Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001477

Physical Location & Seq

Genomic Coordinates Forward (+)

85869346 .. 85876685

Gene Structure 7340 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00064010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGAGGCCACAAGTGTATCAAATCAAGTGGAAGCAATGGCCGGTAACTTACTGAGTGCATGTTCTGAAACACAAACATCTTCAACAGGTTTCTCCAGATCCCCCTACCTCGTTTCAGAAGTTAGTTTATACTTCTCGGGACTGCCACCTCCTGGTTCTAGGTCTCCACCACATGCTTATAGGGATCCACCTCCTGCTATTAGCTTTGATGACACAACTACGGTAACCGACTCTCCAAGGCTCTTCGCTGAAACCATTAGGCCAACAGGAGAACTCTTTCTTAAAGGGAAGATTCCCTGGTCTCCATCTTATCTCCCTCTCCCCGCTCTTCCCTCTAGATCTTACTTACTCGAGCTCTCTCACTCGGAGCGGCCTCCATGGCGGCTCGGAGATCTCTCGCTCTTTCTCCTTCCCCTACACTCTCTCCTCCTCCGTACAGCATCAACGATTACGCTCTCCCCGCGCCTCATACACCGCTTCTCCGACGAGGCCAAGGCTCTCAAGGCCTCCCACAAGACCGGCGACGCCAAATGGCTCGGTCGGTGGCCACAGAGAACTCTATGGACTACTATCACCTCTTCGCCGGCCACCGACTTCCGGTGCCGAAAGATGAAGCTCGGCACTTTTTGTCATCGAGTTCCAGTTCCTCTTCCCTCCGAAGGCAGCAACACGGCGTCGTTGGCAATGACTTTGGTGGTTGCATTATACGTGGACTGTTATATGGATGCCGAATGTTTCGTTTCTCGGTGGAGGAAGAGAGATGACGACGACCCACCTGGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

261

Amino Acids

28.92

Weight (kDa)

8.6

Isoelectric Point (pI)

