Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001477

Physical Location & Seq

Genomic Coordinates Reverse (-)

67153322 .. 67154050

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030771

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCGGCTCACCGATCTCTCCTTCTTCTCCTTCCCTTACTCGCCTCCCTCCTCCTCTGTAATGCAGCTGCGATCACTCTCTCGTCGCTCCTCATACACTGGTTCTCCGACGAAGCCAAGGATCTCAAGGCCTCCCGCAACACCGGCGACACCAAATGGCTTGGTCAGTGGCCACGGAGAAACTCCATGGACTACTACCACCTCCTCATCAACACCGACTTTCAGCGCCAGAAGATGAAGCTCGCCGCCGCTACCTCTCCTCATCATCATCAGTTCCAGTTCCTTTTCCCCTCTTTAAAGGCAGCAACACGGCATCGTTTGGCAATGACTTCGGCTGATCCGTTGCATTATACGTGGATTGATATAGGGAAGCCGAATGCTTCGTCTCTGCCCCAATGCGGCTTTGAAGTCTGCCCACCACATGTTCGACGAAAGTCCCCTATGAACTTTGGCTTTGCTATCGCTTTGATCTTCAAATGGGCTTTCTGGGACCTTCGTTGTTGCTCGTGCTGGTGTCGCCGGAGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

177

Amino Acids

20.25

Weight (kDa)

