Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001477

Physical Location & Seq

Genomic Coordinates Forward (+)

21177712 .. 21180366

Gene Structure 2655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG101200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGTCAGAAGGGGATGCAAGCTGTTGAATTATTGGATAAAGCTGCTTCTGGGTTGGAGTTTTACAAGGCAGGAACAAGGACAAGTACTAGGAACAAATTTGGAAGCTGGAGTTGGGTTGGAATGTATAGGTGACAATCAATGCTGGGTTGCTTCACCTGCTGGGTATTGGAAGTTGAATTTCGACGCGAAGATCTATAAATCGATTCGCAGCCCCGACGCTGCCTCCAAGGCCTGGATATACTCCGATGTCAACATCATCCGCCCCAAGAAGCACTGGGATTACGAGGCCCTCACCGTCCAATGGAGGGAGAAGGACGAACGGTTAGGAAAAAAATCTGTGAAGGGGTCAATGGGTCAAGCCCGGCTTCCACCTCCTCAACCCCTGCGCCGGTCAATGGGTCGCCAGAATCCTCTCCACGACTTCACCAGAATCCAATCGGTCGACGTCAAAATCGAGACCAAAACCAAGGATAGAGACTTGAATGAGTATAGTCCGTCTGGGTCAAACACCAGCAAGCATGTGTCTTGCAGCCATGAGTTATGTACAGCTGGTCCAAACTGCAAGGGCCCCAAGCAGCCGTGCCCTTACACTATTAAATACTTCTCGAAAAATACATCGAGTTCTGGATTGCTTGTGGAGGATATATTACATCTTGTAGCGGGGAGTAATGGTGTATCAAACAATTCTATTCAGGCCCCTGTGATCATAGGATGTGGTATGAAGCAAAGTGGTGGGTACCTGGATGGCATTGCTCCTGATGGTCTTATGGGTTTAGGACTTGGAGAGGTTTCAGTTCCTAGTTTCCTTGCTAAAGCAGGATTGATCACAAACTCTTTCTCAATGTGCGTTGATGAGGAAGGTTCTGGGAGAACATTTTTTGGGGACCAGGGACCAAATACTCAACAGTCTACATCCTTCTTGCCCTCAAAGGGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

313

Amino Acids

34.25

Weight (kDa)

