Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005625.1

Orthogroup ID

OG0001477

Physical Location & Seq

Genomic Coordinates Reverse (-)

56457 .. 57026

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005625.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgatcattttaccctcaatcccattaaagatttaccaacccctgccactctgtcttctctctctgagaacgtcgattccctctctgtcagtcttcttcaattccggttttcttcccctccaactttacctctctctctctctctactttctctctctagatcttacttactctgagctctttcactccgagtcgccatggcggctcaccgatctctcctccttctccttcccttactcgcctccctcctcctccgtaatgcggtggcgatcactctcgtcgcgcctcatacaccgcttctctgatgaagccaaggttctcaaggcctcccgcagcaccggcgacgccaaatggctcggtctgtggccacggagaaactccatggactactacaacctcctcgtcaacaccgacttccagcgccagaagatgaagctcgccgctgccgcctctcctcggcatcatcagttccagttccttttcccctccgaaggcagcaacacggcgtcgtttggcaattacttcggcttatccgtctctccctgctcattttgcttattccttctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

189

Amino Acids

21.61

Weight (kDa)

9.54

Isoelectric Point (pI)

57.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10080
fragaria_vesca	FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650
malus_domestica	MD01G1024100.v1.1 MD15G1362800.v1.1
prunus_persica	Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.6G179100_v2.0.a1
pyrus_communis	pycom01g05180 pycom15g32510
rosa_chinensis	RchiOBHm_Chr1g0350111 RchiOBHm_Chr2g0115521 RchiOBHm_Chr2g0129991
rosa_laevigata	RLG00000005996 RLG00000006248 RLG00000015274 RLG00000018190 RLG00000030771
rosa_multiflora	Rmu_sc0005625.1_g000012 Rmu_sc0007210.1_g000001 Rmu_sc0009900.1_g000009 Rmu_sc0021224.1_g000001 Rmu_sc0039462.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064010 Rroxscaffold_1G00064020 Rroxscaffold_2G00123530 Rroxscaffold_2G00128130 Rroxscaffold_2G00129010 Rroxscaffold_3G00229700 Rroxscaffold_5G00344250 Rroxscaffold_7G00197080 Rroxscaffold_7G00197100 Rroxscaffold_7G00217690
rosa_rugosa	Rorug02G0197300 Rorug02G0197300 Rorug02G0197300
rosa_samantha	Rh1CG101200 Rh1CG101300 Rh2AG254900 Rh2AG342200 Rh2BG265700 Rh2CG260100 Rh2DG263000 Rh2DG368300 Rh2DG576100
rosa_wichuraiana	Rw2G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	283
AciI	CCGC	6 cut(s)	202, 262, 295, 331, 441, 447
AcoI	YGGCCR	1 cut(s)	365
AcyI	GRCGYC	2 cut(s)	345, 506
AfiI	CCNNNNNNNGG	3 cut(s)	261, 456, 491
AgsI	TTSAA	1 cut(s)	100
AloI	GAACNNNNNNTCC	2 cut(s)	61, 93
AluBI	AGCT	2 cut(s)	178, 436
AluI	AGCT	2 cut(s)	178, 436
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	1 cut(s)	541
AoxI	GGCC	2 cut(s)	324, 365
ApeKI	GCWGC	3 cut(s)	333, 443, 495
AspLEI	GCGC	2 cut(s)	285, 423
AsuHPI	GGTGA	1 cut(s)	199
BalI	TGGCCA	1 cut(s)	367
BanII	GRGCYC	1 cut(s)	180
BbsI	GAAGAC	2 cut(s)	47, 85
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	3 cut(s)	345, 430, 507
BceAI	ACGGC	1 cut(s)	519
BcgI	CGANNNNNNTGC	2 cut(s)	505, 539
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	541
BfaI	CTAG	1 cut(s)	158
BfoI	RGCGCY	1 cut(s)	424
BglI	GCCNNNNNGGC	1 cut(s)	202
BglII	AGATCT	1 cut(s)	160
BisI	GCNGC	6 cut(s)	203, 334, 441, 444, 447, 496
