Rroxscaffold_2G00123530

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
57366930 .. 57370360
3431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00123530.1

Sequence Viewer

Length: 1140 bp
ATGGATCCATCGCACTGTAGGAACAGTGGGACCAAAGTTCAAATCGATGGATCCACCTTCATCCGTAGAACTTGCGGGTCCAAAGTTGAGATCGAGAGATCCGCCAACCCGGATGTTCCGAAATGCCTTCATCCGTTGGCTCTCTCGGGATTTAAGTTGAGGCGGTGTGGGAGCCCGGCGGGTATTAGGCGCTCGGTGGGCGGATTGGCACTACTTCGGCCGATTGGTTGCTTCCTCCCTCCCCGGTTGGTTGCCGGGCTTGAAATTCCGTTTGTTGTTGGGTTTGAGGCTCCAATAGTTGAAGAGTTCGTGGTTCCATGTCGACAACTTGAGGATTTGGTGTTGGGGATCCCGAGTTTTTTTGGTGAGAGAAAGGATTTGAGTTTTCGTGTTGGTAGAAAGGATCTATCTTACTTACTCGAGCTCTCTCACTCGGAGCGGCCGCCATGGCGGCTCGGAGATCTCTCGCTCTTTCTCCTTCCCCTACACTCTCTCCTCCTCCGTAATGCAGCCGCGATTACGCTCTCCCCGCGCCTCATACACCGCTTCTCCGACGAGGCCAAGGCTCTCAAGGCCTCCCACGGCACCGGCGACGCCAAATGGCTCGGTCGGTGGCCGCAGAGAACTCTATGGACTACTACCACCTCTTCGCCGGCACCGACTTCCGGCGCCGAAGATGAAGCTCGGCACCTCTCGTCATCGGTTCCGGTTCCTCTTCCTCTCCGAAGGCGCAACACGGCGTCGTTTGGCAATGACTTCGGCTGGTTGCATTATACGTGGACCGATATAGGGACGCCGAATGTTTCGTTTCGGTGGCATTGGATACCGAAAGTTATTGCTTCATTGAGAGAAGCTGGCCTTGAATCATCAAATTTAATACTTGGTATCGACTTCACAAAGAGCAATGATTGGACGAGGCAAATATTCATTCAACATAAAAAGTCTTCATGCTATCGTAGCACACCTAATCCTTACGAGCAAGCAATCTCTATAATTGGCCGCACTTTGTCTCCTTTGGATGAAGATAAGTTAATGTTTTTCAATGAAGCTATTGAGGGATCCTTGTCACCAGGAGTCGGGGATGCGGTGCGACAATGCCAAAATGCTGGTGTTAAGGTTAAATGGTTGAGAAGAGAATGA

Protein Analysis

379

Amino Acids

42.27

Weight (kDa)

9.5

Isoelectric Point (pI)