9.05

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	159 - 296	3.8e-24	Xylanase inhibitor N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10080
fragaria_vesca	FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650
malus_domestica	MD01G1024100.v1.1 MD15G1362800.v1.1
prunus_persica	Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.6G179100_v2.0.a1
pyrus_communis	pycom01g05180 pycom15g32510
rosa_chinensis	RchiOBHm_Chr1g0350111 RchiOBHm_Chr2g0115521 RchiOBHm_Chr2g0129991
rosa_laevigata	RLG00000005996 RLG00000006248 RLG00000015274 RLG00000018190 RLG00000030771
rosa_multiflora	Rmu_sc0005625.1_g000012 Rmu_sc0007210.1_g000001 Rmu_sc0009900.1_g000009 Rmu_sc0021224.1_g000001 Rmu_sc0039462.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064010 Rroxscaffold_1G00064020 Rroxscaffold_2G00123530 Rroxscaffold_2G00128130 Rroxscaffold_2G00129010 Rroxscaffold_3G00229700 Rroxscaffold_5G00344250 Rroxscaffold_7G00197080 Rroxscaffold_7G00197100 Rroxscaffold_7G00217690
rosa_rugosa	Rorug02G0197300 Rorug02G0197300 Rorug02G0197300
rosa_samantha	Rh1CG101200 Rh1CG101300 Rh2AG254900 Rh2AG342200 Rh2BG265700 Rh2CG260100 Rh2DG263000 Rh2DG368300 Rh2DG576100
rosa_wichuraiana	Rw2G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	166
AatII	GACGTC	1 cut(s)	450
Acc36I	ACCTGC	1 cut(s)	166
Acc65I	GGTACC	1 cut(s)	738
AccB1I	GGYRCC	1 cut(s)	738
AccB7I	CCANNNNNTGG	1 cut(s)	234
AccI	GTMKAC	2 cut(s)	444, 911
AccII	CGCG	1 cut(s)	188
AciI	CCGC	2 cut(s)	262, 662
AcsI	RAATTY	2 cut(s)	97, 178
AcyI	GRCGYC	1 cut(s)	447
AfaI	GTAC	3 cut(s)	87, 547, 740
AfiI	CCNNNNNNNGG	6 cut(s)	234, 303, 307, 390, 397, 932
AgsI	TTSAA	3 cut(s)	28, 178, 484
AjnI	CCWGG	3 cut(s)	233, 741, 888
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AluBI	AGCT	4 cut(s)	22, 43, 107, 551
AluI	AGCT	4 cut(s)	22, 43, 107, 551
Alw26I	GTCTC	2 cut(s)	452, 471
AoxI	GGCC	4 cut(s)	231, 288, 568, 696
ApaI	GGGCCC	1 cut(s)	572
ApeKI	GCWGC	5 cut(s)	43, 210, 221, 531, 577
ApoI	RAATTY	2 cut(s)	97, 178
Asp718I	GGTACC	1 cut(s)	738
AspLEI	GCGC	1 cut(s)	390
AspS9I	GGNCC	7 cut(s)	289, 554, 568, 569, 697, 886, 893
AsuC2I	CCSGG	1 cut(s)	364
AsuHPI	GGTGA	4 cut(s)	143, 147, 286, 418
AvaII	GGWCC	3 cut(s)	554, 886, 893
BaeGI	GKGCMC	2 cut(s)	572, 587
BanI	GGYRCC	1 cut(s)	738
BanII	GRGCYC	1 cut(s)	572
BbvI	GCAGC	5 cut(s)	30, 208, 222, 543, 589
BccI	CCATC	2 cut(s)	740, 755
BceAI	ACGGC	1 cut(s)	565
BciT130I	CCWGG	3 cut(s)	235, 743, 890
BclI	TGATCA	2 cut(s)	705, 825
BcnI	CCSGG	1 cut(s)	364
BcoDI	GTCTC	2 cut(s)	452, 471
BfaI	CTAG	3 cut(s)	89, 801, 940
BfuAI	ACCTGC	1 cut(s)	166
BglI	GCCNNNNNGGC	1 cut(s)	230
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	5 cut(s)	44, 211, 222, 532, 578
BlsI	GCNGC	5 cut(s)	45, 212, 223, 533, 579
