Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039462.1

Orthogroup ID

OG0001477

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 542

Gene Structure 542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039462.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 265 bp

atctcttttttcctttgttaccaatacacacattgcaggtcaagatcttggtgatgctaagagtatgcccctaacaccttctccaaagggcacaccaccaattccattgccaacaactgagcagcagagcactcctggtgggtttgctcctgctgttgctggaagagctccgccgaaagcatcagctgcatctagtcggccaaggttttgtttgttgagatggctggcgctactagtattattttgtatcgtcttcatcttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

87

Amino Acids

9.18

Weight (kDa)

9.84

Isoelectric Point (pI)

67.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10080
fragaria_vesca	FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650
malus_domestica	MD01G1024100.v1.1 MD15G1362800.v1.1
prunus_persica	Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.6G179100_v2.0.a1
pyrus_communis	pycom01g05180 pycom15g32510
rosa_chinensis	RchiOBHm_Chr1g0350111 RchiOBHm_Chr2g0115521 RchiOBHm_Chr2g0129991
rosa_laevigata	RLG00000005996 RLG00000006248 RLG00000015274 RLG00000018190 RLG00000030771
rosa_multiflora	Rmu_sc0005625.1_g000012 Rmu_sc0007210.1_g000001 Rmu_sc0009900.1_g000009 Rmu_sc0021224.1_g000001 Rmu_sc0039462.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064010 Rroxscaffold_1G00064020 Rroxscaffold_2G00123530 Rroxscaffold_2G00128130 Rroxscaffold_2G00129010 Rroxscaffold_3G00229700 Rroxscaffold_5G00344250 Rroxscaffold_7G00197080 Rroxscaffold_7G00197100 Rroxscaffold_7G00217690
rosa_rugosa	Rorug02G0197300 Rorug02G0197300 Rorug02G0197300
rosa_samantha	Rh1CG101200 Rh1CG101300 Rh2AG254900 Rh2AG342200 Rh2BG265700 Rh2CG260100 Rh2DG263000 Rh2DG368300 Rh2DG576100
rosa_wichuraiana	Rw2G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	27
AciI	CCGC	1 cut(s)	171
AcoI	YGGCCR	1 cut(s)	198
AhlI	ACTAGT	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	2 cut(s)	168, 186
AluI	AGCT	2 cut(s)	168, 186
Alw21I	GWGCWC	2 cut(s)	132, 170
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	122, 186
AspLEI	GCGC	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	63
BaeGI	GKGCMC	1 cut(s)	93
BanII	GRGCYC	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	2 cut(s)	132, 170
BbvI	GCAGC	2 cut(s)	134, 173
BccI	CCATC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	136
BcuI	ACTAGT	1 cut(s)	233
BfaI	CTAG	3 cut(s)	193, 234, 263
BfoI	RGCGCY	1 cut(s)	231
BfuAI	ACCTGC	1 cut(s)	27
BglII	AGATCT	1 cut(s)	44
BisI	GCNGC	2 cut(s)	123, 187
BlsI	GCNGC	2 cut(s)	124, 188
Bme1390I	CCNGG	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	3 cut(s)	44, 189, 198
BpiI	GAAGAC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	201
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bse3DI	GCAATG	2 cut(s)	31, 105
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	201
BseMI	GCAATG	2 cut(s)	31, 105
BseMII	CTCAG	1 cut(s)	109
BseSI	GKGCMC	1 cut(s)	93
BseXI	GCAGC	2 cut(s)	134, 173
BshFI	GGCC	1 cut(s)	200
BsiHKAI	GWGCWC	2 cut(s)	132, 170
BsnI	GGCC	1 cut(s)	200
Bsp1286I	GDGCHC	3 cut(s)	93, 132, 170
Bsp143I	GATC	1 cut(s)	44
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	110
BspMI	ACCTGC	1 cut(s)	27
BspQI	GCTCTTC	1 cut(s)	158
BsrDI	GCAATG	2 cut(s)	31, 105
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	158
BstAPI	GCANNNNNTGC	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	2 cut(s)	58, 118
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	1 cut(s)	47
BstMBI	GATC	1 cut(s)	44
BstMWI	GCNNNNNNNGC	2 cut(s)	165, 186
BstNI	CCWGG	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	134
BstSLI	GKGCMC	1 cut(s)	93
BstV1I	GCAGC	2 cut(s)	134, 173
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	200
BveI	ACCTGC	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	226
CfoI	GCGC	1 cut(s)	230
CviJI	RGCY	4 cut(s)	168, 186, 200, 224
CviKI_1	RGCY	4 cut(s)	168, 186, 200, 224
DdeI	CTNAG	2 cut(s)	58, 118
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
EciI	GGCGGA	1 cut(s)	160
Ecl136II	GAGCTC	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	170
Eco53kI	GAGCTC	1 cut(s)	168
EcoICRI	GAGCTC	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	201
FaiI	YATR	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	123, 187
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	2 cut(s)	123, 187
FspBI	CTAG	3 cut(s)	193, 234, 263
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	2 cut(s)	123, 187
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	200
HhaI	GCGC	1 cut(s)	230
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HphI	GGTGA	1 cut(s)	63
Hpy188III	TCNNGA	1 cut(s)	42
HpyAV	CCTTC	1 cut(s)	88
HpyCH4V	TGCA	2 cut(s)	36, 189
HpyF10VI	GCNNNNNNNGC	2 cut(s)	165, 186
HpyF3I	CTNAG	2 cut(s)	58, 118
HspAI	GCGC	1 cut(s)	228
Kzo9I	GATC	1 cut(s)	44
LguI	GCTCTTC	1 cut(s)	158
LmnI	GCTCC	2 cut(s)	152, 173
LpnPI	CCDG	6 cut(s)	22, 121, 145, 148, 163, 210
Lsp1109I	GCAGC	2 cut(s)	134, 173
LweI	GCATC	3 cut(s)	44, 189, 198
MaeI	CTAG	3 cut(s)	193, 234, 263
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	1 cut(s)	46
MboI	GATC	1 cut(s)	44
MboII	GAAGA	3 cut(s)	175, 245, 251
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	3 cut(s)	93, 132, 170
MluCI	AATT	1 cut(s)	100
MspA1I	CMGCKG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	2 cut(s)	165, 186
NdeII	GATC	1 cut(s)	44
PciSI	GCTCTTC	1 cut(s)	158
PkrI	GCNGC	2 cut(s)	124, 188
Psp124BI	GAGCTC	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	186
SacI	GAGCTC	1 cut(s)	170
SapI	GCTCTTC	1 cut(s)	158
SatI	GCNGC	2 cut(s)	123, 187
Sau3AI	GATC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	3 cut(s)	93, 132, 170
SetI	ASST	5 cut(s)	41, 80, 170, 188, 207
SfaNI	GCATC	3 cut(s)	44, 189, 198
SpeI	ACTAGT	1 cut(s)	233
Sse9I	AATT	1 cut(s)	100
SsiI	CCGC	1 cut(s)	171
SspMI	CTAG	3 cut(s)	193, 234, 263
SstI	GAGCTC	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	201
TasI	AATT	1 cut(s)	100
TseI	GCWGC	2 cut(s)	122, 186
TspDTI	ATGAA	1 cut(s)	245
XspI	CTAG	3 cut(s)	193, 234, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.