53.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 584, 655, 668, 687
AccBSI CCGCTC 1 cut(s) 439
AccI GTMKAC 1 cut(s) 322
AccII CGCG 2 cut(s) 515, 532
AclWI GGATC 9 cut(s) 12, 45, 58, 93, 343, 356, 411, 1053, 1066
AcoI YGGCCR 4 cut(s) 218, 440, 614, 997
AcsI RAATTY 2 cut(s) 264, 871
AcyI GRCGYC 4 cut(s) 594, 669, 740, 794
AfiI CCNNNNNNNGG 3 cut(s) 665, 789, 1076
AgsI TTSAA 6 cut(s) 41, 263, 302, 863, 932, 1042
AjnI CCWGG 1 cut(s) 1069
AluBI AGCT 4 cut(s) 424, 683, 854, 1049
AluI AGCT 4 cut(s) 424, 683, 854, 1049
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 1 cut(s) 1014
AlwI GGATC 9 cut(s) 12, 45, 58, 93, 343, 356, 411, 1053, 1066
Ama87I CYCGRG 3 cut(s) 145, 352, 419
AoxI GGCC 7 cut(s) 218, 440, 558, 573, 614, 856, 997
ApeKI GCWGC 1 cut(s) 509
ApoI RAATTY 2 cut(s) 264, 871
AspLEI GCGC 4 cut(s) 192, 534, 671, 732
AspS9I GGNCC 3 cut(s) 30, 78, 780
AsuC2I CCSGG 4 cut(s) 110, 176, 244, 256
AsuHPI GGTGA 2 cut(s) 377, 1059
AvaI CYCGRG 3 cut(s) 145, 352, 419
AvaII GGWCC 3 cut(s) 30, 78, 780
BamHI GGATCC 4 cut(s) 4, 50, 348, 1058
BanI GGYRCC 4 cut(s) 584, 655, 668, 687
BanII GRGCYC 2 cut(s) 176, 426
BbsI GAAGAC 1 cut(s) 936
Bbv12I GWGCWC 1 cut(s) 426
BbvI GCAGC 1 cut(s) 521
BccI CCATC 2 cut(s) 16, 41
BceAI ACGGC 2 cut(s) 598, 753
BcgI CGANNNNNNTGC 2 cut(s) 739, 773
BciT130I CCWGG 1 cut(s) 1071
BciVI GTATCC 1 cut(s) 816
BcnI CCSGG 4 cut(s) 110, 176, 244, 256
BcoDI GTCTC 1 cut(s) 1014
BfmI CTRYAG 1 cut(s) 16
BfoI RGCGCY 2 cut(s) 193, 672
BfuI GTATCC 1 cut(s) 816
BglI GCCNNNNNGGC 2 cut(s) 448, 451
BglII AGATCT 1 cut(s) 460
BisI GCNGC 7 cut(s) 440, 443, 452, 510, 513, 617, 1000
BlsI GCNGC 7 cut(s) 441, 444, 453, 511, 514, 618, 1001
Bme1390I CCNGG 5 cut(s) 110, 176, 244, 256, 1071
Bme18I GGWCC 3 cut(s) 30, 78, 780
BmeT110I CYCGRG 3 cut(s) 145, 352, 419
BmgT120I GGNCC 3 cut(s) 30, 78, 780
BmrFI CCNGG 5 cut(s) 110, 176, 244, 256, 1071
BmsI GCATC 1 cut(s) 1072
BpiI GAAGAC 1 cut(s) 936
BpuEI CTTGAG 2 cut(s) 350, 554
BpuMI CCSGG 4 cut(s) 110, 176, 244, 256
Bsa29I ATCGAT 1 cut(s) 45
BsaAI YACGTR 1 cut(s) 777
BsaHI GRCGYC 4 cut(s) 594, 669, 740, 794
BsaJI CCNNGG 4 cut(s) 242, 446, 561, 580
BsaWI WCCGGW 1 cut(s) 706
BsaXI ACNNNNNCTCC 6 cut(s) 477, 507, 533, 563, 994, 1024
