Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001477

Physical Location & Seq

Genomic Coordinates Forward (+)

80652833 .. 80653168

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG576100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCGGCTCACCGATCTCTCCTCCTTCTCCTTCCCTTACTCGCCTCCCTCCTCCTCTGTAATGCGGCGGCGAACACTCTCTTGTTGCGCCTGATACACCGCTTCTCAGACGAAGCCAAGGTTCTCAAGGCCTCCCGCAGCACCAGCGACGCCAAATGGCTCGGTCGGTGGCCAAGGAGAAACTCCATGGACTACTACCACCTCCTCGTCAACACTGACTTCCACCGCCAGAAGATGAAGCTCGCTGCCATCGCCTCTTTTCGTCATCATCAATTCCAGTTCCTTTTCCCCTCTGAAGGTAGCAACACGGCATCGTTTGGCAATGACTTCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

111

Amino Acids

12.66

Weight (kDa)

10.35

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10080
fragaria_vesca	FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650
malus_domestica	MD01G1024100.v1.1 MD15G1362800.v1.1
prunus_persica	Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.6G179100_v2.0.a1
pyrus_communis	pycom01g05180 pycom15g32510
rosa_chinensis	RchiOBHm_Chr1g0350111 RchiOBHm_Chr2g0115521 RchiOBHm_Chr2g0129991
rosa_laevigata	RLG00000005996 RLG00000006248 RLG00000015274 RLG00000018190 RLG00000030771
rosa_multiflora	Rmu_sc0005625.1_g000012 Rmu_sc0007210.1_g000001 Rmu_sc0009900.1_g000009 Rmu_sc0021224.1_g000001 Rmu_sc0039462.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064010 Rroxscaffold_1G00064020 Rroxscaffold_2G00123530 Rroxscaffold_2G00128130 Rroxscaffold_2G00129010 Rroxscaffold_3G00229700 Rroxscaffold_5G00344250 Rroxscaffold_7G00197080 Rroxscaffold_7G00197100 Rroxscaffold_7G00217690
rosa_rugosa	Rorug02G0197300 Rorug02G0197300 Rorug02G0197300
rosa_samantha	Rh1CG101200 Rh1CG101300 Rh2AG254900 Rh2AG342200 Rh2BG265700 Rh2CG260100 Rh2DG263000 Rh2DG368300 Rh2DG576100
rosa_wichuraiana	Rw2G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	5, 65, 68, 100, 136, 226
AcoI	YGGCCR	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	315
AcyI	GRCGYC	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	296
AluBI	AGCT	1 cut(s)	241
AluI	AGCT	1 cut(s)	241
AoxI	GGCC	2 cut(s)	129, 170
ApeKI	GCWGC	2 cut(s)	138, 245
AspLEI	GCGC	1 cut(s)	90
BalI	TGGCCA	1 cut(s)	172
BbvI	GCAGC	2 cut(s)	150, 232
BccI	CCATC	1 cut(s)	257
BceAI	ACGGC	1 cut(s)	324
BcgI	CGANNNNNNTGC	1 cut(s)	310
BisI	GCNGC	5 cut(s)	6, 66, 69, 139, 246
BlsI	GCNGC	5 cut(s)	7, 67, 70, 140, 247
BmsI	GCATC	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	3 cut(s)	117, 173, 186
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	328
BseDI	CCNNGG	3 cut(s)	117, 173, 186
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	4 cut(s)	11, 41, 44, 194
BseXI	GCAGC	2 cut(s)	150, 232
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	131, 172
BsiEI	CGRYCG	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	296
BsnI	GGCC	2 cut(s)	131, 172
Bsp143I	GATC	1 cut(s)	14
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	6 cut(s)	5, 65, 68, 100, 136, 226
BspANI	GGCC	2 cut(s)	131, 172
BspCNI	CTCAG	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	3 cut(s)	117, 173, 186
BssMI	GATC	1 cut(s)	14
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	3 cut(s)	117, 173, 186
BstACI	GRCGYC	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	1 cut(s)	106
BstDSI	CCRYGG	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 251
BstV1I	GCAGC	2 cut(s)	150, 232
BsuRI	GGCC	2 cut(s)	131, 172
BtgI	CCRYGG	1 cut(s)	186
BtgZI	GCGATG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	243
CfoI	GCGC	1 cut(s)	90
CseI	GACGC	1 cut(s)	158
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	7 cut(s)	8, 116, 131, 160, 172, 241, 333
CviKI_1	RGCY	7 cut(s)	8, 116, 131, 160, 172, 241, 333
DdeI	CTNAG	1 cut(s)	106
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
EaeI	YGGCCR	1 cut(s)	170
Eco130I	CCWWGG	3 cut(s)	117, 173, 186
Eco147I	AGGCCT	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	315
EcoT14I	CCWWGG	3 cut(s)	117, 173, 186
ErhI	CCWWGG	3 cut(s)	117, 173, 186
FaeI	CATG	1 cut(s)	190
FaiI	YATR	1 cut(s)	188
FatI	CATG	1 cut(s)	186
FauI	CCCGC	1 cut(s)	143
Fnu4HI	GCNGC	5 cut(s)	6, 66, 69, 139, 246
Fsp4HI	GCNGC	5 cut(s)	6, 66, 69, 139, 246
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	5 cut(s)	6, 66, 69, 139, 246
HaeIII	GGCC	2 cut(s)	131, 172
HgaI	GACGC	1 cut(s)	158
HhaI	GCGC	1 cut(s)	90
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	1 cut(s)	190
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	109, 295
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	3 cut(s)	35, 41, 290
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 251
HpyF3I	CTNAG	1 cut(s)	106
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	190
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	14
LpnPI	CCDG	4 cut(s)	104, 157, 242, 290
Lsp1109I	GCAGC	2 cut(s)	150, 232
LweI	GCATC	1 cut(s)	320
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	1 cut(s)	244
MlsI	TGGCCA	1 cut(s)	172
MluCI	AATT	1 cut(s)	272
MluNI	TGGCCA	1 cut(s)	172
Mox20I	TGGCCA	1 cut(s)	172
MscI	TGGCCA	1 cut(s)	172
Msp20I	TGGCCA	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	144, 251
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	1 cut(s)	190
PceI	AGGCCT	1 cut(s)	131
PkrI	GCNGC	5 cut(s)	7, 67, 70, 140, 247
SatI	GCNGC	5 cut(s)	6, 66, 69, 139, 246
Sau3AI	GATC	1 cut(s)	14
SetI	ASST	4 cut(s)	123, 204, 243, 301
SfaNI	GCATC	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	272
SseBI	AGGCCT	1 cut(s)	131
SsiI	CCGC	6 cut(s)	5, 65, 68, 100, 136, 226
StuI	AGGCCT	1 cut(s)	131
StyI	CCWWGG	3 cut(s)	117, 173, 186
TaqII	GACCGA	1 cut(s)	152
TasI	AATT	1 cut(s)	272
TauI	GCSGC	3 cut(s)	8, 68, 71
TscAI	CASTG	1 cut(s)	220
TseI	GCWGC	2 cut(s)	138, 245
TspDTI	ATGAA	1 cut(s)	251
TspRI	CASTG	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.