Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001477

Physical Location & Seq

Genomic Coordinates Forward (+)

14239257 .. 14239703

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00229700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCGGCTCATGGATCTCTGCTCTTTCTCCTTCCCCTACTCTCTCTCCTCCTCCGTAATGCGGCCGCGATTACGCTCTCCCCGCGCCTCGTACACCGCTTCTCCGACGAGGCCAAGGCTCTCAAGGCCTCCCGCAGCACGGCGACGCCAAATGGCTTGGTCGGTGGCCGCGAGAAACTCTATGGACTACTATCACCTCCTCGCCGGCACCGACTTCCGGCGCCGGAAGATGAAGCTCGACACCTCTCGTCATCGGTTCCGGTTCCTCTTCCCCTCGAAGGCGGCAACACGGCGTCGTTTGGCAATGACTTCGGCTGGTTGCATTATACATGGATTGATATAGGGACACCGAATGTTTCGTTTACGGTGGCATTGGATACGAAAGTGATCTGCTTTGGGTTCCATGTGATTGCCTACAATGCGCTCCCTATCGGCTACTCACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

148

Amino Acids

16.0

Weight (kDa)

9.3

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10080
fragaria_vesca	FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650
malus_domestica	MD01G1024100.v1.1 MD15G1362800.v1.1
prunus_persica	Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.6G179100_v2.0.a1
pyrus_communis	pycom01g05180 pycom15g32510
rosa_chinensis	RchiOBHm_Chr1g0350111 RchiOBHm_Chr2g0115521 RchiOBHm_Chr2g0129991
rosa_laevigata	RLG00000005996 RLG00000006248 RLG00000015274 RLG00000018190 RLG00000030771
rosa_multiflora	Rmu_sc0005625.1_g000012 Rmu_sc0007210.1_g000001 Rmu_sc0009900.1_g000009 Rmu_sc0021224.1_g000001 Rmu_sc0039462.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064010 Rroxscaffold_1G00064020 Rroxscaffold_2G00123530 Rroxscaffold_2G00128130 Rroxscaffold_2G00129010 Rroxscaffold_3G00229700 Rroxscaffold_5G00344250 Rroxscaffold_7G00197080 Rroxscaffold_7G00197100 Rroxscaffold_7G00217690
rosa_rugosa	Rorug02G0197300 Rorug02G0197300 Rorug02G0197300
rosa_samantha	Rh1CG101200 Rh1CG101300 Rh2AG254900 Rh2AG342200 Rh2BG265700 Rh2CG260100 Rh2DG263000 Rh2DG368300 Rh2DG576100
rosa_wichuraiana	Rw2G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	207, 220
AccII	CGCG	3 cut(s)	68, 85, 171
AciI	CCGC	8 cut(s)	5, 62, 66, 83, 97, 133, 169, 282
AclWI	GGATC	1 cut(s)	22
AcoI	YGGCCR	2 cut(s)	63, 166
AcyI	GRCGYC	3 cut(s)	146, 221, 293
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	4 cut(s)	61, 139, 217, 278
AluBI	AGCT	1 cut(s)	236
AluI	AGCT	1 cut(s)	236
AlwI	GGATC	1 cut(s)	22
AoxI	GGCC	4 cut(s)	63, 111, 126, 166
ApeKI	GCWGC	1 cut(s)	135
AspLEI	GCGC	3 cut(s)	87, 223, 424
AsuHPI	GGTGA	1 cut(s)	186
BaeI	ACNNNNGTAYC	2 cut(s)	369, 402
BanI	GGYRCC	2 cut(s)	207, 220
BbvI	GCAGC	1 cut(s)	147
BceAI	ACGGC	2 cut(s)	156, 306
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BciVI	GTATCC	1 cut(s)	370
BfmI	CTRYAG	1 cut(s)	443
BfoI	RGCGCY	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	370