Bsc4I CCNNNNNNNGG 3 cut(s) 665, 789, 1076
Bse118I RCCGGY 2 cut(s) 587, 652
Bse3DI GCAATG 2 cut(s) 757, 910
BseBI CCWGG 1 cut(s) 1071
BseCI ATCGAT 1 cut(s) 45
BseDI CCNNGG 4 cut(s) 242, 446, 561, 580
BseGI GGATG 5 cut(s) 60, 118, 130, 1024, 1087
BseLI CCNNNNNNNGG 3 cut(s) 665, 789, 1076
BseMI GCAATG 2 cut(s) 757, 910
BseRI GAGGAG 2 cut(s) 485, 488
BseX3I CGGCCG 2 cut(s) 218, 440
BseXI GCAGC 1 cut(s) 521
Bsh1236I CGCG 2 cut(s) 515, 532
Bsh1285I CGRYCG 3 cut(s) 221, 443, 610
BshFI GGCC 7 cut(s) 220, 442, 560, 575, 616, 858, 999
BshNI GGYRCC 4 cut(s) 584, 655, 668, 687
BshVI ATCGAT 1 cut(s) 45
BsiEI CGRYCG 3 cut(s) 221, 443, 610
BsiHKAI GWGCWC 1 cut(s) 426
BsiHKCI CYCGRG 3 cut(s) 145, 352, 419
BsiSI CCGG 8 cut(s) 110, 176, 244, 255, 588, 653, 666, 707
BslFI GGGAC 2 cut(s) 43, 805
BslI CCNNNNNNNGG 3 cut(s) 665, 789, 1076
BsmAI GTCTC 1 cut(s) 1014
BsmFI GGGAC 2 cut(s) 43, 805
BsnI GGCC 7 cut(s) 220, 442, 560, 575, 616, 858, 999
BsoBI CYCGRG 3 cut(s) 145, 352, 419
Bsp1286I GDGCHC 2 cut(s) 176, 426
Bsp143I GATC 8 cut(s) 4, 50, 90, 98, 348, 403, 460, 1058
Bsp19I CCATGG 1 cut(s) 446
BspANI GGCC 7 cut(s) 220, 442, 560, 575, 616, 858, 999
BspDI ATCGAT 1 cut(s) 45
BspFNI CGCG 2 cut(s) 515, 532
BspPI GGATC 9 cut(s) 12, 45, 58, 93, 343, 356, 411, 1053, 1066
BspT107I GGYRCC 4 cut(s) 584, 655, 668, 687
BsrBI CCGCTC 1 cut(s) 439
BsrDI GCAATG 2 cut(s) 757, 910
BsrFI RCCGGY 2 cut(s) 587, 652
BssAI RCCGGY 2 cut(s) 587, 652
BssECI CCNNGG 4 cut(s) 242, 446, 561, 580
BssMI GATC 8 cut(s) 4, 50, 90, 98, 348, 403, 460, 1058
BssNI GRCGYC 4 cut(s) 594, 669, 740, 794
BssT1I CCWWGG 2 cut(s) 446, 561
Bst2UI CCWGG 1 cut(s) 1071
Bst4CI ACNGT 2 cut(s) 17, 26
Bst6I CTCTTC 4 cut(s) 297, 652, 720, 1126
BstACI GRCGYC 4 cut(s) 594, 669, 740, 794
BstBAI YACGTR 1 cut(s) 777
BstC8I GCNNGC 3 cut(s) 654, 856, 981
BstDSI CCRYGG 2 cut(s) 446, 580
BstF5I GGATG 5 cut(s) 60, 118, 130, 1024, 1087
BstFNI CGCG 2 cut(s) 515, 532
BstH2I RGCGCY 2 cut(s) 193, 672
BstHHI GCGC 4 cut(s) 192, 534, 671, 732
BstKTI GATC 8 cut(s) 7, 53, 93, 101, 351, 406, 463, 1061
BstMAI GTCTC 1 cut(s) 1014
BstMBI GATC 8 cut(s) 4, 50, 90, 98, 348, 403, 460, 1058
BstMCI CGRYCG 3 cut(s) 221, 443, 610
BstMWI GCNNNNNNNGC 6 cut(s) 198, 448, 451, 529, 572, 957