60.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10080
fragaria_vesca	FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650
malus_domestica	MD01G1024100.v1.1 MD15G1362800.v1.1
prunus_persica	Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.6G179100_v2.0.a1
pyrus_communis	pycom01g05180 pycom15g32510
rosa_chinensis	RchiOBHm_Chr1g0350111 RchiOBHm_Chr2g0115521 RchiOBHm_Chr2g0129991
rosa_laevigata	RLG00000005996 RLG00000006248 RLG00000015274 RLG00000018190 RLG00000030771
rosa_multiflora	Rmu_sc0005625.1_g000012 Rmu_sc0007210.1_g000001 Rmu_sc0009900.1_g000009 Rmu_sc0021224.1_g000001 Rmu_sc0039462.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064010 Rroxscaffold_1G00064020 Rroxscaffold_2G00123530 Rroxscaffold_2G00128130 Rroxscaffold_2G00129010 Rroxscaffold_3G00229700 Rroxscaffold_5G00344250 Rroxscaffold_7G00197080 Rroxscaffold_7G00197100 Rroxscaffold_7G00217690
rosa_rugosa	Rorug02G0197300 Rorug02G0197300 Rorug02G0197300
rosa_samantha	Rh1CG101200 Rh1CG101300 Rh2AG254900 Rh2AG342200 Rh2BG265700 Rh2CG260100 Rh2DG263000 Rh2DG368300 Rh2DG576100
rosa_wichuraiana	Rw2G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	600
AccB7I	CCANNNNNTGG	1 cut(s)	152
AccBSI	CCGCTC	2 cut(s)	326, 370
AccII	CGCG	1 cut(s)	463
AciI	CCGC	5 cut(s)	324, 370, 382, 461, 475
AclWI	GGATC	3 cut(s)	93, 179, 192
AcoI	YGGCCR	3 cut(s)	39, 545, 585
AcyI	GRCGYC	2 cut(s)	525, 674
AfaI	GTAC	1 cut(s)	436
AfiI	CCNNNNNNNGG	3 cut(s)	152, 597, 659
AgsI	TTSAA	1 cut(s)	84
AjnI	CCWGG	3 cut(s)	151, 296, 775
AluBI	AGCT	3 cut(s)	204, 355, 616
AluI	AGCT	3 cut(s)	204, 355, 616
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	2 cut(s)	168, 306
AlwI	GGATC	3 cut(s)	93, 179, 192
Ama87I	CYCGRG	2 cut(s)	136, 350
AoxI	GGCC	8 cut(s)	6, 39, 260, 371, 489, 504, 545, 585
ApeKI	GCWGC	1 cut(s)	663
Asp700I	GAANNNNTTC	1 cut(s)	276
AspLEI	GCGC	1 cut(s)	465
AsuHPI	GGTGA	1 cut(s)	565
AvaI	CYCGRG	2 cut(s)	136, 350
BaeI	ACNNNNGTAYC	1 cut(s)	33
BalI	TGGCCA	1 cut(s)	547
BamHI	GGATCC	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	600
BanII	GRGCYC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	675
BccI	CCATC	1 cut(s)	313
BceAI	ACGGC	1 cut(s)	687
BciT130I	CCWGG	3 cut(s)	153, 298, 777
BcoDI	GTCTC	2 cut(s)	168, 306
BfaI	CTAG	2 cut(s)	159, 336
BglI	GCCNNNNNGGC	1 cut(s)	379
BglII	AGATCT	2 cut(s)	338, 391
BisI	GCNGC	3 cut(s)	371, 383, 664
BlsI	GCNGC	3 cut(s)	372, 384, 665
Bme1390I	CCNGG	3 cut(s)	153, 298, 777
BmeT110I	CYCGRG	2 cut(s)	136, 350
BmiI	GGNNCC	2 cut(s)	186, 602
BmrFI	CCNGG	3 cut(s)	153, 298, 777
BmsI	GCATC	2 cut(s)	449, 715
BpmI	CTGGAG	1 cut(s)	79
BpuEI	CTTGAG	1 cut(s)	485
BsaAI	YACGTR	1 cut(s)	709
BsaHI	GRCGYC	2 cut(s)	525, 674
