Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001477

Physical Location & Seq

Genomic Coordinates Forward (+)

21180837 .. 21185216

Gene Structure 4380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG101300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCGAGTGAATGTGACAATCACGAGTTACGAAGGATCTCCTTGGAAGTACTGTTATAATACCAGTTCTCAAGATTTGCTAAAAGTGCCTTCTGTGACGCTTATGTTCTTGGCAAACAACAGTTTTGTGGTCCATGACCCCGTTTTTCTGATATATGATAATCAGGTAGGTACTTTTAGAAAATTAAGGACAAAATGCCATCTCAGAATACATGAGCTGTTGATCCTAAAGAGACAAATACACCTATTTCACTTACTGAAGCTACAGAGATTAAAGGGCCAATTGCGAGAGATTGTGCAAAGATCGGTGTCAGTGTCGGTGGCGGTTGGGCCGGACGCGCCGTACATGGCTACCGGGACGATGGCGGGAGCAGTTGATTTTGTCCTTCAACTCCTCTGCGAATATCGAGATCTTCAGGCTGGATTTACAGTTGGACGATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

147

Amino Acids

16.74

Weight (kDa)

9.58

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10080
fragaria_vesca	FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650
malus_domestica	MD01G1024100.v1.1 MD15G1362800.v1.1
prunus_persica	Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.6G179100_v2.0.a1
pyrus_communis	pycom01g05180 pycom15g32510
rosa_chinensis	RchiOBHm_Chr1g0350111 RchiOBHm_Chr2g0115521 RchiOBHm_Chr2g0129991
rosa_laevigata	RLG00000005996 RLG00000006248 RLG00000015274 RLG00000018190 RLG00000030771
rosa_multiflora	Rmu_sc0005625.1_g000012 Rmu_sc0007210.1_g000001 Rmu_sc0009900.1_g000009 Rmu_sc0021224.1_g000001 Rmu_sc0039462.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064010 Rroxscaffold_1G00064020 Rroxscaffold_2G00123530 Rroxscaffold_2G00128130 Rroxscaffold_2G00129010 Rroxscaffold_3G00229700 Rroxscaffold_5G00344250 Rroxscaffold_7G00197080 Rroxscaffold_7G00197100 Rroxscaffold_7G00217690
rosa_rugosa	Rorug02G0197300 Rorug02G0197300 Rorug02G0197300
rosa_samantha	Rh1CG101200 Rh1CG101300 Rh2AG254900 Rh2AG342200 Rh2BG265700 Rh2CG260100 Rh2DG263000 Rh2DG368300 Rh2DG576100
rosa_wichuraiana	Rw2G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	57
AccII	CGCG	1 cut(s)	338
AciI	CCGC	2 cut(s)	323, 365
AclWI	GGATC	2 cut(s)	43, 217
AcuI	CTGAAG	2 cut(s)	278, 398
AfaI	GTAC	3 cut(s)	50, 172, 344
AgsI	TTSAA	1 cut(s)	389
AluBI	AGCT	2 cut(s)	217, 262
AluI	AGCT	2 cut(s)	217, 262
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	2 cut(s)	43, 217
AoxI	GGCC	2 cut(s)	277, 329
AspLEI	GCGC	1 cut(s)	340
AspS9I	GGNCC	3 cut(s)	130, 277, 329
AsuC2I	CCSGG	1 cut(s)	355
AvaII	GGWCC	1 cut(s)	130
BauI	CACGAG	1 cut(s)	22
BccI	CCATC	2 cut(s)	207, 355
BceAI	ACGGC	1 cut(s)	325
BcnI	CCSGG	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	226
BfmI	CTRYAG	1 cut(s)	263
BglII	AGATCT	1 cut(s)	409
BmcAI	AGTACT	1 cut(s)	50
Bme1390I	CCNGG	1 cut(s)	355
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	3 cut(s)	130, 277, 329
BmrFI	CCNGG	1 cut(s)	355
BpuEI	CTTGAG	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	355
BsaJI	CCNNGG	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	217
BseNI	ACTGG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	383
Bsh1236I	CGCG	1 cut(s)	338
Bsh1285I	CGRYCG	1 cut(s)	440
BshFI	GGCC	2 cut(s)	279, 331
BsiEI	CGRYCG	1 cut(s)	440
BsiSI	CCGG	2 cut(s)	332, 354
BslFI	GGGAC	1 cut(s)	370
BsmAI	GTCTC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	370
BsnI	GGCC	2 cut(s)	279, 331
Bsp143I	GATC	5 cut(s)	35, 222, 302, 409, 437
BspACI	CCGC	2 cut(s)	323, 365
BspANI	GGCC	2 cut(s)	279, 331
BspCNI	CTCAG	1 cut(s)	216
BspFNI	CGCG	1 cut(s)	338
BspPI	GGATC	2 cut(s)	43, 217
BsrI	ACTGG	1 cut(s)	63
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	5 cut(s)	35, 222, 302, 409, 437
BssSI	CACGAG	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	41
Bst2BI	CACGAG	1 cut(s)	22
