Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001477

Physical Location & Seq

Genomic Coordinates Reverse (-)

40919944 .. 40920842

Gene Structure 899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00197100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCAGGATAGAGATTTGAGCGAGTATAGTCCGTCTGGCTCAAACACCAGCAAGCATGTGTCTTGCAGCCATGAGTTATGTACAGCTGGTCCAAACTGCAAGGGCCCCAAGCAGCCCTGCCTTTACACTATTGAATACTTCTCCGAAAATACATCGAGTTCTGGATTGCTTGTGGAGGATTTATTACATCTTGTAGCGGGGGGTAACGGTGTATCAAACAATTCTATTCAGGCCCCTGTGACCATAGGATGTGGTATGAAGCAAAGTGGTGTGTACCTGGATGGCATTGCTCCTGATGGTCTTATGGGTTTAGGACTTGGAGAGGGACCAAATACTCAACAGTCTACATCCTTCTTGCCCTCAAACGGAAACTATGAAACCTACTTTGTTGGTGTGGAAGCATGTTGTATTGGAAATTCTTGTCTTAAGCAGACAAGCTTCAAGGCATTGGTTGATACTGGGACATCATTTACATTCCTTCCAGAAGAATTATATGATAAAATTGCAGTGGAGTTTGATAAGCGAGTGAATGCGACAATCACGAGTTATGAAGGATCTCCATGGAAGTACTACTATAATACCAGTTCTCAAGATTTGCTAAAAGTGCCTTCTGTGACGCTTATGTTCCTGGCAAACAACAGTTTTGTGGTCCATGACCCCGTTTTCCCGATATATGATAATCAGGGAGTTGTTGGAATTTGTTTAGCCATACAGCCAGCGGATGGTGATATTGGAACGATTGGACGTGATCAATGGATTGACTTGGCGGACGATGGTGAATCGTTGATTGGGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

265

Amino Acids

28.41

Weight (kDa)