BmcAI	AGTACT	1 cut(s)	87
Bme1390I	CCNGG	4 cut(s)	235, 364, 743, 890
Bme18I	GGWCC	3 cut(s)	554, 886, 893
BmgT120I	GGNCC	7 cut(s)	289, 554, 568, 569, 697, 886, 893
BmiI	GGNNCC	6 cut(s)	570, 571, 699, 740, 887, 894
BmrFI	CCNGG	4 cut(s)	235, 364, 743, 890
BmrI	ACTGGG	1 cut(s)	286
BmsI	GCATC	1 cut(s)	5
BmuI	ACTGGG	1 cut(s)	286
BpmI	CTGGAG	1 cut(s)	129
BpuMI	CCSGG	1 cut(s)	364
Bsa29I	ATCGAT	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	447
BsaI	GGTCTC	1 cut(s)	452
BsaJI	CCNNGG	3 cut(s)	228, 468, 889
BsaXI	ACNNNNNCTCC	4 cut(s)	209, 239, 658, 688
Bsc4I	CCNNNNNNNGG	6 cut(s)	234, 303, 307, 390, 397, 932
Bse118I	RCCGGY	1 cut(s)	390
Bse1I	ACTGG	1 cut(s)	281
Bse3DI	GCAATG	1 cut(s)	750
BseBI	CCWGG	3 cut(s)	235, 743, 890
BseCI	ATCGAT	1 cut(s)	203
BseDI	CCNNGG	3 cut(s)	228, 468, 889
BseGI	GGATG	5 cut(s)	20, 258, 719, 751, 914
BseLI	CCNNNNNNNGG	6 cut(s)	234, 303, 307, 390, 397, 932
BseMI	GCAATG	1 cut(s)	750
BseNI	ACTGG	1 cut(s)	281
BseRI	GAGGAG	1 cut(s)	366
BseSI	GKGCMC	2 cut(s)	572, 587
BseXI	GCAGC	5 cut(s)	30, 208, 222, 543, 589
BseYI	CCCAGC	2 cut(s)	144, 161
Bsh1236I	CGCG	1 cut(s)	188
Bsh1285I	CGRYCG	1 cut(s)	444
BshFI	GGCC	4 cut(s)	233, 290, 570, 698
BshNI	GGYRCC	1 cut(s)	738
BshVI	ATCGAT	1 cut(s)	203
BsiEI	CGRYCG	1 cut(s)	444
BsiSI	CCGG	2 cut(s)	364, 391
BslFI	GGGAC	2 cut(s)	899, 906
BslI	CCNNNNNNNGG	6 cut(s)	234, 303, 307, 390, 397, 932
BsmAI	GTCTC	2 cut(s)	452, 471
BsmFI	GGGAC	2 cut(s)	899, 906
BsnI	GGCC	4 cut(s)	233, 290, 570, 698
Bso31I	GGTCTC	1 cut(s)	452
Bsp120I	GGGCCC	1 cut(s)	568
Bsp1286I	GDGCHC	2 cut(s)	572, 587
Bsp1407I	TGTACA	1 cut(s)	545
Bsp143I	GATC	3 cut(s)	192, 705, 825
BspACI	CCGC	2 cut(s)	262, 662
BspANI	GGCC	4 cut(s)	233, 290, 570, 698
BspDI	ATCGAT	1 cut(s)	203
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	6 cut(s)	570, 571, 699, 740, 887, 894
BspMI	ACCTGC	1 cut(s)	166
BspT107I	GGYRCC	1 cut(s)	738
BspTNI	GGTCTC	1 cut(s)	452
BsrDI	GCAATG	1 cut(s)	750
BsrFI	RCCGGY	1 cut(s)	390
BsrGI	TGTACA	1 cut(s)	545
BsrI	ACTGG	1 cut(s)	281
BssAI	RCCGGY	1 cut(s)	390
BssECI	CCNNGG	3 cut(s)	228, 468, 889
BssMI	GATC	3 cut(s)	192, 705, 825
BssNI	GRCGYC	1 cut(s)	447
BssT1I	CCWWGG	2 cut(s)	228, 468
Bst2UI	CCWGG	3 cut(s)	235, 743, 890
Bst4CI	ACNGT	3 cut(s)	298, 324, 909
BstACI	GRCGYC	1 cut(s)	447
BstAUI	TGTACA	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	20, 518
BstF5I	GGATG	5 cut(s)	20, 258, 719, 751, 914
BstFNI	CGCG	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	3 cut(s)	195, 708, 828
BstMAI	GTCTC	2 cut(s)	452, 471
BstMBI	GATC	3 cut(s)	192, 705, 825
BstMCI	CGRYCG	1 cut(s)	444
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 230
BstNI	CCWGG	3 cut(s)	235, 743, 890
BstNSI	RCATGY	1 cut(s)	524
BstSCI	CCNGG	4 cut(s)	233, 362, 741, 888
