Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001477

Physical Location & Seq

Genomic Coordinates Forward (+)

64786608 .. 64792088

Gene Structure 5481 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00129010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

ATGGCGGCTCATCGATCTCTGCTCTTTCTCCTTCCTCTACTCTCTCTCCTCCTCCGTAATGCGGCCGCGATTACGCTCTCCTCCCGCCTCATACACCGCTTCTCCGACGAGGCCAAGGCTCTCAAGGCCTCCCGCAGCACCGGCGACGCCAAATGGCTCGGTCGGTGGCCGCGGAGAAACTCCATGGACTACTATCACCTCCTCGCCAGCACCGACTTCCAGCGCCAGAAGATGAACCTCGGCACCTCTCGTCATCAGTTCCAGTTCCTCTTCCCCTCCGAAGGCAGCAACACGGCGTCGTTTGGCAATGACTTCGGCTGGTTGCATTATACGTGGATTGATATAGGGACGCCGAATGTTTCGTTTCTGGTGGCATTGGATACTGGAAGTGATCTGCTTTGGGTTCCATGTGATTGCCTACAATGCGCTCCCCTATCAGCTACTCACTATAGTACTCTGGATAGAGATTTGAACGAGTATAGTCCGTCTGGCTCAAACACCAGCAAGCATGTGTCTTGCAGCCATGAGTTATGTACAGCTGGTCCAAACTGCAAGGGCCCCAAGCAGCCCTGCCCTTACACTATTGAATACTTCTCAGAAAATACATCGAGTTCTGGATTGCTTGTGGAGGATATATTACATCTTGTAGCGGGGGGTAACGGTGTATCAAACAATTCTATTCAGGCCCCTGTGATCATAGGATGTGGTATGAAGCAAAGTGGTGGGTACCTGGATGGCATTGCTCCTGATGGTCTTATGGGTTTAGGACTAGGAGAGGTTTCAGTTCCTAGTTTCCTTGCTAAAGCAGGATTGATCACAAACTCTTTCTCAATGTGCGTGAATGAGGAAGTTAATATTACACTTCTGAGTTCTGAAGCTAAGAATCTTGTGAAATCTCCACTGTTCAATAGTTTGTTGTGTGAAACCTACATTGTTGGTGTGGAAGCATGTTGTATTGGAAATTCTTGTCTTAAGCAGACAAGCTTCAAGGCATTGGTTGATACTGGGACATCATTTACATTCCTTCCAGAAGAAATATATGATAAAATTGCAGTGGAGTTTGATAAGCGAGTGAATGCGACAATCACGAGTTATGAAGGATCTCCATGGAAGTACTGCTATAATACCAGTTCTCAAGATTTGCTAAAAGTGCCTTCTGTGACGCTTATGTTCCTGGCAAACAACAGTTTTGTGGTCCATGACCCCGTTTTCCCGATATATGATAATCAGGGAGTTGTTGGAATTTGTTTAGCCATACAGCCAGCGGATGGTGATATTGGAACGATTGGACAGAACTTCATGACCGGATATCAGACAGTATTTGATAGGGAGAATATGAAGCTAGGCTGGTCTCGCTCAAAATGTCAAGATCTTGGTGATGCTAAGAGTATGCCCCTAACACCTTCTCCAAAGGGCACACCACCAATTCCATTGCCAACAACTGAGCAGCAGAGCACTCCTGGTGGGTTTGCTCCTGCTGTTGCTGGAAGAGCTCCGCCAAAAGCATCAGCTGCATCTAGTCGGCCAAGGGACTCGAGCGAAAGTAGAACTCCATGTAAAGATGATTTGGATAGTGGTGTACTTTCAATTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

531

Amino Acids

57.39

Weight (kDa)

5.72

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	110 - 281	1.2e-33	Xylanase inhibitor N-terminal
Asp	PF00026	110 - 450	3.4e-18	Eukaryotic aspartyl protease
TAXi_C	PF14541	325 - 451	1.9e-13	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10080
fragaria_vesca	FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650