4.35

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	8 - 108	1.1e-12	Xylanase inhibitor N-terminal
Asp	PF00026	126 - 236	8.1e-06	Eukaryotic aspartyl protease
TAXi_C	PF14541	143 - 240	9.5e-08	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10080
fragaria_vesca	FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650 FvH4_1g21650
malus_domestica	MD01G1024100.v1.1 MD15G1362800.v1.1
prunus_persica	Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.1G511100_v2.0.a1 Prupe.6G179100_v2.0.a1
pyrus_communis	pycom01g05180 pycom15g32510
rosa_chinensis	RchiOBHm_Chr1g0350111 RchiOBHm_Chr2g0115521 RchiOBHm_Chr2g0129991
rosa_laevigata	RLG00000005996 RLG00000006248 RLG00000015274 RLG00000018190 RLG00000030771
rosa_multiflora	Rmu_sc0005625.1_g000012 Rmu_sc0007210.1_g000001 Rmu_sc0009900.1_g000009 Rmu_sc0021224.1_g000001 Rmu_sc0039462.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064010 Rroxscaffold_1G00064020 Rroxscaffold_2G00123530 Rroxscaffold_2G00128130 Rroxscaffold_2G00129010 Rroxscaffold_3G00229700 Rroxscaffold_5G00344250 Rroxscaffold_7G00197080 Rroxscaffold_7G00197100 Rroxscaffold_7G00217690
rosa_rugosa	Rorug02G0197300 Rorug02G0197300 Rorug02G0197300
rosa_samantha	Rh1CG101200 Rh1CG101300 Rh2AG254900 Rh2AG342200 Rh2BG265700 Rh2CG260100 Rh2DG263000 Rh2DG368300 Rh2DG576100
rosa_wichuraiana	Rw2G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	722
AccI	GTMKAC	1 cut(s)	344
AciI	CCGC	3 cut(s)	197, 719, 767
AclWI	GGATC	1 cut(s)	562
AcsI	RAATTY	2 cut(s)	415, 696
AfaI	GTAC	3 cut(s)	82, 275, 569
AfiI	CCNNNNNNNGG	2 cut(s)	365, 722
AflII	CTTAAG	1 cut(s)	425
AgsI	TTSAA	2 cut(s)	134, 442
AjiI	CACGTC	1 cut(s)	746
AjnI	CCWGG	2 cut(s)	276, 627
AjuI	GAANNNNNNNTTGG	1 cut(s)	771
AluBI	AGCT	2 cut(s)	86, 438
AluI	AGCT	2 cut(s)	86, 438
AlwI	GGATC	1 cut(s)	562
AoxI	GGCC	2 cut(s)	103, 231
ApaI	GGGCCC	1 cut(s)	107
ApeKI	GCWGC	2 cut(s)	66, 112
ApoI	RAATTY	2 cut(s)	415, 696
AspS9I	GGNCC	6 cut(s)	89, 103, 104, 232, 326, 649
AsuHPI	GGTGA	2 cut(s)	737, 788
AvaII	GGWCC	3 cut(s)	89, 326, 649
BaeGI	GKGCMC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	107
BauI	CACGAG	1 cut(s)	541
BbvI	GCAGC	2 cut(s)	78, 124
BccI	CCATC	4 cut(s)	275, 290, 716, 767
BciT130I	CCWGG	2 cut(s)	278, 629
BclI	TGATCA	1 cut(s)	748
BfrI	CTTAAG	1 cut(s)	425
BisI	GCNGC	2 cut(s)	67, 113
BlsI	GCNGC	2 cut(s)	68, 114
BmcAI	AGTACT	1 cut(s)	569
Bme1390I	CCNGG	2 cut(s)	278, 629
Bme18I	GGWCC	3 cut(s)	89, 326, 649
BmgBI	CACGTC	1 cut(s)	746
BmgT120I	GGNCC	6 cut(s)	89, 103, 104, 232, 326, 649
BmiI	GGNNCC	4 cut(s)	105, 106, 234, 327
BmrFI	CCNGG	2 cut(s)	278, 629
BmrI	ACTGGG	1 cut(s)	468
BmuI	ACTGGG	1 cut(s)	468
BpuEI	CTTGAG	1 cut(s)	573
BsaJI	CCNNGG	1 cut(s)	560
Bsc4I	CCNNNNNNNGG	2 cut(s)	365, 722
Bse1I	ACTGG	2 cut(s)	463, 582
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	2 cut(s)	278, 629
BseDI	CCNNGG	1 cut(s)	560