BsaI	GGTCTC	2 cut(s)	168, 306
BsaJI	CCNNGG	4 cut(s)	236, 296, 377, 492
BsaWI	WCCGGW	1 cut(s)	597
BsaXI	ACNNNNNCTCC	6 cut(s)	217, 247, 408, 438, 464, 494
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 597, 659
Bse118I	RCCGGY	3 cut(s)	41, 518, 583
Bse1I	ACTGG	1 cut(s)	641
Bse3DI	GCAATG	2 cut(s)	42, 690
BseBI	CCWGG	3 cut(s)	153, 298, 777
BseDI	CCNNGG	4 cut(s)	236, 296, 377, 492
BseGI	GGATG	1 cut(s)	730
BseLI	CCNNNNNNNGG	3 cut(s)	152, 597, 659
BseMI	GCAATG	2 cut(s)	42, 690
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	1 cut(s)	641
BseRI	GAGGAG	2 cut(s)	416, 419
BseXI	GCAGC	1 cut(s)	675
Bsh1236I	CGCG	1 cut(s)	463
Bsh1285I	CGRYCG	1 cut(s)	541
BshFI	GGCC	8 cut(s)	8, 41, 262, 373, 491, 506, 547, 587
BshNI	GGYRCC	1 cut(s)	600
BsiEI	CGRYCG	1 cut(s)	541
BsiHKAI	GWGCWC	1 cut(s)	357
BsiHKCI	CYCGRG	2 cut(s)	136, 350
BsiSI	CCGG	4 cut(s)	42, 519, 584, 598
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	3 cut(s)	152, 597, 659
BsmAI	GTCTC	2 cut(s)	168, 306
BsmFI	GGGAC	1 cut(s)	153
BsnI	GGCC	8 cut(s)	8, 41, 262, 373, 491, 506, 547, 587
Bso31I	GGTCTC	2 cut(s)	168, 306
BsoBI	CYCGRG	2 cut(s)	136, 350
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	4 cut(s)	98, 184, 338, 391
Bsp19I	CCATGG	1 cut(s)	377
BspACI	CCGC	5 cut(s)	324, 370, 382, 461, 475
BspANI	GGCC	8 cut(s)	8, 41, 262, 373, 491, 506, 547, 587
BspCNI	CTCAG	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	186, 602
BspPI	GGATC	3 cut(s)	93, 179, 192
BspQI	GCTCTTC	2 cut(s)	248, 333
BspT107I	GGYRCC	1 cut(s)	600
BspTNI	GGTCTC	2 cut(s)	168, 306
BsrBI	CCGCTC	2 cut(s)	326, 370
BsrDI	GCAATG	2 cut(s)	42, 690
BsrFI	RCCGGY	3 cut(s)	41, 518, 583
BsrI	ACTGG	1 cut(s)	641
BssAI	RCCGGY	3 cut(s)	41, 518, 583
BssECI	CCNNGG	4 cut(s)	236, 296, 377, 492
BssMI	GATC	4 cut(s)	98, 184, 338, 391
BssNI	GRCGYC	2 cut(s)	525, 674
BssT1I	CCWWGG	3 cut(s)	236, 377, 492
Bst2UI	CCWGG	3 cut(s)	153, 298, 777
Bst4CI	ACNGT	2 cut(s)	223, 716
Bst6I	CTCTTC	5 cut(s)	248, 333, 583, 654, 749
BstACI	GRCGYC	2 cut(s)	525, 674
BstBAI	YACGTR	1 cut(s)	709
BstC8I	GCNNGC	1 cut(s)	585
BstDEI	CTNAG	1 cut(s)	53
BstDSI	CCRYGG	1 cut(s)	377
BstEII	GGTNACC	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	730
BstFNI	CGCG	1 cut(s)	463
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	4 cut(s)	101, 187, 341, 394
BstMAI	GTCTC	2 cut(s)	168, 306
BstMBI	GATC	4 cut(s)	98, 184, 338, 391
BstMCI	CGRYCG	1 cut(s)	541
BstMWI	GCNNNNNNNGC	4 cut(s)	379, 460, 503, 680
BstNI	CCWGG	3 cut(s)	153, 298, 777
BstNSI	RCATGY	2 cut(s)	63, 176
BstPI	GGTNACC	1 cut(s)	223
BstSCI	CCNGG	3 cut(s)	151, 296, 775
BstUI	CGCG	1 cut(s)	463
BstV1I	GCAGC	1 cut(s)	675
BstX2I	RGATCY	4 cut(s)	98, 184, 338, 391
BstYI	RGATCY	4 cut(s)	98, 184, 338, 391