malus_domestica	MD01G1024100.v1.1 MD15G1362800.v1.1
prunus_persica	Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.6G179100_v2.0.a1
pyrus_communis	pycom01g05180 pycom15g32510
rosa_chinensis	RchiOBHm_Chr1g0350111 RchiOBHm_Chr2g0115521 RchiOBHm_Chr2g0129991
rosa_laevigata	RLG00000005996 RLG00000006248 RLG00000015274 RLG00000018190 RLG00000030771
rosa_multiflora	Rmu_sc0005625.1_g000012 Rmu_sc0007210.1_g000001 Rmu_sc0009900.1_g000009 Rmu_sc0021224.1_g000001 Rmu_sc0039462.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064010 Rroxscaffold_1G00064020 Rroxscaffold_2G00123530 Rroxscaffold_2G00128130 Rroxscaffold_2G00129010 Rroxscaffold_3G00229700 Rroxscaffold_5G00344250 Rroxscaffold_7G00197080 Rroxscaffold_7G00197100 Rroxscaffold_7G00217690
rosa_rugosa	Rorug02G0197300 Rorug02G0197300 Rorug02G0197300
rosa_samantha	Rh1CG101200 Rh1CG101300 Rh2AG254900 Rh2AG342200 Rh2BG265700 Rh2CG260100 Rh2DG263000 Rh2DG368300 Rh2DG576100
rosa_wichuraiana	Rw2G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	726
AccB1I	GGYRCC	2 cut(s)	242, 726
AccB7I	CCANNNNNTGG	1 cut(s)	1268
AccII	CGCG	2 cut(s)	68, 172
AclWI	GGATC	1 cut(s)	1108
AcoI	YGGCCR	3 cut(s)	63, 167, 1523
AcsI	RAATTY	2 cut(s)	961, 1242
AcuI	CTGAAG	1 cut(s)	894
AcyI	GRCGYC	3 cut(s)	147, 296, 350
AfaI	GTAC	5 cut(s)	454, 535, 728, 1115, 1581
AfiI	CCNNNNNNNGG	3 cut(s)	61, 281, 1268
AflII	CTTAAG	1 cut(s)	971
AgsI	TTSAA	5 cut(s)	472, 587, 907, 988, 1587
AjnI	CCWGG	3 cut(s)	729, 1173, 1459
AluBI	AGCT	7 cut(s)	440, 539, 878, 984, 1342, 1493, 1511
AluI	AGCT	7 cut(s)	440, 539, 878, 984, 1342, 1493, 1511
Alw21I	GWGCWC	2 cut(s)	1457, 1495
Alw26I	GTCTC	1 cut(s)	1356
AlwI	GGATC	1 cut(s)	1108
Ama87I	CYCGRG	1 cut(s)	1534
AoxI	GGCC	7 cut(s)	63, 111, 126, 167, 556, 684, 1523
ApaI	GGGCCC	1 cut(s)	560
ApeKI	GCWGC	6 cut(s)	135, 285, 519, 565, 1447, 1511
ApoI	RAATTY	2 cut(s)	961, 1242
AseI	ATTAAT	1 cut(s)	1590
Asp718I	GGTACC	1 cut(s)	726
AspLEI	GCGC	2 cut(s)	225, 428
AspS9I	GGNCC	5 cut(s)	542, 556, 557, 685, 1195
AsuHPI	GGTGA	3 cut(s)	188, 1283, 1388
AvaI	CYCGRG	1 cut(s)	1534
AvaII	GGWCC	2 cut(s)	542, 1195
BaeGI	GKGCMC	2 cut(s)	560, 1418
BanI	GGYRCC	2 cut(s)	242, 726
BanII	GRGCYC	2 cut(s)	560, 1495
BauI	CACGAG	1 cut(s)	1087
Bbv12I	GWGCWC	2 cut(s)	1457, 1495
BbvI	GCAGC	6 cut(s)	147, 297, 531, 577, 1459, 1498
BccI	CCATC	3 cut(s)	728, 743, 1262