BseGI	GGATG	4 cut(s)	254, 286, 347, 727
BseLI	CCNNNNNNNGG	2 cut(s)	365, 722
BseMI	GCAATG	1 cut(s)	285
BseNI	ACTGG	2 cut(s)	463, 582
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	78, 124
BshFI	GGCC	2 cut(s)	105, 233
BslFI	GGGAC	2 cut(s)	339, 475
BslI	CCNNNNNNNGG	2 cut(s)	365, 722
BsmFI	GGGAC	2 cut(s)	339, 475
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	2 cut(s)	105, 233
Bsp120I	GGGCCC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp1407I	TGTACA	1 cut(s)	80
Bsp143I	GATC	2 cut(s)	554, 748
Bsp19I	CCATGG	1 cut(s)	560
BspACI	CCGC	3 cut(s)	197, 719, 767
BspANI	GGCC	2 cut(s)	105, 233
BspLI	GGNNCC	4 cut(s)	105, 106, 234, 327
BspPI	GGATC	1 cut(s)	562
BspTI	CTTAAG	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	285
BsrGI	TGTACA	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	463, 582
BssECI	CCNNGG	1 cut(s)	560
BssMI	GATC	2 cut(s)	554, 748
BssSI	CACGAG	1 cut(s)	541
BssT1I	CCWWGG	1 cut(s)	560
Bst2BI	CACGAG	1 cut(s)	541
Bst2UI	CCWGG	2 cut(s)	278, 629
Bst4CI	ACNGT	3 cut(s)	209, 342, 641
BstAFI	CTTAAG	1 cut(s)	425
BstAUI	TGTACA	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	53, 717
BstDSI	CCRYGG	1 cut(s)	560
BstF5I	GGATG	4 cut(s)	254, 286, 347, 727
BstKTI	GATC	2 cut(s)	557, 751
BstMBI	GATC	2 cut(s)	554, 748
BstMWI	GCNNNNNNNGC	1 cut(s)	604
BstNI	CCWGG	2 cut(s)	278, 629
BstNSI	RCATGY	2 cut(s)	59, 405
BstSCI	CCNGG	2 cut(s)	276, 627
BstSLI	GKGCMC	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	78, 124
BstX2I	RGATCY	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	554
BsuRI	GGCC	2 cut(s)	105, 233
BtgI	CCRYGG	1 cut(s)	560
BtrI	CACGTC	1 cut(s)	746
BtsCI	GGATG	4 cut(s)	254, 286, 347, 727
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	1 cut(s)	513
Cac8I	GCNNGC	2 cut(s)	53, 717
Cfr13I	GGNCC	6 cut(s)	89, 103, 104, 232, 326, 649
CseI	GACGC	1 cut(s)	625
Csp6I	GTAC	3 cut(s)	81, 274, 568
CviAII	CATG	5 cut(s)	56, 71, 402, 561, 653
CviQI	GTAC	3 cut(s)	81, 274, 568
DpnI	GATC	2 cut(s)	556, 750
DpnII	GATC	2 cut(s)	554, 748
EciI	GGCGGA	1 cut(s)	782
Eco130I	CCWWGG	1 cut(s)	560
Eco24I	GRGCYC	1 cut(s)	107
Eco47I	GGWCC	3 cut(s)	89, 326, 649
EcoO109I	RGGNCCY	3 cut(s)	103, 104, 232
EcoRII	CCWGG	2 cut(s)	276, 627
EcoT14I	CCWWGG	1 cut(s)	560
EcoT38I	GRGCYC	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	560
FaeI	CATG	5 cut(s)	59, 74, 405, 564, 656
FaqI	GGGAC	2 cut(s)	339, 475
FatI	CATG	5 cut(s)	55, 70, 401, 560, 652
FauI	CCCGC	1 cut(s)	190
FbaI	TGATCA	1 cut(s)	748
FblI	GTMKAC	1 cut(s)	344
Fnu4HI	GCNGC	2 cut(s)	67, 113
FokI	GGATG	4 cut(s)	261, 293, 334, 734
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	2 cut(s)	67, 113
GluI	GCNGC	2 cut(s)	67, 113
HaeIII	GGCC	2 cut(s)	105, 233
HgaI	GACGC	1 cut(s)	625
Hin1II	CATG	5 cut(s)	59, 74, 405, 564, 656
HindIII	AAGCTT	1 cut(s)	436
HinfI	GANTC	1 cut(s)	779
HphI	GGTGA	2 cut(s)	737, 788
Hpy166II	GTNNAC	2 cut(s)	274, 345