BstSLI	GKGCMC	2 cut(s)	572, 587
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	5 cut(s)	30, 208, 222, 543, 589
BstX2I	RGATCY	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	192
Bsu15I	ATCGAT	1 cut(s)	203
BsuRI	GGCC	4 cut(s)	233, 290, 570, 698
BsuTUI	ATCGAT	1 cut(s)	203
BtsCI	GGATG	5 cut(s)	20, 258, 719, 751, 914
BtsIMutI	CAGTG	1 cut(s)	274
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	2 cut(s)	20, 518
CfoI	GCGC	1 cut(s)	390
Cfr10I	RCCGGY	1 cut(s)	390
Cfr13I	GGNCC	7 cut(s)	289, 554, 568, 569, 697, 886, 893
ClaI	ATCGAT	1 cut(s)	203
CseI	GACGC	2 cut(s)	194, 227
Csp6I	GTAC	3 cut(s)	86, 546, 739
CviAII	CATG	2 cut(s)	521, 536
CviQI	GTAC	3 cut(s)	86, 546, 739
DpnI	GATC	3 cut(s)	194, 707, 827
DpnII	GATC	3 cut(s)	192, 705, 825
EciI	GGCGGA	1 cut(s)	251
Eco130I	CCWWGG	2 cut(s)	228, 468
Eco147I	AGGCCT	1 cut(s)	233
Eco24I	GRGCYC	1 cut(s)	572
Eco31I	GGTCTC	1 cut(s)	452
Eco47I	GGWCC	3 cut(s)	554, 886, 893
EcoO109I	RGGNCCY	4 cut(s)	289, 568, 569, 697
EcoRII	CCWGG	3 cut(s)	233, 741, 888
EcoT14I	CCWWGG	2 cut(s)	228, 468
EcoT38I	GRGCYC	1 cut(s)	572
ErhI	CCWWGG	2 cut(s)	228, 468
FaeI	CATG	2 cut(s)	524, 539
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FaqI	GGGAC	2 cut(s)	899, 906
FatI	CATG	2 cut(s)	520, 535
FauI	CCCGC	1 cut(s)	655
FbaI	TGATCA	2 cut(s)	705, 825
FblI	GTMKAC	2 cut(s)	444, 911
Fnu4HI	GCNGC	5 cut(s)	44, 211, 222, 532, 578
FokI	GGATG	5 cut(s)	27, 245, 726, 758, 901
FriOI	GRGCYC	1 cut(s)	572
Fsp4HI	GCNGC	5 cut(s)	44, 211, 222, 532, 578
FspBI	CTAG	3 cut(s)	89, 801, 940
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	5 cut(s)	44, 211, 222, 532, 578
GsaI	CCCAGC	2 cut(s)	148, 165
GsuI	CTGGAG	1 cut(s)	129
HaeIII	GGCC	4 cut(s)	233, 290, 570, 698
HapII	CCGG	2 cut(s)	364, 391
HgaI	GACGC	2 cut(s)	194, 227
HhaI	GCGC	1 cut(s)	390
Hin1I	GRCGYC	1 cut(s)	447
Hin1II	CATG	2 cut(s)	524, 539
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HincII	GTYRAC	2 cut(s)	253, 445
HindII	GTYRAC	2 cut(s)	253, 445
HinfI	GANTC	3 cut(s)	205, 409, 432
HpaII	CCGG	2 cut(s)	364, 391
HphI	GGTGA	4 cut(s)	143, 147, 286, 418
Hpy166II	GTNNAC	3 cut(s)	253, 445, 912
Hpy188I	TCNGA	2 cut(s)	8, 247
Hpy188III	TCNNGA	4 cut(s)	457, 607, 627, 758
Hpy8I	GTNNAC	3 cut(s)	253, 445, 912
Hpy99I	CGWCG	3 cut(s)	188, 221, 449
HpyAV	CCTTC	5 cut(s)	3, 307, 337, 854, 928
HpyCH4III	ACNGT	3 cut(s)	298, 324, 909
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	3 cut(s)	18, 531, 564
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 230
HpySE526I	ACGT	1 cut(s)	447
Hsp92I	GRCGYC	1 cut(s)	447
Hsp92II	CATG	2 cut(s)	524, 539
HspAI	GCGC	1 cut(s)	388
KpnI	GGTACC	1 cut(s)	742
Ksp22I	TGATCA	2 cut(s)	705, 825
Kzo9I	GATC	3 cut(s)	192, 705, 825
LmnI	GCTCC	1 cut(s)	760