BceAI	ACGGC	1 cut(s)	309
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciT130I	CCWGG	3 cut(s)	731, 1175, 1461
BciVI	GTATCC	1 cut(s)	373
BclI	TGATCA	2 cut(s)	693, 813
BcoDI	GTCTC	1 cut(s)	1356
BfaI	CTAG	4 cut(s)	770, 789, 1343, 1518
BfmI	CTRYAG	1 cut(s)	448
BfoI	RGCGCY	1 cut(s)	226
BfrI	CTTAAG	1 cut(s)	971
BfuI	GTATCC	1 cut(s)	373
BglII	AGATCT	1 cut(s)	1369
BmcAI	AGTACT	2 cut(s)	454, 1115
Bme1390I	CCNGG	3 cut(s)	731, 1175, 1461
Bme18I	GGWCC	2 cut(s)	542, 1195
BmeT110I	CYCGRG	1 cut(s)	1534
BmgT120I	GGNCC	5 cut(s)	542, 556, 557, 685, 1195
BmiI	GGNNCC	6 cut(s)	244, 405, 558, 559, 687, 728
BmrFI	CCNGG	3 cut(s)	731, 1175, 1461
BmrI	ACTGGG	1 cut(s)	1014
BmsI	GCATC	3 cut(s)	1369, 1514, 1523
BmuI	ACTGGG	1 cut(s)	1014
BpuEI	CTTGAG	2 cut(s)	107, 1119
Bsa29I	ATCGAT	1 cut(s)	13
BsaAI	YACGTR	1 cut(s)	333
BsaHI	GRCGYC	3 cut(s)	147, 296, 350
BsaI	GGTCTC	1 cut(s)	1356
BsaJI	CCNNGG	6 cut(s)	114, 170, 183, 238, 1106, 1526
BsaWI	WCCGGW	1 cut(s)	1304
BsaXI	ACNNNNNCTCC	6 cut(s)	30, 60, 86, 116, 1390, 1420
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 281, 1268
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	4 cut(s)	262, 388, 1009, 1128
Bse3DI	GCAATG	3 cut(s)	313, 738, 1430
BseBI	CCWGG	3 cut(s)	731, 1175, 1461
BseCI	ATCGAT	1 cut(s)	13
BseDI	CCNNGG	6 cut(s)	114, 170, 183, 238, 1106, 1526
BseGI	GGATG	3 cut(s)	707, 739, 1273
BseLI	CCNNNNNNNGG	3 cut(s)	61, 281, 1268
BseMI	GCAATG	3 cut(s)	313, 738, 1430
BseMII	CTCAG	3 cut(s)	609, 857, 1434
BseNI	ACTGG	4 cut(s)	262, 388, 1009, 1128
BseRI	GAGGAG	4 cut(s)	38, 41, 70, 191
BseSI	GKGCMC	2 cut(s)	560, 1418
BseX3I	CGGCCG	1 cut(s)	63
BseXI	GCAGC	6 cut(s)	147, 297, 531, 577, 1459, 1498
Bsh1236I	CGCG	2 cut(s)	68, 172
Bsh1285I	CGRYCG	2 cut(s)	66, 163
BshFI	GGCC	7 cut(s)	65, 113, 128, 169, 558, 686, 1525
BshNI	GGYRCC	2 cut(s)	242, 726
BshVI	ATCGAT	1 cut(s)	13
BsiEI	CGRYCG	2 cut(s)	66, 163
BsiHKAI	GWGCWC	2 cut(s)	1457, 1495
BsiHKCI	CYCGRG	1 cut(s)	1534
BsiSI	CCGG	2 cut(s)	141, 1305
BslFI	GGGAC	3 cut(s)	361, 1021, 1544
BslI	CCNNNNNNNGG	3 cut(s)	61, 281, 1268
BsmAI	GTCTC	1 cut(s)	1356
BsmFI	GGGAC	3 cut(s)	361, 1021, 1544
BsmI	GAATGC	1 cut(s)	1081
BsnI	GGCC	7 cut(s)	65, 113, 128, 169, 558, 686, 1525
Bso31I	GGTCTC	1 cut(s)	1356
BsoBI	CYCGRG	1 cut(s)	1534
Bsp120I	GGGCCC	1 cut(s)	556
Bsp1286I	GDGCHC	4 cut(s)	560, 1418, 1457, 1495