BstNI CCWGG 1 cut(s) 1071
BstSCI CCNGG 5 cut(s) 108, 174, 242, 254, 1069
BstSFI CTRYAG 1 cut(s) 16
BstUI CGCG 2 cut(s) 515, 532
BstV1I GCAGC 1 cut(s) 521
BstV2I GAAGAC 1 cut(s) 936
BstX2I RGATCY 7 cut(s) 4, 50, 98, 348, 403, 460, 1058
BstXI CCANNNNNNTGG 1 cut(s) 1106
BstYI RGATCY 7 cut(s) 4, 50, 98, 348, 403, 460, 1058
BstZI CGGCCG 2 cut(s) 218, 440
Bsu15I ATCGAT 1 cut(s) 45
BsuI GTATCC 1 cut(s) 816
BsuRI GGCC 7 cut(s) 220, 442, 560, 575, 616, 858, 999
BsuTUI ATCGAT 1 cut(s) 45
BtgI CCRYGG 2 cut(s) 446, 580
BtsCI GGATG 5 cut(s) 60, 118, 130, 1024, 1087
BtsIMutI CAGTG 2 cut(s) 13, 31
Cac8I GCNNGC 3 cut(s) 654, 856, 981
CciNI GCGGCCGC 1 cut(s) 440
CfoI GCGC 4 cut(s) 192, 534, 671, 732
Cfr10I RCCGGY 2 cut(s) 587, 652
Cfr13I GGNCC 3 cut(s) 30, 78, 780
ClaI ATCGAT 1 cut(s) 45
CseI GACGC 3 cut(s) 602, 729, 802
CviAII CATG 3 cut(s) 318, 447, 948
DinI GGCGCC 1 cut(s) 670
DpnI GATC 8 cut(s) 6, 52, 92, 100, 350, 405, 462, 1060
DpnII GATC 8 cut(s) 4, 50, 90, 98, 348, 403, 460, 1058
EaeI YGGCCR 4 cut(s) 218, 440, 614, 997
EagI CGGCCG 2 cut(s) 218, 440
Eam1104I CTCTTC 4 cut(s) 297, 652, 720, 1126
EarI CTCTTC 4 cut(s) 297, 652, 720, 1126
EciI GGCGGA 2 cut(s) 91, 216
Ecl136II GAGCTC 1 cut(s) 424
EclXI CGGCCG 2 cut(s) 218, 440
Eco130I CCWWGG 2 cut(s) 446, 561
Eco147I AGGCCT 1 cut(s) 575
Eco24I GRGCYC 2 cut(s) 176, 426
Eco47I GGWCC 3 cut(s) 30, 78, 780
Eco52I CGGCCG 2 cut(s) 218, 440
Eco53kI GAGCTC 1 cut(s) 424
Eco88I CYCGRG 3 cut(s) 145, 352, 419
EcoICRI GAGCTC 1 cut(s) 424
EcoRII CCWGG 1 cut(s) 1069
EcoT14I CCWWGG 2 cut(s) 446, 561
EcoT38I GRGCYC 2 cut(s) 176, 426
EgeI GGCGCC 1 cut(s) 670
EheI GGCGCC 1 cut(s) 670
ErhI CCWWGG 2 cut(s) 446, 561
FaeI CATG 3 cut(s) 321, 450, 951
FaiI YATR 9 cut(s) 319, 448, 539, 631, 774, 788, 936, 949, 992
FalI AAGNNNNNCTT 2 cut(s) 843, 875
FaqI GGGAC 2 cut(s) 43, 805
FatI CATG 3 cut(s) 317, 446, 947
FauI CCCGC 3 cut(s) 68, 172, 537
FblI GTMKAC 1 cut(s) 322
Fnu4HI GCNGC 7 cut(s) 440, 443, 452, 510, 513, 617, 1000
FokI GGATG 5 cut(s) 47, 117, 125, 1031, 1094
FriOI GRGCYC 2 cut(s) 176, 426
Fsp4HI GCNGC 7 cut(s) 440, 443, 452, 510, 513, 617, 1000
GlaI GCGC 4 cut(s) 191, 533, 670, 731
GluI GCNGC 7 cut(s) 440, 443, 452, 510, 513, 617, 1000