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	6 cut(s)	162, 293, 482, 541, 590, 667
Hpy8I	GTNNAC	2 cut(s)	274, 345
HpyAV	CCTTC	4 cut(s)	361, 488, 545, 618
HpyCH4III	ACNGT	3 cut(s)	209, 342, 641
HpyCH4IV	ACGT	1 cut(s)	745
HpyCH4V	TGCA	4 cut(s)	4, 66, 99, 506
HpyF10VI	GCNNNNNNNGC	1 cut(s)	604
HpySE526I	ACGT	1 cut(s)	745
Hsp92II	CATG	5 cut(s)	59, 74, 405, 564, 656
Ksp22I	TGATCA	1 cut(s)	748
Kzo9I	GATC	2 cut(s)	554, 748
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	2 cut(s)	78, 124
MaeII	ACGT	1 cut(s)	745
MaeIII	GTNAC	3 cut(s)	203, 238, 613
MalI	GATC	2 cut(s)	556, 750
MboI	GATC	2 cut(s)	554, 748
MboII	GAAGA	1 cut(s)	497
MflI	RGATCY	1 cut(s)	554
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	5 cut(s)	220, 415, 488, 501, 696
MmeI	TCCRAC	1 cut(s)	673
MnlI	CCTC	3 cut(s)	169, 316, 370
MseI	TTAA	1 cut(s)	426
MspA1I	CMGCKG	2 cut(s)	86, 719
MspCI	CTTAAG	1 cut(s)	425
MspR9I	CCNGG	2 cut(s)	278, 629
Mva1269I	GAATGC	1 cut(s)	535
MvaI	CCWGG	2 cut(s)	278, 629
MwoI	GCNNNNNNNGC	1 cut(s)	604
NcoI	CCATGG	1 cut(s)	560
NdeII	GATC	2 cut(s)	554, 748
NlaIII	CATG	5 cut(s)	59, 74, 405, 564, 656
NlaIV	GGNNCC	4 cut(s)	105, 106, 234, 327
NmuCI	GTSAC	2 cut(s)	238, 613
NspI	RCATGY	2 cut(s)	59, 405
PctI	GAATGC	1 cut(s)	535
PfeI	GAWTC	1 cut(s)	779
PflMI	CCANNNNNTGG	1 cut(s)	722
PkrI	GCNGC	2 cut(s)	68, 114
Psp6I	CCWGG	2 cut(s)	276, 627
PspGI	CCWGG	2 cut(s)	276, 627
PspN4I	GGNNCC	4 cut(s)	105, 106, 234, 327
PspOMI	GGGCCC	1 cut(s)	103
PspPI	GGNCC	6 cut(s)	89, 103, 104, 232, 326, 649
PsuI	RGATCY	1 cut(s)	554
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	3 cut(s)	82, 275, 569
RsaNI	GTAC	3 cut(s)	81, 274, 568
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	2 cut(s)	67, 113
Sau3AI	GATC	2 cut(s)	554, 748
Sau96I	GGNCC	6 cut(s)	89, 103, 104, 232, 326, 649
ScaI	AGTACT	1 cut(s)	569
ScrFI	CCNGG	2 cut(s)	278, 629
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	5 cut(s)	88, 279, 383, 440, 748
SinI	GGWCC	3 cut(s)	89, 326, 649
SmlI	CTYRAG	2 cut(s)	425, 588
SmoI	CTYRAG	2 cut(s)	425, 588
Sse9I	AATT	5 cut(s)	220, 415, 488, 501, 696
SsiI	CCGC	3 cut(s)	197, 719, 767
StyD4I	CCNGG	2 cut(s)	276, 627
StyI	CCWWGG	1 cut(s)	560
TaaI	ACNGT	3 cut(s)	209, 342, 641
TaiI	ACGT	1 cut(s)	748
TaqI	TCGA	1 cut(s)	155
TasI	AATT	5 cut(s)	220, 415, 488, 501, 696
TatI	WGTACW	2 cut(s)	80, 567
TfiI	GAWTC	1 cut(s)	779
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TscAI	CASTG	1 cut(s)	513
TseFI	GTSAC	2 cut(s)	238, 613
TseI	GCWGC	2 cut(s)	66, 112
Tsp45I	GTSAC	2 cut(s)	238, 613
TspDTI	ATGAA	3 cut(s)	272, 390, 564
TspGWI	ACGGA	2 cut(s)	21, 381
TspRI	CASTG	1 cut(s)	513
Van91I	CCANNNNNTGG	1 cut(s)	722
Vha464I	CTTAAG	1 cut(s)	425
VpaK11BI	GGWCC	3 cut(s)	89, 326, 649
XapI	RAATTY	2 cut(s)	415, 696
XceI	RCATGY	2 cut(s)	59, 405
XmiI	GTMKAC	1 cut(s)	344
ZrmI	AGTACT	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.