BlsI	GCNGC	6 cut(s)	204, 335, 442, 445, 448, 497
BmsI	GCATC	1 cut(s)	469
BpiI	GAAGAC	2 cut(s)	47, 85
BpuEI	CTTGAG	1 cut(s)	305
BsaHI	GRCGYC	2 cut(s)	345, 506
BsaJI	CCNNGG	5 cut(s)	197, 312, 368, 381, 455
BsaWI	WCCGGW	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	3 cut(s)	261, 456, 491
Bse118I	RCCGGY	1 cut(s)	338
Bse1I	ACTGG	1 cut(s)	472
BseDI	CCNNGG	5 cut(s)	197, 312, 368, 381, 455
BseLI	CCNNNNNNNGG	3 cut(s)	261, 456, 491
BseMII	CTCAG	2 cut(s)	56, 165
BseNI	ACTGG	1 cut(s)	472
BseRI	GAGGAG	5 cut(s)	208, 238, 241, 389, 444
BseXI	GCAGC	3 cut(s)	345, 430, 507
Bsh1236I	CGCG	1 cut(s)	283
BshFI	GGCC	2 cut(s)	326, 367
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	2 cut(s)	105, 339
BslI	CCNNNNNNNGG	3 cut(s)	261, 456, 491
BsmAI	GTCTC	1 cut(s)	541
BsmBI	CGTCTC	1 cut(s)	541
BsnI	GGCC	2 cut(s)	326, 367
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	4 cut(s)	3, 160, 211, 269
Bsp19I	CCATGG	2 cut(s)	197, 381
BspACI	CCGC	6 cut(s)	202, 262, 295, 331, 441, 447
BspANI	GGCC	2 cut(s)	326, 367
BspCNI	CTCAG	2 cut(s)	57, 166
BspFNI	CGCG	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	472
BssAI	RCCGGY	1 cut(s)	338
BssECI	CCNNGG	5 cut(s)	197, 312, 368, 381, 455
BssMI	GATC	4 cut(s)	3, 160, 211, 269
BssNI	GRCGYC	2 cut(s)	345, 506
BssT1I	CCWWGG	3 cut(s)	197, 312, 381
BstACI	GRCGYC	2 cut(s)	345, 506
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	2 cut(s)	65, 174
BstDSI	CCRYGG	3 cut(s)	197, 368, 381
BstFNI	CGCG	1 cut(s)	283
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	2 cut(s)	285, 423
BstKTI	GATC	4 cut(s)	6, 163, 214, 272
BstMAI	GTCTC	1 cut(s)	541
BstMBI	GATC	4 cut(s)	3, 160, 211, 269
BstMWI	GCNNNNNNNGC	4 cut(s)	202, 339, 446, 552
BstUI	CGCG	1 cut(s)	283
BstV1I	GCAGC	3 cut(s)	345, 430, 507
BstV2I	GAAGAC	2 cut(s)	47, 85
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuRI	GGCC	2 cut(s)	326, 367
BtgI	CCRYGG	3 cut(s)	197, 368, 381
Cac8I	GCNNGC	1 cut(s)	438
CfoI	GCGC	2 cut(s)	285, 423
Cfr10I	RCCGGY	1 cut(s)	338
CseI	GACGC	2 cut(s)	353, 495
CviAII	CATG	2 cut(s)	198, 382
CviJI	RGCY	8 cut(s)	178, 205, 311, 326, 355, 367, 436, 528
CviKI_1	RGCY	8 cut(s)	178, 205, 311, 326, 355, 367, 436, 528
DdeI	CTNAG	2 cut(s)	65, 174
DpnI	GATC	4 cut(s)	5, 162, 213, 271
DpnII	GATC	4 cut(s)	3, 160, 211, 269
EaeI	YGGCCR	1 cut(s)	365
Ecl136II	GAGCTC	1 cut(s)	178
Eco130I	CCWWGG	3 cut(s)	197, 312, 381
Eco147I	AGGCCT	1 cut(s)	326
Eco24I	GRGCYC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	178
EcoT14I	CCWWGG	3 cut(s)	197, 312, 381
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	3 cut(s)	197, 312, 381
Esp3I	CGTCTC	1 cut(s)	541
FaeI	CATG	2 cut(s)	201, 385
FaiI	YATR	3 cut(s)	199, 290, 383
FatI	CATG	2 cut(s)	197, 381
FauI	CCCGC	1 cut(s)	338
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	6 cut(s)	203, 334, 441, 444, 447, 496
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	6 cut(s)	203, 334, 441, 444, 447, 496
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	2 cut(s)	284, 422
