Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021224.1

Orthogroup ID

OG0001477

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 254

Gene Structure 253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021224.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 253 bp

atggcggcttaccgatctctcctccttctccttcccttactcgcctccctcctcctccgtaatgcggcggcgaacactctcttgttgcgcctgatacaccgcttctcagacgaagccaaggctctcaaggcctcccgcagcaccggcgactccaaatggctcggtcggtggctgcggagaaactccatggactactaccacctcctcgtcaacactgacttccaccgccagaagatgaagctagccgccatcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

84

Amino Acids

9.69

Weight (kDa)

10.97

Isoelectric Point (pI)

57.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10080
fragaria_vesca	FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650
malus_domestica	MD01G1024100.v1.1 MD15G1362800.v1.1
prunus_persica	Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.6G179100_v2.0.a1
pyrus_communis	pycom01g05180 pycom15g32510
rosa_chinensis	RchiOBHm_Chr1g0350111 RchiOBHm_Chr2g0115521 RchiOBHm_Chr2g0129991
rosa_laevigata	RLG00000005996 RLG00000006248 RLG00000015274 RLG00000018190 RLG00000030771
rosa_multiflora	Rmu_sc0005625.1_g000012 Rmu_sc0007210.1_g000001 Rmu_sc0009900.1_g000009 Rmu_sc0021224.1_g000001 Rmu_sc0039462.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064010 Rroxscaffold_1G00064020 Rroxscaffold_2G00123530 Rroxscaffold_2G00128130 Rroxscaffold_2G00129010 Rroxscaffold_3G00229700 Rroxscaffold_5G00344250 Rroxscaffold_7G00197080 Rroxscaffold_7G00197100 Rroxscaffold_7G00217690
rosa_rugosa	Rorug02G0197300 Rorug02G0197300 Rorug02G0197300
rosa_samantha	Rh1CG101200 Rh1CG101300 Rh2AG254900 Rh2AG342200 Rh2BG265700 Rh2CG260100 Rh2DG263000 Rh2DG368300 Rh2DG576100
rosa_wichuraiana	Rw2G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	5, 65, 68, 100, 136, 175, 226, 246
AfiI	CCNNNNNNNGG	1 cut(s)	64
AluBI	AGCT	1 cut(s)	241
AluI	AGCT	1 cut(s)	241
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	2 cut(s)	138, 172
AspLEI	GCGC	1 cut(s)	90
AsuNHI	GCTAGC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	150, 159
BfaI	CTAG	1 cut(s)	242
BisI	GCNGC	6 cut(s)	6, 66, 69, 139, 173, 246
BlsI	GCNGC	6 cut(s)	7, 67, 70, 140, 174, 247
BmtI	GCTAGC	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	117, 186
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse118I	RCCGGY	1 cut(s)	143
BseDI	CCNNGG	2 cut(s)	117, 186
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	120
BseRI	GAGGAG	4 cut(s)	11, 41, 44, 194
BseXI	GCAGC	2 cut(s)	150, 159
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	1 cut(s)	131
BsiEI	CGRYCG	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	64
BsnI	GGCC	1 cut(s)	131
Bsp143I	GATC	1 cut(s)	14
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	8 cut(s)	5, 65, 68, 100, 136, 175, 226, 246
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	1 cut(s)	119
BspOI	GCTAGC	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	117, 186
BssMI	GATC	1 cut(s)	14
BssT1I	CCWWGG	2 cut(s)	117, 186
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	1 cut(s)	106
BstDSI	CCRYGG	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 144
BstV1I	GCAGC	2 cut(s)	150, 159
BsuRI	GGCC	1 cut(s)	131
BtgI	CCRYGG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	243
CfoI	GCGC	1 cut(s)	90
Cfr10I	RCCGGY	1 cut(s)	143
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	8 cut(s)	8, 116, 122, 131, 160, 172, 241, 245
CviKI_1	RGCY	8 cut(s)	8, 116, 122, 131, 160, 172, 241, 245
DdeI	CTNAG	1 cut(s)	106
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
Eco130I	CCWWGG	2 cut(s)	117, 186
Eco147I	AGGCCT	1 cut(s)	131
EcoT14I	CCWWGG	2 cut(s)	117, 186
ErhI	CCWWGG	2 cut(s)	117, 186
FaeI	CATG	1 cut(s)	190
FaiI	YATR	1 cut(s)	188
FatI	CATG	1 cut(s)	186
FauI	CCCGC	1 cut(s)	143
Fnu4HI	GCNGC	6 cut(s)	6, 66, 69, 139, 173, 246
Fsp4HI	GCNGC	6 cut(s)	6, 66, 69, 139, 173, 246
FspBI	CTAG	1 cut(s)	242
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	6 cut(s)	6, 66, 69, 139, 173, 246
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	1 cut(s)	144
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	190
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	144
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	109
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	2 cut(s)	35, 41
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 144
HpyF3I	CTNAG	1 cut(s)	106
Hsp92II	CATG	1 cut(s)	190
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	14
LpnPI	CCDG	3 cut(s)	104, 157, 242
Lsp1109I	GCAGC	2 cut(s)	150, 159
MaeI	CTAG	1 cut(s)	242
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	1 cut(s)	244
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	8 cut(s)	32, 55, 59, 62, 65, 142, 212, 215
MspI	CCGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	128, 144
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	14
NheI	GCTAGC	1 cut(s)	241
NlaIII	CATG	1 cut(s)	190
PceI	AGGCCT	1 cut(s)	131
PkrI	GCNGC	6 cut(s)	7, 67, 70, 140, 174, 247
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
SatI	GCNGC	6 cut(s)	6, 66, 69, 139, 173, 246
Sau3AI	GATC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	143
SetI	ASST	2 cut(s)	204, 243
SgrAI	CRCCGGYG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SseBI	AGGCCT	1 cut(s)	131
SsiI	CCGC	8 cut(s)	5, 65, 68, 100, 136, 175, 226, 246
SspMI	CTAG	1 cut(s)	242
StuI	AGGCCT	1 cut(s)	131
StyI	CCWWGG	2 cut(s)	117, 186
TaqII	GACCGA	1 cut(s)	152
TauI	GCSGC	4 cut(s)	8, 68, 71, 248
TscAI	CASTG	1 cut(s)	220
TseI	GCWGC	2 cut(s)	138, 172
TspDTI	ATGAA	1 cut(s)	251
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	220
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.