BsuRI	GGCC	8 cut(s)	8, 41, 262, 373, 491, 506, 547, 587
BtgI	CCRYGG	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	730
Cac8I	GCNNGC	1 cut(s)	585
CfoI	GCGC	1 cut(s)	465
Cfr10I	RCCGGY	3 cut(s)	41, 518, 583
CseI	GACGC	2 cut(s)	533, 663
Csp6I	GTAC	1 cut(s)	435
CspCI	CAANNNNNGTGG	2 cut(s)	9, 44
CviAII	CATG	3 cut(s)	60, 173, 378
CviQI	GTAC	1 cut(s)	435
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	4 cut(s)	100, 186, 340, 393
DpnII	GATC	4 cut(s)	98, 184, 338, 391
EaeI	YGGCCR	3 cut(s)	39, 545, 585
Eam1104I	CTCTTC	5 cut(s)	248, 333, 583, 654, 749
EarI	CTCTTC	5 cut(s)	248, 333, 583, 654, 749
Ecl136II	GAGCTC	1 cut(s)	355
Eco130I	CCWWGG	3 cut(s)	236, 377, 492
Eco147I	AGGCCT	1 cut(s)	506
Eco24I	GRGCYC	1 cut(s)	357
Eco31I	GGTCTC	2 cut(s)	168, 306
Eco53kI	GAGCTC	1 cut(s)	355
Eco88I	CYCGRG	2 cut(s)	136, 350
Eco91I	GGTNACC	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	355
EcoO65I	GGTNACC	1 cut(s)	223
EcoRII	CCWGG	3 cut(s)	151, 296, 775
EcoT14I	CCWWGG	3 cut(s)	236, 377, 492
EcoT38I	GRGCYC	1 cut(s)	357
ErhI	CCWWGG	3 cut(s)	236, 377, 492
FaeI	CATG	3 cut(s)	63, 176, 381
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	3 cut(s)	59, 172, 377
FauI	CCCGC	2 cut(s)	331, 468
Fnu4HI	GCNGC	3 cut(s)	371, 383, 664
FokI	GGATG	1 cut(s)	737
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	3 cut(s)	371, 383, 664
FspBI	CTAG	2 cut(s)	159, 336
GlaI	GCGC	1 cut(s)	464
GluI	GCNGC	3 cut(s)	371, 383, 664
GsuI	CTGGAG	1 cut(s)	79
HaeIII	GGCC	8 cut(s)	8, 41, 262, 373, 491, 506, 547, 587
HapII	CCGG	4 cut(s)	42, 519, 584, 598
HgaI	GACGC	2 cut(s)	533, 663
HhaI	GCGC	1 cut(s)	465
Hin1I	GRCGYC	2 cut(s)	525, 674
Hin1II	CATG	3 cut(s)	63, 176, 381
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HinfI	GANTC	2 cut(s)	230, 292
HpaII	CCGG	4 cut(s)	42, 519, 584, 598
HphI	GGTGA	1 cut(s)	565
Hpy166II	GTNNAC	1 cut(s)	712
Hpy188I	TCNGA	6 cut(s)	67, 118, 367, 389, 484, 658
Hpy188III	TCNNGA	3 cut(s)	96, 138, 336
Hpy8I	GTNNAC	1 cut(s)	712
Hpy99I	CGWCG	4 cut(s)	488, 527, 679, 770
HpyAV	CCTTC	2 cut(s)	419, 653
HpyCH4III	ACNGT	2 cut(s)	223, 716
HpyCH4IV	ACGT	1 cut(s)	708
HpyCH4V	TGCA	2 cut(s)	59, 701
HpyF10VI	GCNNNNNNNGC	4 cut(s)	379, 460, 503, 680
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	1 cut(s)	708
Hsp92I	GRCGYC	2 cut(s)	525, 674
Hsp92II	CATG	3 cut(s)	63, 176, 381
HspAI	GCGC	1 cut(s)	463
KroI	GCCGGC	1 cut(s)	583
KroNI	GCCGGC	1 cut(s)	585
Kzo9I	GATC	4 cut(s)	98, 184, 338, 391
LguI	GCTCTTC	2 cut(s)	248, 333
LmnI	GCTCC	1 cut(s)	367
Lsp1109I	GCAGC	1 cut(s)	675
LweI	GCATC	2 cut(s)	449, 715
MaeI	CTAG	2 cut(s)	159, 336
MaeII	ACGT	1 cut(s)	708
MaeIII	GTNAC	2 cut(s)	44, 223
MalI	GATC	4 cut(s)	100, 186, 340, 393