BisI	GCNGC	6 cut(s)	6, 63, 66, 136, 169, 283
BlsI	GCNGC	6 cut(s)	7, 64, 67, 137, 170, 284
BmiI	GGNNCC	5 cut(s)	209, 222, 258, 264, 401
BpuEI	CTTGAG	1 cut(s)	107
BsaHI	GRCGYC	3 cut(s)	146, 221, 293
BsaJI	CCNNGG	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	259
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 60, 86, 116
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 139, 217, 278
Bse118I	RCCGGY	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	310
BseDI	CCNNGG	1 cut(s)	114
BseLI	CCNNNNNNNGG	4 cut(s)	61, 139, 217, 278
BseMI	GCAATG	1 cut(s)	310
BseRI	GAGGAG	3 cut(s)	38, 41, 189
BseX3I	CGGCCG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	147
Bsh1236I	CGCG	3 cut(s)	68, 85, 171
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	4 cut(s)	65, 113, 128, 168
BshNI	GGYRCC	2 cut(s)	207, 220
BsiEI	CGRYCG	1 cut(s)	66
BsiSI	CCGG	4 cut(s)	205, 218, 224, 260
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	4 cut(s)	61, 139, 217, 278
BsmFI	GGGAC	1 cut(s)	358
BsnI	GGCC	4 cut(s)	65, 113, 128, 168
Bsp143I	GATC	2 cut(s)	14, 387
BspACI	CCGC	8 cut(s)	5, 62, 66, 83, 97, 133, 169, 282
BspANI	GGCC	4 cut(s)	65, 113, 128, 168
BspFNI	CGCG	3 cut(s)	68, 85, 171
BspLI	GGNNCC	5 cut(s)	209, 222, 258, 264, 401
BspPI	GGATC	1 cut(s)	22
BspT107I	GGYRCC	2 cut(s)	207, 220
BsrDI	GCAATG	1 cut(s)	310
BsrFI	RCCGGY	1 cut(s)	204
BssAI	RCCGGY	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	2 cut(s)	14, 387
BssNI	GRCGYC	3 cut(s)	146, 221, 293
BssT1I	CCWWGG	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	1 cut(s)	273
BstACI	GRCGYC	3 cut(s)	146, 221, 293
BstC8I	GCNNGC	1 cut(s)	206
BstFNI	CGCG	3 cut(s)	68, 85, 171
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	3 cut(s)	87, 223, 424
BstKTI	GATC	2 cut(s)	17, 390
BstMBI	GATC	2 cut(s)	14, 387
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 125, 419
BstSFI	CTRYAG	1 cut(s)	443
BstUI	CGCG	3 cut(s)	68, 85, 171
BstV1I	GCAGC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
BstZI	CGGCCG	1 cut(s)	63
BsuI	GTATCC	1 cut(s)	370
BsuRI	GGCC	4 cut(s)	65, 113, 128, 168
Cac8I	GCNNGC	1 cut(s)	206
CciNI	GCGGCCGC	1 cut(s)	63
CfoI	GCGC	3 cut(s)	87, 223, 424
Cfr10I	RCCGGY	1 cut(s)	204
CseI	GACGC	2 cut(s)	154, 282
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	3 cut(s)	11, 330, 404
CviQI	GTAC	1 cut(s)	92
DinI	GGCGCC	1 cut(s)	222
DpnI	GATC	2 cut(s)	16, 389
DpnII	GATC	2 cut(s)	14, 387
EaeI	YGGCCR	2 cut(s)	63, 166
EagI	CGGCCG	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EclXI	CGGCCG	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	114
Eco147I	AGGCCT	1 cut(s)	128
Eco52I	CGGCCG	1 cut(s)	63
EcoT14I	CCWWGG	1 cut(s)	114
EgeI	GGCGCC	1 cut(s)	222
EheI	GGCGCC	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	3 cut(s)	14, 333, 407