Bsp1407I	TGTACA	1 cut(s)	533
Bsp143I	GATC	6 cut(s)	14, 391, 693, 813, 1100, 1369
Bsp19I	CCATGG	2 cut(s)	183, 1106
BspANI	GGCC	7 cut(s)	65, 113, 128, 169, 558, 686, 1525
BspCNI	CTCAG	3 cut(s)	608, 858, 1435
BspDI	ATCGAT	1 cut(s)	13
BspFNI	CGCG	2 cut(s)	68, 172
BspHI	TCATGA	1 cut(s)	1299
BspLI	GGNNCC	6 cut(s)	244, 405, 558, 559, 687, 728
BspPI	GGATC	1 cut(s)	1108
BspQI	GCTCTTC	1 cut(s)	1483
BspT107I	GGYRCC	2 cut(s)	242, 726
BspTI	CTTAAG	1 cut(s)	971
BspTNI	GGTCTC	1 cut(s)	1356
BsrDI	GCAATG	3 cut(s)	313, 738, 1430
BsrFI	RCCGGY	1 cut(s)	140
BsrGI	TGTACA	1 cut(s)	533
BsrI	ACTGG	4 cut(s)	262, 388, 1009, 1128
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	6 cut(s)	114, 170, 183, 238, 1106, 1526
BssMI	GATC	6 cut(s)	14, 391, 693, 813, 1100, 1369
BssNI	GRCGYC	3 cut(s)	147, 296, 350
BssSI	CACGAG	1 cut(s)	1087
BssT1I	CCWWGG	4 cut(s)	114, 183, 1106, 1526
Bst2BI	CACGAG	1 cut(s)	1087
Bst2UI	CCWGG	3 cut(s)	731, 1175, 1461
Bst4CI	ACNGT	4 cut(s)	662, 903, 1187, 1318
Bst6I	CTCTTC	2 cut(s)	275, 1483
BstACI	GRCGYC	3 cut(s)	147, 296, 350
BstAFI	CTTAAG	1 cut(s)	971
BstAPI	GCANNNNNTGC	1 cut(s)	1511
BstAUI	TGTACA	1 cut(s)	533
BstBAI	YACGTR	1 cut(s)	333
BstC8I	GCNNGC	3 cut(s)	208, 506, 1263
BstDEI	CTNAG	5 cut(s)	595, 866, 879, 1383, 1443
BstDSI	CCRYGG	3 cut(s)	170, 183, 1106
BstF5I	GGATG	3 cut(s)	707, 739, 1273
BstFNI	CGCG	2 cut(s)	68, 172
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	2 cut(s)	225, 428
BstKTI	GATC	6 cut(s)	17, 394, 696, 816, 1103, 1372
BstMAI	GTCTC	1 cut(s)	1356
BstMBI	GATC	6 cut(s)	14, 391, 693, 813, 1100, 1369
BstMCI	CGRYCG	2 cut(s)	66, 163
BstMWI	GCNNNNNNNGC	7 cut(s)	125, 141, 423, 1150, 1353, 1490, 1511
BstNI	CCWGG	3 cut(s)	731, 1175, 1461
BstNSI	RCATGY	2 cut(s)	512, 951
BstSCI	CCNGG	3 cut(s)	729, 1173, 1459
BstSFI	CTRYAG	1 cut(s)	448
BstSLI	GKGCMC	2 cut(s)	560, 1418
BstUI	CGCG	2 cut(s)	68, 172
BstV1I	GCAGC	6 cut(s)	147, 297, 531, 577, 1459, 1498
BstX2I	RGATCY	2 cut(s)	1100, 1369
BstYI	RGATCY	2 cut(s)	1100, 1369
BstZI	CGGCCG	1 cut(s)	63
Bsu15I	ATCGAT	1 cut(s)	13
BsuI	GTATCC	1 cut(s)	373
BsuRI	GGCC	7 cut(s)	65, 113, 128, 169, 558, 686, 1525
BsuTUI	ATCGAT	1 cut(s)	13
BtgI	CCRYGG	3 cut(s)	170, 183, 1106
BtsCI	GGATG	3 cut(s)	707, 739, 1273
BtsI	GCAGTG	1 cut(s)	1059
BtsIMutI	CAGTG	2 cut(s)	899, 1059
Cac8I	GCNNGC	3 cut(s)	208, 506, 1263