HaeII RGCGCY 2 cut(s) 193, 672
HaeIII GGCC 7 cut(s) 220, 442, 560, 575, 616, 858, 999
HapII CCGG 8 cut(s) 110, 176, 244, 255, 588, 653, 666, 707
HgaI GACGC 3 cut(s) 602, 729, 802
HhaI GCGC 4 cut(s) 192, 534, 671, 732
Hin1I GRCGYC 4 cut(s) 594, 669, 740, 794
Hin1II CATG 3 cut(s) 321, 450, 951
Hin6I GCGC 4 cut(s) 190, 532, 669, 730
HinP1I GCGC 4 cut(s) 190, 532, 669, 730
HincII GTYRAC 1 cut(s) 323
HindII GTYRAC 1 cut(s) 323
HinfI GANTC 2 cut(s) 863, 1074
HpaII CCGG 8 cut(s) 110, 176, 244, 255, 588, 653, 666, 707
HphI GGTGA 2 cut(s) 377, 1059
Hpy166II GTNNAC 2 cut(s) 323, 780
Hpy188I TCNGA 5 cut(s) 120, 436, 458, 553, 725
Hpy188III TCNNGA 3 cut(s) 94, 147, 352
Hpy8I GTNNAC 2 cut(s) 323, 780
Hpy99I CGWCG 3 cut(s) 557, 596, 745
HpyAV CCTTC 4 cut(s) 67, 137, 488, 720
HpyCH4III ACNGT 2 cut(s) 17, 26
HpyCH4IV ACGT 1 cut(s) 776
HpyCH4V TGCA 2 cut(s) 509, 769
HpyF10VI GCNNNNNNNGC 6 cut(s) 198, 448, 451, 529, 572, 957
HpySE526I ACGT 1 cut(s) 776
Hsp92I GRCGYC 4 cut(s) 594, 669, 740, 794
Hsp92II CATG 3 cut(s) 321, 450, 951
HspAI GCGC 4 cut(s) 190, 532, 669, 730
KasI GGCGCC 1 cut(s) 668
KroI GCCGGC 1 cut(s) 652
KroNI GCCGGC 1 cut(s) 654
Kzo9I GATC 8 cut(s) 4, 50, 90, 98, 348, 403, 460, 1058
LmnI GCTCC 3 cut(s) 171, 295, 436
Lsp1109I GCAGC 1 cut(s) 521
LweI GCATC 1 cut(s) 1072
MaeII ACGT 1 cut(s) 776
MaeIII GTNAC 1 cut(s) 1065
MalI GATC 8 cut(s) 6, 52, 92, 100, 350, 405, 462, 1060
MbiI CCGCTC 1 cut(s) 439
MboI GATC 8 cut(s) 4, 50, 90, 98, 348, 403, 460, 1058
MboII GAAGA 6 cut(s) 314, 639, 686, 707, 936, 1034
MflI RGATCY 7 cut(s) 4, 50, 98, 348, 403, 460, 1058
MhlI GDGCHC 2 cut(s) 176, 426
MluCI AATT 3 cut(s) 264, 871, 993
Mly113I GGCGCC 1 cut(s) 669
MlyI GAGTC 1 cut(s) 1083
MmeI TCCRAC 1 cut(s) 576
MroNI GCCGGC 1 cut(s) 652
MseI TTAA 5 cut(s) 153, 875, 1031, 1113, 1119
MspI CCGG 8 cut(s) 110, 176, 244, 255, 588, 653, 666, 707
MspR9I CCNGG 5 cut(s) 110, 176, 244, 256, 1071
MvaI CCWGG 1 cut(s) 1071
MvnI CGCG 2 cut(s) 515, 532
MwoI GCNNNNNNNGC 6 cut(s) 198, 448, 451, 529, 572, 957
NaeI GCCGGC 1 cut(s) 654
NarI GGCGCC 1 cut(s) 669
NciI CCSGG 4 cut(s) 110, 176, 244, 256
NcoI CCATGG 1 cut(s) 446
NdeII GATC 8 cut(s) 4, 50, 90, 98, 348, 403, 460, 1058