9.83

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10080
fragaria_vesca	FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650
malus_domestica	MD01G1024100.v1.1 MD15G1362800.v1.1
prunus_persica	Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.6G179100_v2.0.a1
pyrus_communis	pycom01g05180 pycom15g32510
rosa_chinensis	RchiOBHm_Chr1g0350111 RchiOBHm_Chr2g0115521 RchiOBHm_Chr2g0129991
rosa_laevigata	RLG00000005996 RLG00000006248 RLG00000015274 RLG00000018190 RLG00000030771
rosa_multiflora	Rmu_sc0005625.1_g000012 Rmu_sc0007210.1_g000001 Rmu_sc0009900.1_g000009 Rmu_sc0021224.1_g000001 Rmu_sc0039462.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064010 Rroxscaffold_1G00064020 Rroxscaffold_2G00123530 Rroxscaffold_2G00128130 Rroxscaffold_2G00129010 Rroxscaffold_3G00229700 Rroxscaffold_5G00344250 Rroxscaffold_7G00197080 Rroxscaffold_7G00197100 Rroxscaffold_7G00217690
rosa_rugosa	Rorug02G0197300 Rorug02G0197300 Rorug02G0197300
rosa_samantha	Rh1CG101200 Rh1CG101300 Rh2AG254900 Rh2AG342200 Rh2BG265700 Rh2CG260100 Rh2DG263000 Rh2DG368300 Rh2DG576100
rosa_wichuraiana	Rw2G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	5, 136, 246, 249, 399
AclWI	GGATC	2 cut(s)	129, 332
AcoI	YGGCCR	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	398
AflIII	ACRYGT	1 cut(s)	421
AgsI	TTSAA	2 cut(s)	407, 475
AluBI	AGCT	2 cut(s)	68, 241
AluI	AGCT	2 cut(s)	68, 241
Alw26I	GTCTC	1 cut(s)	390
AlwI	GGATC	2 cut(s)	129, 332
AoxI	GGCC	2 cut(s)	129, 170
ApeKI	GCWGC	3 cut(s)	65, 68, 302
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	1 cut(s)	490
AvaII	GGWCC	1 cut(s)	490
BalI	TGGCCA	1 cut(s)	172
BauI	CACGAG	1 cut(s)	505
BbvI	GCAGC	3 cut(s)	55, 77, 314
BceAI	ACGGC	1 cut(s)	326
BcgI	CGANNNNNNTGC	2 cut(s)	312, 346
BcoDI	GTCTC	1 cut(s)	390
BfoI	RGCGCY	1 cut(s)	229
BisI	GCNGC	7 cut(s)	6, 66, 69, 246, 249, 303, 400
BlsI	GCNGC	7 cut(s)	7, 67, 70, 247, 250, 304, 401
Bme18I	GGWCC	1 cut(s)	490
BmgT120I	GGNCC	1 cut(s)	490
BmiI	GGNNCC	1 cut(s)	491
BmsI	GCATC	1 cut(s)	322
BoxI	GACNNNNGTC	1 cut(s)	433
BpuEI	CTTGAG	1 cut(s)	110
BsaAI	YACGTR	1 cut(s)	354
BsaJI	CCNNGG	3 cut(s)	117, 173, 186
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	2 cut(s)	104, 277
Bse3DI	GCAATG	1 cut(s)	330
BseDI	CCNNGG	3 cut(s)	117, 173, 186
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseMI	GCAATG	1 cut(s)	330
BseNI	ACTGG	2 cut(s)	104, 277
BseRI	GAGGAG	5 cut(s)	41, 44, 80, 194, 249
BseXI	GCAGC	3 cut(s)	55, 77, 314
BshFI	GGCC	2 cut(s)	131, 172
BsiSI	CCGG	2 cut(s)	144, 520
BslFI	GGGAC	2 cut(s)	421, 503
BslI	CCNNNNNNNGG	1 cut(s)	398
BsmAI	GTCTC	1 cut(s)	390
BsmBI	CGTCTC	1 cut(s)	390
BsmFI	GGGAC	2 cut(s)	421, 503
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	131, 172
Bsp143I	GATC	5 cut(s)	14, 72, 121, 337, 468
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	5 cut(s)	5, 136, 246, 249, 399
BspANI	GGCC	2 cut(s)	131, 172
BspLI	GGNNCC	1 cut(s)	491
BspPI	GGATC	2 cut(s)	129, 332
BsrDI	GCAATG	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	104, 277
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	3 cut(s)	117, 173, 186
BssMI	GATC	5 cut(s)	14, 72, 121, 337, 468
BssSI	CACGAG	1 cut(s)	505
BssT1I	CCWWGG	2 cut(s)	117, 186
Bst2BI	CACGAG	1 cut(s)	505
BstBAI	YACGTR	1 cut(s)	354
BstC8I	GCNNGC	1 cut(s)	243
BstDSI	CCRYGG	2 cut(s)	173, 186
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	5 cut(s)	17, 75, 124, 340, 471
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	5 cut(s)	14, 72, 121, 337, 468
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 516
BstNSI	RCATGY	1 cut(s)	425
BstPAI	GACNNNNGTC	1 cut(s)	433
BstV1I	GCAGC	3 cut(s)	55, 77, 314