FaiI	YATR	7 cut(s)	12, 183, 327, 331, 341, 405, 445
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	3 cut(s)	10, 329, 403
FauI	CCCGC	2 cut(s)	90, 140
Fnu4HI	GCNGC	6 cut(s)	6, 63, 66, 136, 169, 283
Fsp4HI	GCNGC	6 cut(s)	6, 63, 66, 136, 169, 283
GlaI	GCGC	3 cut(s)	86, 222, 423
GluI	GCNGC	6 cut(s)	6, 63, 66, 136, 169, 283
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	4 cut(s)	65, 113, 128, 168
HapII	CCGG	4 cut(s)	205, 218, 224, 260
HgaI	GACGC	2 cut(s)	154, 282
HhaI	GCGC	3 cut(s)	87, 223, 424
Hin1I	GRCGYC	3 cut(s)	146, 221, 293
Hin1II	CATG	3 cut(s)	14, 333, 407
Hin6I	GCGC	3 cut(s)	85, 221, 422
HinP1I	GCGC	3 cut(s)	85, 221, 422
HpaII	CCGG	4 cut(s)	205, 218, 224, 260
HphI	GGTGA	1 cut(s)	186
Hpy166II	GTNNAC	2 cut(s)	94, 363
Hpy188I	TCNGA	1 cut(s)	106
Hpy8I	GTNNAC	2 cut(s)	94, 363
Hpy99I	CGWCG	3 cut(s)	110, 148, 298
HpyAV	CCTTC	2 cut(s)	41, 272
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	1 cut(s)	322
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 125, 419
Hsp92I	GRCGYC	3 cut(s)	146, 221, 293
Hsp92II	CATG	3 cut(s)	14, 333, 407
HspAI	GCGC	3 cut(s)	85, 221, 422
KasI	GGCGCC	1 cut(s)	220
KroI	GCCGGC	1 cut(s)	204
KroNI	GCCGGC	1 cut(s)	206
Kzo9I	GATC	2 cut(s)	14, 387
LmnI	GCTCC	1 cut(s)	429
LpnPI	CCDG	5 cut(s)	218, 231, 237, 273, 301
Lsp1109I	GCAGC	1 cut(s)	147
MalI	GATC	2 cut(s)	16, 389
MboI	GATC	2 cut(s)	14, 387
MboII	GAAGA	2 cut(s)	239, 260
MflI	RGATCY	1 cut(s)	14
Mly113I	GGCGCC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	129
MroNI	GCCGGC	1 cut(s)	204
MspI	CCGG	4 cut(s)	205, 218, 224, 260
MvnI	CGCG	3 cut(s)	68, 85, 171
MwoI	GCNNNNNNNGC	3 cut(s)	82, 125, 419
NaeI	GCCGGC	1 cut(s)	206
NarI	GGCGCC	1 cut(s)	221
NdeII	GATC	2 cut(s)	14, 387
NgoMIV	GCCGGC	1 cut(s)	204
NlaIII	CATG	3 cut(s)	14, 333, 407
NlaIV	GGNNCC	5 cut(s)	209, 222, 258, 264, 401
NotI	GCGGCCGC	1 cut(s)	63
PceI	AGGCCT	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 208
PdiI	GCCGGC	1 cut(s)	206
PkrI	GCNGC	6 cut(s)	7, 64, 67, 137, 170, 284
PluTI	GGCGCC	1 cut(s)	224
PspN4I	GGNNCC	5 cut(s)	209, 222, 258, 264, 401
PsuI	RGATCY	1 cut(s)	14
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SatI	GCNGC	6 cut(s)	6, 63, 66, 136, 169, 283
Sau3AI	GATC	2 cut(s)	14, 387
SetI	ASST	3 cut(s)	199, 238, 246
SfcI	CTRYAG	1 cut(s)	443
SfoI	GGCGCC	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	8 cut(s)	5, 62, 66, 83, 97, 133, 169, 282
SspDI	GGCGCC	1 cut(s)	220
StuI	AGGCCT	1 cut(s)	128
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	367
TaqI	TCGA	2 cut(s)	238, 276
TauI	GCSGC	5 cut(s)	8, 65, 68, 171, 285
TseI	GCWGC	1 cut(s)	135
TspDTI	ATGAA	1 cut(s)	246
TspGWI	ACGGA	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.