Lsp1109I	GCAGC	5 cut(s)	30, 208, 222, 543, 589
LweI	GCATC	1 cut(s)	5
MaeI	CTAG	3 cut(s)	89, 801, 940
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	3 cut(s)	194, 707, 827
MboI	GATC	3 cut(s)	192, 705, 825
MboII	GAAGA	1 cut(s)	202
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	2 cut(s)	572, 587
MluCI	AATT	4 cut(s)	28, 97, 178, 685
MmeI	TCCRAC	2 cut(s)	35, 99
MseI	TTAA	1 cut(s)	597
MspA1I	CMGCKG	1 cut(s)	551
MspI	CCGG	2 cut(s)	364, 391
MspR9I	CCNGG	4 cut(s)	235, 364, 743, 890
MvaI	CCWGG	3 cut(s)	235, 743, 890
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	2 cut(s)	158, 230
NciI	CCSGG	1 cut(s)	364
NdeII	GATC	3 cut(s)	192, 705, 825
NlaIII	CATG	2 cut(s)	524, 539
NlaIV	GGNNCC	6 cut(s)	570, 571, 699, 740, 887, 894
NmuCI	GTSAC	1 cut(s)	131
NspI	RCATGY	1 cut(s)	524
PaqCI	CACCTGC	1 cut(s)	166
PceI	AGGCCT	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	453
PfeI	GAWTC	3 cut(s)	205, 409, 432
PflMI	CCANNNNNTGG	1 cut(s)	234
PkrI	GCNGC	5 cut(s)	45, 212, 223, 533, 579
Psp6I	CCWGG	3 cut(s)	233, 741, 888
PspFI	CCCAGC	2 cut(s)	144, 161
PspGI	CCWGG	3 cut(s)	233, 741, 888
PspN4I	GGNNCC	6 cut(s)	570, 571, 699, 740, 887, 894
PspOMI	GGGCCC	1 cut(s)	568
PspPI	GGNCC	7 cut(s)	289, 554, 568, 569, 697, 886, 893
PsuI	RGATCY	1 cut(s)	192
PvuII	CAGCTG	1 cut(s)	551
RsaI	GTAC	3 cut(s)	87, 547, 740
RsaNI	GTAC	3 cut(s)	86, 546, 739
SalI	GTCGAC	1 cut(s)	443
SaqAI	TTAA	1 cut(s)	597
SatI	GCNGC	5 cut(s)	44, 211, 222, 532, 578
Sau3AI	GATC	3 cut(s)	192, 705, 825
Sau96I	GGNCC	7 cut(s)	289, 554, 568, 569, 697, 886, 893
ScaI	AGTACT	1 cut(s)	87
ScrFI	CCNGG	4 cut(s)	235, 364, 743, 890
SduI	GDGCHC	2 cut(s)	572, 587
SfaNI	GCATC	1 cut(s)	5
SinI	GGWCC	3 cut(s)	554, 886, 893
Sse9I	AATT	4 cut(s)	28, 97, 178, 685
SseBI	AGGCCT	1 cut(s)	233
SsiI	CCGC	2 cut(s)	262, 662
SspMI	CTAG	3 cut(s)	89, 801, 940
StuI	AGGCCT	1 cut(s)	233
StyD4I	CCNGG	4 cut(s)	233, 362, 741, 888
StyI	CCWWGG	2 cut(s)	228, 468
TaaI	ACNGT	3 cut(s)	298, 324, 909
TaiI	ACGT	1 cut(s)	450
TaqI	TCGA	6 cut(s)	183, 203, 444, 456, 608, 620
TaqII	GACCGA	1 cut(s)	430
TasI	AATT	4 cut(s)	28, 97, 178, 685
TatI	WGTACW	2 cut(s)	85, 545
TfiI	GAWTC	3 cut(s)	205, 409, 432
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	1 cut(s)	281
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	5 cut(s)	43, 210, 221, 531, 577
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	737
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	1 cut(s)	281
Van91I	CCANNNNNTGG	1 cut(s)	234
VpaK11BI	GGWCC	3 cut(s)	554, 886, 893
XapI	RAATTY	2 cut(s)	97, 178
XceI	RCATGY	1 cut(s)	524
XmiI	GTMKAC	2 cut(s)	444, 911
XspI	CTAG	3 cut(s)	89, 801, 940
ZraI	GACGTC	1 cut(s)	448
ZrmI	AGTACT	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.