NgoMIV GCCGGC 1 cut(s) 652
NlaIII CATG 3 cut(s) 321, 450, 951
NmeAIII GCCGAG 1 cut(s) 664
NmuCI GTSAC 1 cut(s) 1065
NotI GCGGCCGC 1 cut(s) 440
PaeR7I CTCGAG 1 cut(s) 419
PceI AGGCCT 1 cut(s) 575
PcsI WCGNNNNNNNCGW 2 cut(s) 588, 656
PdiI GCCGGC 1 cut(s) 654
PfeI GAWTC 1 cut(s) 863
PkrI GCNGC 7 cut(s) 441, 444, 453, 511, 514, 618, 1001
PleI GAGTC 1 cut(s) 1082
PluTI GGCGCC 1 cut(s) 672
PpsI GAGTC 1 cut(s) 1082
Ppu21I YACGTR 1 cut(s) 777
Psp124BI GAGCTC 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 1069
PspGI CCWGG 1 cut(s) 1069
PspPI GGNCC 3 cut(s) 30, 78, 780
PspXI VCTCGAGB 1 cut(s) 419
PsuI RGATCY 7 cut(s) 4, 50, 98, 348, 403, 460, 1058
SacI GAGCTC 1 cut(s) 426
SalI GTCGAC 1 cut(s) 321
SaqAI TTAA 5 cut(s) 153, 875, 1031, 1113, 1119
SatI GCNGC 7 cut(s) 440, 443, 452, 510, 513, 617, 1000
Sau3AI GATC 8 cut(s) 4, 50, 90, 98, 348, 403, 460, 1058
Sau96I GGNCC 3 cut(s) 30, 78, 780
SchI GAGTC 1 cut(s) 1083
ScrFI CCNGG 5 cut(s) 110, 176, 244, 256, 1071
SduI GDGCHC 2 cut(s) 176, 426
SfaNI GCATC 1 cut(s) 1072
SfcI CTRYAG 1 cut(s) 16
SfoI GGCGCC 1 cut(s) 670
Sfr274I CTCGAG 1 cut(s) 419
SgrAI CRCCGGYG 1 cut(s) 587
SinI GGWCC 3 cut(s) 30, 78, 780
SlaI CTCGAG 1 cut(s) 419
SmlI CTYRAG 3 cut(s) 329, 419, 569
SmoI CTYRAG 3 cut(s) 329, 419, 569
Sse9I AATT 3 cut(s) 264, 871, 993
SseBI AGGCCT 1 cut(s) 575
SspDI GGCGCC 1 cut(s) 668
SspI AATATT 1 cut(s) 924
SstI GAGCTC 1 cut(s) 426
StuI AGGCCT 1 cut(s) 575
StyD4I CCNGG 5 cut(s) 108, 174, 242, 254, 1069
StyI CCWWGG 2 cut(s) 446, 561
TaaI ACNGT 2 cut(s) 17, 26
TaiI ACGT 1 cut(s) 779
TaqI TCGA 5 cut(s) 45, 93, 322, 420, 888
TaqII GACCGA 2 cut(s) 596, 797
TasI AATT 3 cut(s) 264, 871, 993
TauI GCSGC 6 cut(s) 442, 445, 454, 515, 619, 1002
TfiI GAWTC 1 cut(s) 863
Tru1I TTAA 5 cut(s) 153, 875, 1031, 1113, 1119
Tru9I TTAA 5 cut(s) 153, 875, 1031, 1113, 1119
TscAI CASTG 2 cut(s) 20, 31
TseFI GTSAC 1 cut(s) 1065
TseI GCWGC 1 cut(s) 509
Tsp45I GTSAC 1 cut(s) 1065
TspDTI ATGAA 8 cut(s) 49, 119, 693, 831, 916, 936, 1035, 1059
TspGWI ACGGA 4 cut(s) 53, 123, 258, 491
TspRI CASTG 2 cut(s) 20, 31
VpaK11BI GGWCC 3 cut(s) 30, 78, 780
XapI RAATTY 2 cut(s) 264, 871
XhoI CTCGAG 1 cut(s) 419
XmiI GTMKAC 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.