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	131, 172
BtgI	CCRYGG	2 cut(s)	173, 186
BtsIMutI	CAGTG	2 cut(s)	97, 173
Cac8I	GCNNGC	1 cut(s)	243
CfoI	GCGC	1 cut(s)	228
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	490
CviAII	CATG	2 cut(s)	187, 422
DpnI	GATC	5 cut(s)	16, 74, 123, 339, 470
DpnII	GATC	5 cut(s)	14, 72, 121, 337, 468
DraI	TTTAAA	1 cut(s)	297
EaeI	YGGCCR	1 cut(s)	170
Eco130I	CCWWGG	2 cut(s)	117, 186
Eco147I	AGGCCT	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	490
EcoO109I	RGGNCCY	1 cut(s)	490
EcoT14I	CCWWGG	2 cut(s)	117, 186
ErhI	CCWWGG	2 cut(s)	117, 186
Esp3I	CGTCTC	1 cut(s)	390
FaeI	CATG	2 cut(s)	190, 425
FaiI	YATR	6 cut(s)	95, 188, 351, 365, 423, 443
FaqI	GGGAC	2 cut(s)	421, 503
FatI	CATG	2 cut(s)	186, 421
FauI	CCCGC	1 cut(s)	143
Fnu4HI	GCNGC	7 cut(s)	6, 66, 69, 246, 249, 303, 400
Fsp4HI	GCNGC	7 cut(s)	6, 66, 69, 246, 249, 303, 400
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	7 cut(s)	6, 66, 69, 246, 249, 303, 400
HaeII	RGCGCY	1 cut(s)	229
HaeIII	GGCC	2 cut(s)	131, 172
HapII	CCGG	2 cut(s)	144, 520
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	190, 425
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HpaII	CCGG	2 cut(s)	144, 520
Hpy188I	TCNGA	1 cut(s)	109
Hpy99I	CGWCG	3 cut(s)	88, 113, 432
HpyAV	CCTTC	3 cut(s)	32, 41, 503
HpyCH4IV	ACGT	1 cut(s)	353
HpyCH4V	TGCA	2 cut(s)	65, 346
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 516
HpySE526I	ACGT	1 cut(s)	353
Hsp92II	CATG	2 cut(s)	190, 425
HspAI	GCGC	1 cut(s)	226
Kzo9I	GATC	5 cut(s)	14, 72, 121, 337, 468
LmnI	GCTCC	1 cut(s)	93
LpnPI	CCDG	6 cut(s)	85, 157, 242, 290, 472, 496
Lsp1109I	GCAGC	3 cut(s)	55, 77, 314
LweI	GCATC	1 cut(s)	322
MaeII	ACGT	1 cut(s)	353
MalI	GATC	5 cut(s)	16, 74, 123, 339, 470
MboI	GATC	5 cut(s)	14, 72, 121, 337, 468
MboII	GAAGA	3 cut(s)	17, 244, 463
MflI	RGATCY	1 cut(s)	121
MlsI	TGGCCA	1 cut(s)	172
MluNI	TGGCCA	1 cut(s)	172
MmeI	TCCRAC	1 cut(s)	132
Mox20I	TGGCCA	1 cut(s)	172
MscI	TGGCCA	1 cut(s)	172
MseI	TTAA	1 cut(s)	296
Msp20I	TGGCCA	1 cut(s)	172
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	2 cut(s)	144, 520
Mva1269I	GAATGC	1 cut(s)	382
MwoI	GCNNNNNNNGC	2 cut(s)	144, 516
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	5 cut(s)	14, 72, 121, 337, 468
NlaIII	CATG	2 cut(s)	190, 425
NlaIV	GGNNCC	1 cut(s)	491
NspI	RCATGY	1 cut(s)	425
PceI	AGGCCT	1 cut(s)	131
PciI	ACATGT	1 cut(s)	421
PcsI	WCGNNNNNNNCGW	1 cut(s)	338
PctI	GAATGC	1 cut(s)	382
PkrI	GCNGC	7 cut(s)	7, 67, 70, 247, 250, 304, 401
Ppu21I	YACGTR	1 cut(s)	354
PpuMI	RGGWCCY	1 cut(s)	490
PscI	ACATGT	1 cut(s)	421
PshAI	GACNNNNGTC	1 cut(s)	433
Psp5II	RGGWCCY	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	491
PspPI	GGNCC	1 cut(s)	490
PspPPI	RGGWCCY	1 cut(s)	490
PsuI	RGATCY	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	7 cut(s)	6, 66, 69, 246, 249, 303, 400
Sau3AI	GATC	5 cut(s)	14, 72, 121, 337, 468
Sau96I	GGNCC	1 cut(s)	490
SetI	ASST	6 cut(s)	70, 204, 243, 257, 356, 495
SfaNI	GCATC	1 cut(s)	322
SgrAI	CRCCGGYG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	490
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SseBI	AGGCCT	1 cut(s)	131
SsiI	CCGC	5 cut(s)	5, 136, 246, 249, 399
StuI	AGGCCT	1 cut(s)	131
StyI	CCWWGG	2 cut(s)	117, 186
TaiI	ACGT	1 cut(s)	356
TaqI	TCGA	1 cut(s)	427
TauI	GCSGC	4 cut(s)	8, 248, 251, 402
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	2 cut(s)	104, 173
TseI	GCWGC	3 cut(s)	65, 68, 302
TspDTI	ATGAA	2 cut(s)	251, 458
TspGWI	ACGGA	2 cut(s)	190, 330
TspRI	CASTG	2 cut(s)	104, 173
VpaK11BI	GGWCC	1 cut(s)	490
XceI	RCATGY	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.