Bst4CI	ACNGT	3 cut(s)	53, 122, 430
BstDEI	CTNAG	1 cut(s)	203
BstFNI	CGCG	1 cut(s)	338
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	5 cut(s)	38, 225, 305, 412, 440
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	5 cut(s)	35, 222, 302, 409, 437
BstMCI	CGRYCG	1 cut(s)	440
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 337
BstSCI	CCNGG	1 cut(s)	353
BstSFI	CTRYAG	1 cut(s)	263
BstUI	CGCG	1 cut(s)	338
BstX2I	RGATCY	2 cut(s)	35, 409
BstYI	RGATCY	2 cut(s)	35, 409
BsuRI	GGCC	2 cut(s)	279, 331
BtsIMutI	CAGTG	1 cut(s)	318
CfoI	GCGC	1 cut(s)	340
Cfr13I	GGNCC	3 cut(s)	130, 277, 329
CseI	GACGC	2 cut(s)	106, 344
Csp6I	GTAC	3 cut(s)	49, 171, 343
CviAII	CATG	3 cut(s)	134, 212, 346
CviJI	RGCY	6 cut(s)	217, 262, 279, 331, 350, 419
CviKI_1	RGCY	6 cut(s)	217, 262, 279, 331, 350, 419
CviQI	GTAC	3 cut(s)	49, 171, 343
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	5 cut(s)	37, 224, 304, 411, 439
DpnII	GATC	5 cut(s)	35, 222, 302, 409, 437
Eco130I	CCWWGG	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	130
Eco57I	CTGAAG	2 cut(s)	278, 398
EcoT14I	CCWWGG	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	3 cut(s)	137, 215, 349
FaiI	YATR	7 cut(s)	57, 104, 135, 154, 156, 213, 347
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	3 cut(s)	133, 211, 345
FauI	CCCGC	1 cut(s)	358
GlaI	GCGC	1 cut(s)	339
HaeIII	GGCC	2 cut(s)	279, 331
HapII	CCGG	2 cut(s)	332, 354
HgaI	GACGC	2 cut(s)	106, 344
HhaI	GCGC	1 cut(s)	340
Hin1II	CATG	3 cut(s)	137, 215, 349
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HpaII	CCGG	2 cut(s)	332, 354
Hpy188I	TCNGA	2 cut(s)	150, 206
Hpy188III	TCNNGA	4 cut(s)	22, 71, 407, 441
HpyAV	CCTTC	3 cut(s)	26, 99, 395
HpyCH4III	ACNGT	3 cut(s)	53, 122, 430
HpyCH4V	TGCA	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 337
HpyF3I	CTNAG	1 cut(s)	203
Hsp92II	CATG	3 cut(s)	137, 215, 349
HspAI	GCGC	1 cut(s)	338
Kzo9I	GATC	5 cut(s)	35, 222, 302, 409, 437
LmnI	GCTCC	1 cut(s)	368
LpnPI	CCDG	6 cut(s)	76, 149, 345, 367, 401, 405
MaeIII	GTNAC	3 cut(s)	13, 26, 94
MalI	GATC	5 cut(s)	37, 224, 304, 411, 439
MboI	GATC	5 cut(s)	35, 222, 302, 409, 437
MboII	GAAGA	1 cut(s)	404
MfeI	CAATTG	1 cut(s)	281
MflI	RGATCY	2 cut(s)	35, 409
MluCI	AATT	2 cut(s)	182, 281
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	1 cut(s)	404
MseI	TTAA	2 cut(s)	185, 272
MspI	CCGG	2 cut(s)	332, 354
MspR9I	CCNGG	1 cut(s)	355
MunI	CAATTG	1 cut(s)	281
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	85, 337
NciI	CCSGG	1 cut(s)	355
NdeII	GATC	5 cut(s)	35, 222, 302, 409, 437
NlaIII	CATG	3 cut(s)	137, 215, 349
NmuCI	GTSAC	2 cut(s)	13, 94
Ple19I	CGATCG	1 cut(s)	440
PsiI	TTATAA	1 cut(s)	57
PspPI	GGNCC	3 cut(s)	130, 277, 329
PsuI	RGATCY	2 cut(s)	35, 409
PvuI	CGATCG	1 cut(s)	440
RsaI	GTAC	3 cut(s)	50, 172, 344
RsaNI	GTAC	3 cut(s)	49, 171, 343
SaqAI	TTAA	2 cut(s)	185, 272
Sau3AI	GATC	5 cut(s)	35, 222, 302, 409, 437
Sau96I	GGNCC	3 cut(s)	130, 277, 329
ScaI	AGTACT	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	355
SetI	ASST	5 cut(s)	168, 172, 219, 246, 264
SfcI	CTRYAG	1 cut(s)	263
SinI	GGWCC	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
Sse9I	AATT	2 cut(s)	182, 281
SsiI	CCGC	2 cut(s)	323, 365
StyD4I	CCNGG	1 cut(s)	353
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	3 cut(s)	53, 122, 430
TaqI	TCGA	1 cut(s)	406
TasI	AATT	2 cut(s)	182, 281
TatI	WGTACW	1 cut(s)	48
Tru1I	TTAA	2 cut(s)	185, 272
Tru9I	TTAA	2 cut(s)	185, 272
TscAI	CASTG	1 cut(s)	318
TseFI	GTSAC	2 cut(s)	13, 94
Tsp45I	GTSAC	2 cut(s)	13, 94
TspRI	CASTG	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	130
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.