FvH4_2g02784

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001683
Physical Location & Seq
Forward (+)
2219352 .. 2222174
2823 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02784.t1

Sequence Viewer

Length: 645 bp
ATGGTGACGAATAGAGATGATCGGACAAAACGATTGAATTCCACAACTGATCAACGCCTGATCGGGCTCTCTCCTGAGCTTTCTGGTGAGCAAAACGACGAAATTCCTCCGGCGAATGTCTCCGGCGACACTGCTCTTCGCCAACAGCTTGATCATATGCAGGCACATGAGGTTGTATGGGATCCTTACTGTGGTCATAGGGATTCTCATCCATTATTAGATATTTCATTCTATACAAGGATACTAAAGTGTTTGGATATTGTTGAACCATATTATCCAGATAGGGTTGTGTACCAGTACTTTGATGGGTTGTGGCAACAATGGCGAGATCATGTGTTGGCTGATGCCAACCGAAGTACTCCGATTGCATCTAGAAGCTATCACGGCGAGGCGGAGCTTAGGGTGGGATTGAGGTGGATGAGAGAAGGGAGAGGACCTGGGTATGGTGTTGGCTTTGATCGGAGAGTGAGGTGGTGCGGCTGTCGCAGGGAAGAATTCCTCTACGTGCATATACTTACTGGTGACTCATTGGTGATAGACTTGACACTTCCAGTTCCACCAGGAACAGCTCTGTGGAAAATATGTTTCAACTTTCAACATACAAATTTAGGGCTGTTATTCCCTAATCTATCACAAACAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

215

Amino Acids

24.76

Weight (kDa)