GluI	GCNGC	6 cut(s)	203, 334, 441, 444, 447, 496
HaeII	RGCGCY	1 cut(s)	424
HaeIII	GGCC	2 cut(s)	326, 367
HapII	CCGG	2 cut(s)	105, 339
HgaI	GACGC	2 cut(s)	353, 495
HhaI	GCGC	2 cut(s)	285, 423
Hin1I	GRCGYC	2 cut(s)	345, 506
Hin1II	CATG	2 cut(s)	201, 385
Hin6I	GCGC	2 cut(s)	283, 421
HinP1I	GCGC	2 cut(s)	283, 421
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	2 cut(s)	76, 191
HpaII	CCGG	2 cut(s)	105, 339
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	5 cut(s)	66, 175, 190, 304, 490
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	4 cut(s)	76, 283, 347, 511
HpyAV	CCTTC	3 cut(s)	232, 238, 485
HpyCH4IV	ACGT	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	4 cut(s)	202, 339, 446, 552
HpyF3I	CTNAG	2 cut(s)	65, 174
HpySE526I	ACGT	1 cut(s)	71
Hsp92I	GRCGYC	2 cut(s)	345, 506
Hsp92II	CATG	2 cut(s)	201, 385
HspAI	GCGC	2 cut(s)	283, 421
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 160, 211, 269
LpnPI	CCDG	7 cut(s)	56, 118, 352, 431, 437, 485, 556
Lsp1109I	GCAGC	3 cut(s)	345, 430, 507
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	1 cut(s)	71
MalI	GATC	4 cut(s)	5, 162, 213, 271
MboI	GATC	4 cut(s)	3, 160, 211, 269
MboII	GAAGA	5 cut(s)	47, 85, 88, 104, 439
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	180
MlsI	TGGCCA	1 cut(s)	367
MluCI	AATT	2 cut(s)	100, 517
MluNI	TGGCCA	1 cut(s)	367
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	145
Mox20I	TGGCCA	1 cut(s)	367
MscI	TGGCCA	1 cut(s)	367
MseI	TTAA	1 cut(s)	26
Msp20I	TGGCCA	1 cut(s)	367
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	2 cut(s)	105, 339
MvnI	CGCG	1 cut(s)	283
MwoI	GCNNNNNNNGC	4 cut(s)	202, 339, 446, 552
NcoI	CCATGG	2 cut(s)	197, 381
NdeII	GATC	4 cut(s)	3, 160, 211, 269
NlaIII	CATG	2 cut(s)	201, 385
NmeAIII	GCCGAG	1 cut(s)	436
PceI	AGGCCT	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	2 cut(s)	408, 531
PfeI	GAWTC	1 cut(s)	76
PkrI	GCNGC	6 cut(s)	204, 335, 442, 445, 448, 497
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp124BI	GAGCTC	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	160
SacI	GAGCTC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	6 cut(s)	203, 334, 441, 444, 447, 496
Sau3AI	GATC	4 cut(s)	3, 160, 211, 269
SchI	GAGTC	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	6 cut(s)	74, 132, 180, 318, 399, 438
SfaNI	GCATC	1 cut(s)	469
SgrAI	CRCCGGYG	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	2 cut(s)	100, 517
SseBI	AGGCCT	1 cut(s)	326
SsiI	CCGC	6 cut(s)	202, 262, 295, 331, 441, 447
SspMI	CTAG	1 cut(s)	158
SstI	GAGCTC	1 cut(s)	180
StuI	AGGCCT	1 cut(s)	326
StyI	CCWWGG	3 cut(s)	197, 312, 381
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	1 cut(s)	74
TaqII	GACCGA	1 cut(s)	347
TasI	AATT	2 cut(s)	100, 517
TauI	GCSGC	3 cut(s)	205, 443, 449
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TseI	GCWGC	3 cut(s)	333, 443, 495
TspDTI	ATGAA	2 cut(s)	321, 446
TspGWI	ACGGA	3 cut(s)	244, 385, 523
XbaI	TCTAGA	1 cut(s)	157
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.