cut(s)	29, 94, 933
Hpy188I	TCNGA	2 cut(s)	259, 885
Hpy188III	TCNNGA	6 cut(s)	106, 276, 407, 554, 757, 806
Hpy8I	GTNNAC	3 cut(s)	29, 94, 933
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	5 cut(s)	503, 577, 704, 761, 834
HpyCH4III	ACNGT	3 cut(s)	788, 857, 930
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	4 cut(s)	180, 213, 709, 722
HpyF10VI	GCNNNNNNNGC	1 cut(s)	820
HpySE526I	ACGT	1 cut(s)	96
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	5 cut(s)	173, 188, 621, 713, 872
HspAI	GCGC	1 cut(s)	37
KpnI	GGTACC	1 cut(s)	391
Ksp22I	TGATCA	2 cut(s)	354, 474
Kzo9I	GATC	3 cut(s)	354, 474, 770
LmnI	GCTCC	2 cut(s)	409, 921
Lsp1109I	GCAGC	3 cut(s)	192, 238, 910
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	829
MalI	GATC	3 cut(s)	356, 476, 772
MboI	GATC	3 cut(s)	354, 474, 770
MflI	RGATCY	1 cut(s)	770
MhlI	GDGCHC	4 cut(s)	13, 221, 236, 664
MluCI	AATT	4 cut(s)	334, 631, 717, 956
MlyI	GAGTC	1 cut(s)	566
MnlI	CCTC	6 cut(s)	33, 72, 283, 430, 499, 586
MseI	TTAA	1 cut(s)	642
MspA1I	CMGCKG	2 cut(s)	200, 350
MspCI	CTTAAG	1 cut(s)	641
MspI	CCGG	3 cut(s)	13, 40, 55
MspR9I	CCNGG	4 cut(s)	13, 392, 539, 845
Mva1269I	GAATGC	1 cut(s)	751
MvaI	CCWGG	3 cut(s)	392, 539, 845
MwoI	GCNNNNNNNGC	1 cut(s)	820
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	3 cut(s)	354, 474, 770
NlaIII	CATG	5 cut(s)	173, 188, 621, 713, 872
NlaIV	GGNNCC	5 cut(s)	219, 220, 389, 536, 543
NmuCI	GTSAC	1 cut(s)	829
NspI	RCATGY	2 cut(s)	173, 621
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	1 cut(s)	751
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	4 cut(s)	182, 228, 349, 900
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
PsiI	TTATAA	1 cut(s)	792
Psp6I	CCWGG	3 cut(s)	390, 537, 843
PspFI	CCCAGC	1 cut(s)	917
PspGI	CCWGG	3 cut(s)	390, 537, 843
PspN4I	GGNNCC	5 cut(s)	219, 220, 389, 536, 543
PspOMI	GGGCCC	1 cut(s)	217
PspPI	GGNCC	6 cut(s)	203, 217, 218, 535, 542, 865
PsuI	RGATCY	1 cut(s)	770
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	4 cut(s)	196, 389, 785, 927
RsaNI	GTAC	4 cut(s)	195, 388, 784, 926
SalI	GTCGAC	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	642
SatI	GCNGC	4 cut(s)	181, 227, 348, 899
Sau3AI	GATC	3 cut(s)	354, 474, 770
Sau96I	GGNCC	6 cut(s)	203, 217, 218, 535, 542, 865
ScaI	AGTACT	1 cut(s)	785
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	4 cut(s)	13, 392, 539, 845
SduI	GDGCHC	4 cut(s)	13, 221, 236, 664
SetI	ASST	9 cut(s)	25, 99, 202, 393, 441, 514, 599, 656, 903
SinI	GGWCC	4 cut(s)	203, 535, 542, 865
SmlI	CTYRAG	3 cut(s)	552, 641, 804
SmoI	CTYRAG	3 cut(s)	552, 641, 804
Sse9I	AATT	4 cut(s)	334, 631, 717, 956
SsiI	CCGC	1 cut(s)	348
SspI	AATATT	1 cut(s)	525
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	4 cut(s)	11, 390, 537, 843
StyI	CCWWGG	2 cut(s)	117, 776
TaaI	ACNGT	3 cut(s)	788, 857, 930
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	4 cut(s)	7, 93, 105, 269
TaqII	GACCGA	1 cut(s)	79
TasI	AATT	4 cut(s)	334, 631, 717, 956
TatI	WGTACW	2 cut(s)	194, 783
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	1 cut(s)	642
Tru9I	TTAA	1 cut(s)	642
TscAI	CASTG	2 cut(s)	669, 729
TseFI	GTSAC	1 cut(s)	829
TseI	GCWGC	3 cut(s)	180, 226, 898
Tsp45I	GTSAC	1 cut(s)	829
TspDTI	ATGAA	3 cut(s)	386, 606, 780
TspGWI	ACGGA	2 cut(s)	135, 597
TspRI	CASTG	2 cut(s)	669, 729
Vha464I	CTTAAG	1 cut(s)	641
VpaK11BI	GGWCC	4 cut(s)	203, 535, 542, 865
XapI	RAATTY	1 cut(s)	631
XceI	RCATGY	2 cut(s)	173, 621
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	1 cut(s)	450
ZraI	GACGTC	1 cut(s)	97
ZrmI	AGTACT	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.