5.9

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 44 - 120 2.8e-07 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 392, 477
AclWI GGATC 2 cut(s) 176, 189
AcsI RAATTY 4 cut(s) 37, 102, 494, 604
AfaI GTAC 3 cut(s) 293, 299, 358
AfiI CCNNNNNNNGG 2 cut(s) 191, 443
AgsI TTSAA 4 cut(s) 37, 266, 589, 596
AjnI CCWGG 2 cut(s) 436, 559
AluBI AGCT 5 cut(s) 79, 148, 378, 397, 569
AluI AGCT 5 cut(s) 79, 148, 378, 397, 569
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 2 cut(s) 176, 189
ApoI RAATTY 4 cut(s) 37, 102, 494, 604
AspS9I GGNCC 1 cut(s) 434
AsuHPI GGTGA 4 cut(s) 16, 98, 533, 544
AvaII GGWCC 1 cut(s) 434
BaeI ACNNNNGTAYC 2 cut(s) 233, 266
BamHI GGATCC 1 cut(s) 181
BanII GRGCYC 1 cut(s) 69
BccI CCATC 1 cut(s) 299
BceAI ACGGC 1 cut(s) 400
BciT130I CCWGG 2 cut(s) 438, 561
BciVI GTATCC 1 cut(s) 234
BclI TGATCA 2 cut(s) 49, 151
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 1 cut(s) 372
BfuI GTATCC 1 cut(s) 234
BisI GCNGC 1 cut(s) 478
BlsI GCNGC 1 cut(s) 479
BmcAI AGTACT 2 cut(s) 299, 358
Bme1390I CCNGG 2 cut(s) 438, 561
Bme18I GGWCC 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 434
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 2 cut(s) 438, 561
BmsI GCATC 2 cut(s) 334, 377
Bpu10I CCTNAGC 2 cut(s) 75, 398
BsaAI YACGTR 1 cut(s) 505
BsaBI GATNNNNATC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 437
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 443
Bse1I ACTGG 3 cut(s) 295, 523, 551
Bse8I GATNNNNATC 1 cut(s) 207
BseBI CCWGG 2 cut(s) 438, 561
BseDI CCNNGG 1 cut(s) 437
BseGI GGATG 2 cut(s) 208, 423
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 2 cut(s) 191, 443
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 3 cut(s) 295, 523, 551
BsiSI CCGG 2 cut(s) 110, 123
BslI CCNNNNNNNGG 2 cut(s) 191, 443
BsmAI GTCTC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 7 cut(s) 19, 49, 60, 151, 181, 328, 457
BspACI CCGC 2 cut(s) 392, 477
BspCNI CTCAG 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 183
BspPI GGATC 2 cut(s) 176, 189
BspQI GCTCTTC 1 cut(s) 141
BsrI ACTGG 3 cut(s) 295, 523, 551
BssECI CCNNGG 1 cut(s) 437
BssMI GATC 7 cut(s) 19, 49, 60, 151, 181, 328, 457
Bst2UI CCWGG 2 cut(s) 438, 561
Bst4CI ACNGT 1 cut(s) 191
Bst6I CTCTTC 1 cut(s) 141
BstBAI YACGTR 1 cut(s) 505
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 2 cut(s) 75, 398
BstF5I GGATG 2 cut(s) 208, 423
BstKTI GATC 7 cut(s) 22, 52, 63, 154, 184, 331, 460
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 7 cut(s) 19, 49, 60, 151, 181, 328, 457
BstMWI GCNNNNNNNGC 3 cut(s) 322, 384, 483
BstNI CCWGG 2 cut(s) 438, 561
BstSCI CCNGG 2 cut(s) 436, 559
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuI GTATCC 1 cut(s) 234
BtsCI GGATG 2 cut(s) 208, 423
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 434
Csp6I GTAC 3 cut(s) 292, 298, 357
CviAII CATG 2 cut(s) 167, 332
CviQI GTAC 3 cut(s) 292, 298, 357
DdeI CTNAG 2 cut(s) 75, 398
DpnI GATC 7 cut(s) 21, 51, 62, 153, 183, 330, 459
DpnII GATC 7 cut(s) 19, 49, 60, 151, 181, 328, 457
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
EciI GGCGGA 1 cut(s) 407
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 434
EcoO109I RGGNCCY 1 cut(s) 434
EcoRI GAATTC 2 cut(s) 37, 494
EcoRII CCWGG 2 cut(s) 436, 559
EcoT38I GRGCYC 1 cut(s) 69
FaeI CATG 2 cut(s) 170, 335
FatI CATG 2 cut(s) 166, 331
FauNDI CATATG 1 cut(s) 156
FbaI TGATCA 2 cut(s) 49, 151
Fnu4HI GCNGC 1 cut(s) 478
FokI GGATG 2 cut(s) 195, 430
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 478
FspBI CTAG 1 cut(s) 372
GluI GCNGC 1 cut(s) 478
HapII CCGG 2 cut(s) 110, 123
Hin1II CATG 2 cut(s) 170, 335
HinfI GANTC 2 cut(s) 203, 524
HpaII CCGG 2 cut(s) 110, 123
HphI GGTGA 4 cut(s) 16, 98, 533, 544
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 3 cut(s) 24, 363, 462
Hpy188III TCNNGA 3 cut(s) 74, 278, 372
Hpy8I GTNNAC 1 cut(s) 292
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 419
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 3 cut(s) 160, 368, 508
HpyF10VI GCNNNNNNNGC 3 cut(s) 322, 384, 483
HpyF3I CTNAG 2 cut(s) 75, 398
HpySE526I ACGT 1 cut(s) 504
Hsp92II CATG 2 cut(s) 170, 335
Ksp22I TGATCA 2 cut(s) 49, 151
Kzo9I GATC 7 cut(s) 19, 49, 60, 151, 181, 328, 457
LguI GCTCTTC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 394
LweI GCATC 2 cut(s) 334, 377
MaeI CTAG 1 cut(s) 372
MaeII ACGT 1 cut(s) 504
MaeIII GTNAC 2 cut(s) 4, 521
MalI GATC 7 cut(s) 21, 51, 62, 153, 183, 330, 459
MboI GATC 7 cut(s) 19, 49, 60, 151, 181, 328, 457
MboII GAAGA 2 cut(s) 128, 503
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 4 cut(s) 37, 102, 494, 604
MlyI GAGTC 1 cut(s) 518
MnlI CCTC 7 cut(s) 117, 163, 382, 405, 425, 462, 509
MspI CCGG 2 cut(s) 110, 123
MspR9I CCNGG 2 cut(s) 438, 561
MvaI CCWGG 2 cut(s) 438, 561
MwoI GCNNNNNNNGC 3 cut(s) 322, 384, 483
NdeI CATATG 1 cut(s) 156
NdeII GATC 7 cut(s) 19, 49, 60, 151, 181, 328, 457
NlaIII CATG 2 cut(s) 170, 335
NlaIV GGNNCC 1 cut(s) 183
NmuCI GTSAC 2 cut(s) 4, 521
PciSI GCTCTTC 1 cut(s) 141
PcsI WCGNNNNNNNCGW 1 cut(s) 28
PfeI GAWTC 1 cut(s) 203
PkrI GCNGC 1 cut(s) 479
PleI GAGTC 1 cut(s) 518
PpsI GAGTC 1 cut(s) 518
Ppu21I YACGTR 1 cut(s) 505
PpuMI RGGWCCY 1 cut(s) 434
Psp5II RGGWCCY 1 cut(s) 434
Psp6I CCWGG 2 cut(s) 436, 559
PspGI CCWGG 2 cut(s) 436, 559
PspN4I GGNNCC 1 cut(s) 183
PspPI GGNCC 1 cut(s) 434
PspPPI RGGWCCY 1 cut(s) 434
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 3 cut(s) 293, 299, 358
RsaNI GTAC 3 cut(s) 292, 298, 357
SapI GCTCTTC 1 cut(s) 141
SatI GCNGC 1 cut(s) 478
Sau3AI GATC 7 cut(s) 19, 49, 60, 151, 181, 328, 457
Sau96I GGNCC 1 cut(s) 434
ScaI AGTACT 2 cut(s) 299, 358
SchI GAGTC 1 cut(s) 518
ScrFI CCNGG 2 cut(s) 438, 561
SduI GDGCHC 1 cut(s) 69
SfaNI GCATC 2 cut(s) 334, 377
SinI GGWCC 1 cut(s) 434
Sse9I AATT 4 cut(s) 37, 102, 494, 604
SsiI CCGC 2 cut(s) 392, 477
SspMI CTAG 1 cut(s) 372
StyD4I CCNGG 2 cut(s) 436, 559
TaaI ACNGT 1 cut(s) 191
TaiI ACGT 1 cut(s) 507
TasI AATT 4 cut(s) 37, 102, 494, 604
TatI WGTACW 2 cut(s) 297, 356
TauI GCSGC 1 cut(s) 480
TfiI GAWTC 1 cut(s) 203
TscAI CASTG 1 cut(s) 136
TseFI GTSAC 2 cut(s) 4, 521
Tsp45I GTSAC 2 cut(s) 4, 521
TspDTI ATGAA 1 cut(s) 216
TspRI CASTG 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 434
XapI RAATTY 4 cut(s) 37, 102, 494, 604
XbaI TCTAGA 1 cut(s) 371
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XspI CTAG 1 cut(s) 372
ZrmI AGTACT 2 cut(s) 299, 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.