CciI	TCATGA	1 cut(s)	1299
CciNI	GCGGCCGC	1 cut(s)	63
CfoI	GCGC	2 cut(s)	225, 428
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	5 cut(s)	542, 556, 557, 685, 1195
Cfr42I	CCGCGG	1 cut(s)	173
ClaI	ATCGAT	1 cut(s)	13
CseI	GACGC	4 cut(s)	155, 285, 358, 1171
Csp6I	GTAC	5 cut(s)	453, 534, 727, 1114, 1580
CviAII	CATG	9 cut(s)	184, 408, 509, 524, 948, 1107, 1199, 1300, 1554
CviQI	GTAC	5 cut(s)	453, 534, 727, 1114, 1580
DdeI	CTNAG	5 cut(s)	595, 866, 879, 1383, 1443
DpnI	GATC	6 cut(s)	16, 393, 695, 815, 1102, 1371
DpnII	GATC	6 cut(s)	14, 391, 693, 813, 1100, 1369
EaeI	YGGCCR	3 cut(s)	63, 167, 1523
EagI	CGGCCG	1 cut(s)	63
Eam1104I	CTCTTC	2 cut(s)	275, 1483
EarI	CTCTTC	2 cut(s)	275, 1483
EciI	GGCGGA	1 cut(s)	1485
Ecl136II	GAGCTC	1 cut(s)	1493
EclXI	CGGCCG	1 cut(s)	63
Eco130I	CCWWGG	4 cut(s)	114, 183, 1106, 1526
Eco147I	AGGCCT	1 cut(s)	128
Eco24I	GRGCYC	2 cut(s)	560, 1495
Eco31I	GGTCTC	1 cut(s)	1356
Eco32I	GATATC	1 cut(s)	1310
Eco47I	GGWCC	2 cut(s)	542, 1195
Eco52I	CGGCCG	1 cut(s)	63
Eco53kI	GAGCTC	1 cut(s)	1493
Eco57I	CTGAAG	1 cut(s)	894
Eco88I	CYCGRG	1 cut(s)	1534
EcoICRI	GAGCTC	1 cut(s)	1493
EcoO109I	RGGNCCY	3 cut(s)	556, 557, 685
EcoRII	CCWGG	3 cut(s)	729, 1173, 1459
EcoRV	GATATC	1 cut(s)	1310
EcoT14I	CCWWGG	4 cut(s)	114, 183, 1106, 1526
EcoT38I	GRGCYC	2 cut(s)	560, 1495
ErhI	CCWWGG	4 cut(s)	114, 183, 1106, 1526
FaeI	CATG	9 cut(s)	187, 411, 512, 527, 951, 1110, 1202, 1303, 1557
FaqI	GGGAC	3 cut(s)	361, 1021, 1544
FatI	CATG	9 cut(s)	183, 407, 508, 523, 947, 1106, 1198, 1299, 1553
FauI	CCCGC	3 cut(s)	92, 140, 643
FbaI	TGATCA	2 cut(s)	693, 813
FokI	GGATG	3 cut(s)	714, 746, 1280
FriOI	GRGCYC	2 cut(s)	560, 1495
FspBI	CTAG	4 cut(s)	770, 789, 1343, 1518
GlaI	GCGC	2 cut(s)	224, 427
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	7 cut(s)	65, 113, 128, 169, 558, 686, 1525
HapII	CCGG	2 cut(s)	141, 1305
HgaI	GACGC	4 cut(s)	155, 285, 358, 1171
HhaI	GCGC	2 cut(s)	225, 428
Hin1I	GRCGYC	3 cut(s)	147, 296, 350
Hin1II	CATG	9 cut(s)	187, 411, 512, 527, 951, 1110, 1202, 1303, 1557
Hin6I	GCGC	2 cut(s)	223, 426
HinP1I	GCGC	2 cut(s)	223, 426
HindIII	AAGCTT	1 cut(s)	982
HinfI	GANTC	2 cut(s)	883, 1532
HpaII	CCGG	2 cut(s)	141, 1305
HphI	GGTGA	3 cut(s)	188, 1283, 1388
Hpy166II	GTNNAC	1 cut(s)	1580
Hpy188I	TCNGA	6 cut(s)	106, 280, 598, 867, 874, 1314