MbiI	CCGCTC	2 cut(s)	326, 370
MboI	GATC	4 cut(s)	98, 184, 338, 391
MboII	GAAGA	7 cut(s)	72, 235, 301, 320, 570, 641, 766
MflI	RGATCY	4 cut(s)	98, 184, 338, 391
MhlI	GDGCHC	1 cut(s)	357
MlsI	TGGCCA	1 cut(s)	547
MluCI	AATT	1 cut(s)	781
MluNI	TGGCCA	1 cut(s)	547
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	1 cut(s)	507
Mox20I	TGGCCA	1 cut(s)	547
MroNI	GCCGGC	1 cut(s)	583
MroXI	GAANNNNTTC	1 cut(s)	276
MscI	TGGCCA	1 cut(s)	547
MseI	TTAA	1 cut(s)	282
Msp20I	TGGCCA	1 cut(s)	547
MspI	CCGG	4 cut(s)	42, 519, 584, 598
MspR9I	CCNGG	3 cut(s)	153, 298, 777
MvaI	CCWGG	3 cut(s)	153, 298, 777
MvnI	CGCG	1 cut(s)	463
MwoI	GCNNNNNNNGC	4 cut(s)	379, 460, 503, 680
NaeI	GCCGGC	1 cut(s)	585
NcoI	CCATGG	1 cut(s)	377
NdeII	GATC	4 cut(s)	98, 184, 338, 391
NgoMIV	GCCGGC	1 cut(s)	583
NlaIII	CATG	3 cut(s)	63, 176, 381
NlaIV	GGNNCC	2 cut(s)	186, 602
NmeAIII	GCCGAG	1 cut(s)	597
NspI	RCATGY	2 cut(s)	63, 176
PaeR7I	CTCGAG	1 cut(s)	350
PceI	AGGCCT	1 cut(s)	506
PciSI	GCTCTTC	2 cut(s)	248, 333
PdiI	GCCGGC	1 cut(s)	585
PdmI	GAANNNNTTC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	292
PflMI	CCANNNNNTGG	1 cut(s)	152
PkrI	GCNGC	3 cut(s)	372, 384, 665
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
Ppu21I	YACGTR	1 cut(s)	709
Psp124BI	GAGCTC	1 cut(s)	357
Psp6I	CCWGG	3 cut(s)	151, 296, 775
PspEI	GGTNACC	1 cut(s)	223
PspGI	CCWGG	3 cut(s)	151, 296, 775
PspN4I	GGNNCC	2 cut(s)	186, 602
PspXI	VCTCGAGB	1 cut(s)	350
PsuI	RGATCY	4 cut(s)	98, 184, 338, 391
RsaI	GTAC	1 cut(s)	436
RsaNI	GTAC	1 cut(s)	435
SacI	GAGCTC	1 cut(s)	357
SapI	GCTCTTC	2 cut(s)	248, 333
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	3 cut(s)	371, 383, 664
Sau3AI	GATC	4 cut(s)	98, 184, 338, 391
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	3 cut(s)	153, 298, 777
SduI	GDGCHC	1 cut(s)	357
SfaNI	GCATC	2 cut(s)	449, 715
Sfr274I	CTCGAG	1 cut(s)	350
SlaI	CTCGAG	1 cut(s)	350
SmlI	CTYRAG	2 cut(s)	350, 500
SmoI	CTYRAG	2 cut(s)	350, 500
Sse9I	AATT	1 cut(s)	781
SseBI	AGGCCT	1 cut(s)	506
SsiI	CCGC	5 cut(s)	324, 370, 382, 461, 475
SspMI	CTAG	2 cut(s)	159, 336
SstI	GAGCTC	1 cut(s)	357
StuI	AGGCCT	1 cut(s)	506
StyD4I	CCNGG	3 cut(s)	151, 296, 775
StyI	CCWWGG	3 cut(s)	236, 377, 492
TaaI	ACNGT	2 cut(s)	223, 716
TaiI	ACGT	1 cut(s)	711
TaqI	TCGA	2 cut(s)	351, 634
TaqII	GACCGA	1 cut(s)	527
TasI	AATT	1 cut(s)	781
TauI	GCSGC	2 cut(s)	373, 385
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseI	GCWGC	1 cut(s)	663
TspDTI	ATGAA	1 cut(s)	626
TspGWI	ACGGA	1 cut(s)	422
Van91I	CCANNNNNTGG	1 cut(s)	152
XbaI	TCTAGA	1 cut(s)	335
XceI	RCATGY	2 cut(s)	63, 176
XhoI	CTCGAG	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	2 cut(s)	159, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.