Hpy188III	TCNNGA	9 cut(s)	458, 615, 746, 1028, 1087, 1136, 1213, 1300, 1367
Hpy8I	GTNNAC	1 cut(s)	1580
Hpy99I	CGWCG	3 cut(s)	110, 149, 301
HpyAV	CCTTC	6 cut(s)	41, 275, 1034, 1091, 1164, 1413
HpyCH4III	ACNGT	4 cut(s)	662, 903, 1187, 1318
HpyCH4IV	ACGT	1 cut(s)	332
HpyCH4V	TGCA	5 cut(s)	325, 519, 552, 1052, 1514
HpyF10VI	GCNNNNNNNGC	7 cut(s)	125, 141, 423, 1150, 1353, 1490, 1511
HpyF3I	CTNAG	5 cut(s)	595, 866, 879, 1383, 1443
HpySE526I	ACGT	1 cut(s)	332
Hsp92I	GRCGYC	3 cut(s)	147, 296, 350
Hsp92II	CATG	9 cut(s)	187, 411, 512, 527, 951, 1110, 1202, 1303, 1557
HspAI	GCGC	2 cut(s)	223, 426
KpnI	GGTACC	1 cut(s)	730
Ksp22I	TGATCA	2 cut(s)	693, 813
KspI	CCGCGG	1 cut(s)	173
Kzo9I	GATC	6 cut(s)	14, 391, 693, 813, 1100, 1369
LguI	GCTCTTC	1 cut(s)	1483
LmnI	GCTCC	4 cut(s)	433, 748, 1477, 1498
Lsp1109I	GCAGC	6 cut(s)	147, 297, 531, 577, 1459, 1498
LweI	GCATC	3 cut(s)	1369, 1514, 1523
MaeI	CTAG	4 cut(s)	770, 789, 1343, 1518
MaeII	ACGT	1 cut(s)	332
MaeIII	GTNAC	2 cut(s)	656, 1159
MalI	GATC	6 cut(s)	16, 393, 695, 815, 1102, 1371
MboI	GATC	6 cut(s)	14, 391, 693, 813, 1100, 1369
MboII	GAAGA	4 cut(s)	241, 262, 1043, 1500
MflI	RGATCY	2 cut(s)	1100, 1369
MhlI	GDGCHC	4 cut(s)	560, 1418, 1457, 1495
MluCI	AATT	7 cut(s)	673, 961, 1047, 1242, 1425, 1587, 1591
MlyI	GAGTC	1 cut(s)	1526
MmeI	TCCRAC	2 cut(s)	129, 1219
MseI	TTAA	3 cut(s)	852, 972, 1590
MspA1I	CMGCKG	4 cut(s)	172, 539, 1265, 1511
MspCI	CTTAAG	1 cut(s)	971
MspI	CCGG	2 cut(s)	141, 1305
MspR9I	CCNGG	3 cut(s)	731, 1175, 1461
Mva1269I	GAATGC	1 cut(s)	1081
MvaI	CCWGG	3 cut(s)	731, 1175, 1461
MvnI	CGCG	2 cut(s)	68, 172
MwoI	GCNNNNNNNGC	7 cut(s)	125, 141, 423, 1150, 1353, 1490, 1511
NcoI	CCATGG	2 cut(s)	183, 1106
NdeII	GATC	6 cut(s)	14, 391, 693, 813, 1100, 1369
NlaIII	CATG	9 cut(s)	187, 411, 512, 527, 951, 1110, 1202, 1303, 1557
NlaIV	GGNNCC	6 cut(s)	244, 405, 558, 559, 687, 728
NmeAIII	GCCGAG	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	1159
NotI	GCGGCCGC	1 cut(s)	63
NspI	RCATGY	2 cut(s)	512, 951
PaeR7I	CTCGAG	1 cut(s)	1534
PagI	TCATGA	1 cut(s)	1299
PceI	AGGCCT	1 cut(s)	128
PciSI	GCTCTTC	1 cut(s)	1483
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PctI	GAATGC	1 cut(s)	1081
PfeI	GAWTC	1 cut(s)	883
PflMI	CCANNNNNTGG	1 cut(s)	1268
PleI	GAGTC	1 cut(s)	1526
PpsI	GAGTC	1 cut(s)	1526
Ppu21I	YACGTR	1 cut(s)	333
PshBI	ATTAAT	1 cut(s)	1590
Psp124BI	GAGCTC	1 cut(s)	1495
Psp6I	CCWGG	3 cut(s)	729, 1173, 1459
PspGI	CCWGG	3 cut(s)	729, 1173, 1459
PspN4I	GGNNCC	6 cut(s)	244, 405, 558, 559, 687, 728
PspOMI	GGGCCC	1 cut(s)	556
PspPI	GGNCC	5 cut(s)	542, 556, 557, 685, 1195
PspXI	VCTCGAGB	1 cut(s)	1534
PsuI	RGATCY	2 cut(s)	1100, 1369
PvuII	CAGCTG	2 cut(s)	539, 1511
RsaI	GTAC	5 cut(s)	454, 535, 728, 1115, 1581
RsaNI	GTAC	5 cut(s)	453, 534, 727, 1114, 1580
SacI	GAGCTC	1 cut(s)	1495
SacII	CCGCGG	1 cut(s)	173
SapI	GCTCTTC	1 cut(s)	1483
SaqAI	TTAA	3 cut(s)	852, 972, 1590
Sau3AI	GATC	6 cut(s)	14, 391, 693, 813, 1100, 1369
Sau96I	GGNCC	5 cut(s)	542, 556, 557, 685, 1195
ScaI	AGTACT	2 cut(s)	454, 1115
SchI	GAGTC	1 cut(s)	1526
ScrFI	CCNGG	3 cut(s)	731, 1175, 1461
SduI	GDGCHC	4 cut(s)	560, 1418, 1457, 1495
SfaNI	GCATC	3 cut(s)	1369, 1514, 1523
SfcI	CTRYAG	1 cut(s)	448
Sfr274I	CTCGAG	1 cut(s)	1534
Sfr303I	CCGCGG	1 cut(s)	173
SgrAI	CRCCGGYG	1 cut(s)	140
SgrBI	CCGCGG	1 cut(s)	173
SinI	GGWCC	2 cut(s)	542, 1195
SlaI	CTCGAG	1 cut(s)	1534
SmlI	CTYRAG	4 cut(s)	122, 971, 1134, 1534
SmoI	CTYRAG	4 cut(s)	122, 971, 1134, 1534
Sse9I	AATT	7 cut(s)	673, 961, 1047, 1242, 1425, 1587, 1591
SseBI	AGGCCT	1 cut(s)	128
SspI	AATATT	1 cut(s)	856
SspMI	CTAG	4 cut(s)	770, 789, 1343, 1518
SstI	GAGCTC	1 cut(s)	1495
StuI	AGGCCT	1 cut(s)	128
StyD4I	CCNGG	3 cut(s)	729, 1173, 1459
StyI	CCWWGG	4 cut(s)	114, 183, 1106, 1526
TaaI	ACNGT	4 cut(s)	662, 903, 1187, 1318
TaiI	ACGT	1 cut(s)	335
TaqI	TCGA	3 cut(s)	13, 608, 1535
TaqII	GACCGA	1 cut(s)	149
TasI	AATT	7 cut(s)	673, 961, 1047, 1242, 1425, 1587, 1591
TatI	WGTACW	4 cut(s)	452, 533, 1113, 1579
TauI	GCSGC	4 cut(s)	8, 65, 68, 172
TfiI	GAWTC	1 cut(s)	883
Tru1I	TTAA	3 cut(s)	852, 972, 1590
Tru9I	TTAA	3 cut(s)	852, 972, 1590
TscAI	CASTG	2 cut(s)	906, 1059
TseFI	GTSAC	1 cut(s)	1159
TseI	GCWGC	6 cut(s)	135, 285, 519, 565, 1447, 1511
Tsp45I	GTSAC	1 cut(s)	1159
TspDTI	ATGAA	5 cut(s)	248, 725, 1110, 1288, 1352
TspGWI	ACGGA	2 cut(s)	44, 474
TspRI	CASTG	2 cut(s)	906, 1059
Van91I	CCANNNNNTGG	1 cut(s)	1268
Vha464I	CTTAAG	1 cut(s)	971
VpaK11BI	GGWCC	2 cut(s)	542, 1195
VspI	ATTAAT	1 cut(s)	1590
XapI	RAATTY	2 cut(s)	961, 1242
XceI	RCATGY	2 cut(s)	512, 951
XhoI	CTCGAG	1 cut(s)	1534
XspI	CTAG	4 cut(s)	770, 789, 1343, 1518
ZrmI	AGTACT	2 cut(s)	454, 1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.