Rorug02G0515000

Serine threonine-protein phosphatase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
64614451 .. 64618726
4276 bp
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UTR
Exon/CDS
Intron
Rorug02G0515000.1

Sequence Viewer

Length: 819 bp
ATGAGGAAGAGGGAGAGGGAGAATCCATGTGGGGTTTGTGGCCACTATCACAAATACGAGGAGGGAGAGGTCTGTGGCATATGCGGCCACCGTGTTCCGGCTGTTTCCGAGAAAACGGCGATCCAAGTTAGCGCCTTTCCGTCCGAGATCCTGCCGGAGTTTCTCTACTTGGGCAGCTACGACAACGCCTCTCGCTCCGAGCTTCTCAAGACTCAGGGAATCTCTCGTGTTCTCAACACTGTACCTACTTGTCAAAATCTTTACAAGAACTCTTTCACCTACCATTACCTTCAAGATGACAAAACTTTGCAATTTGAGGATGCAAACCAATTTTTAGAGAAATGTGAGAGGGATAAAGCTCGTGTTTTAGTGCACTGCATGTCAGGGAAAAATAGGTCCCCAGCCATTGTAATAGCTTATTTGATGAAATCGAGAGGATGGAGACTAGCACAGGCTTATCAGTGGGTCAAAGAACGAAGACCAGCTGTTGAATTAACTGAAGCTGTTTATCGGCAACTACAGGAGTATGAGGACAAGATCTTTGGGTCAATTGACAGTACCAATCAAACATTGGCAGCCTTCCCGCCAGTAGCTGCACCTTCATTTGGCTTTGGTTTCCCCAAAGCTAGTGATGGAGTTCCTATCCCTGCATTCAACAATGTGGCCGCTCCCTCCATTTTTGCTAGACCCACCTTAGATATCCCTCCACAGGAGTTTACATTTGGAGCTGGCCAGACTCAAAGTAATATCTCAGGAAGCCCTTTTACTGCCAATCCTCCAAATCCAAATGCTACTGATATTTCTATGGATAGTACTTGA

Protein Analysis

272

Amino Acids

30.3

Weight (kDa)

6.53

Isoelectric Point (pI)

57.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DSPc PF00782 55 - 178 4.2e-27 Dual specificity phosphatase, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000121)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 668
AciI CCGC 3 cut(s) 84, 584, 666
AclWI GGATC 2 cut(s) 115, 142
AcoI YGGCCR 4 cut(s) 40, 85, 663, 730
AcuI CTGAAG 1 cut(s) 519
AfaI GTAC 3 cut(s) 243, 559, 814
AfiI CCNNNNNNNGG 3 cut(s) 97, 605, 709
AgsI TTSAA 3 cut(s) 293, 491, 655
AluBI AGCT 9 cut(s) 177, 202, 359, 416, 485, 503, 593, 626, 728
AluI AGCT 9 cut(s) 177, 202, 359, 416, 485, 503, 593, 626, 728
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 1 cut(s) 436
Alw44I GTGCAC 1 cut(s) 371
AlwI GGATC 2 cut(s) 115, 142
AlwNI CAGNNNCTG 1 cut(s) 593
AoxI GGCC 4 cut(s) 40, 85, 663, 730
ApaLI GTGCAC 1 cut(s) 371
ApeKI GCWGC 3 cut(s) 174, 575, 593
ArsI GACNNNNNNTTYG 2 cut(s) 524, 556
Asp700I GAANNNNTTC 1 cut(s) 272
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 396
AsuHPI GGTGA 1 cut(s) 268
AvaII GGWCC 1 cut(s) 396
BaeGI GKGCMC 1 cut(s) 375
BalI TGGCCA 2 cut(s) 42, 732
BarI GAAGNNNNNNTAC 2 cut(s) 748, 780
BauI CACGAG 2 cut(s) 225, 360
BbsI GAAGAC 1 cut(s) 484
Bbv12I GWGCWC 1 cut(s) 375
BbvI GCAGC 3 cut(s) 186, 580, 587
BccI CCATC 2 cut(s) 432, 626
BceAI ACGGC 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 436
BfaI CTAG 3 cut(s) 446, 627, 684
BfmI CTRYAG 1 cut(s) 518
BfoI RGCGCY 1 cut(s) 135
BglII AGATCT 1 cut(s) 537
BisI GCNGC 5 cut(s) 85, 175, 576, 594, 666
BlsI GCNGC 5 cut(s) 86, 176, 577, 595, 667
BmcAI AGTACT 1 cut(s) 814
Bme18I GGWCC 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 396
BmiI GGNNCC 1 cut(s) 398
BmsI GCATC 1 cut(s) 310
BpiI GAAGAC 1 cut(s) 484
BpuEI CTTGAG 1 cut(s) 191
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 605, 709
Bse1I ACTGG 1 cut(s) 587
BseGI GGATG 2 cut(s) 325, 443
BseLI CCNNNNNNNGG 3 cut(s) 97, 605, 709
BseMII CTCAG 2 cut(s) 227, 765
BseNI ACTGG 1 cut(s) 587
BseRI GAGGAG 1 cut(s) 74
BseSI GKGCMC 1 cut(s) 375
BseXI GCAGC 3 cut(s) 186, 580, 587
BseYI CCCAGC 1 cut(s) 400
BsgI GTGCAG 1 cut(s) 579
BshFI GGCC 4 cut(s) 42, 87, 665, 732
BsiHKAI GWGCWC 1 cut(s) 375
BsiSI CCGG 2 cut(s) 98, 155
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 3 cut(s) 97, 605, 709
BsmAI GTCTC 1 cut(s) 436
BsmFI GGGAC 1 cut(s) 382
BsmI GAATGC 1 cut(s) 650
BsnI GGCC 4 cut(s) 42, 87, 665, 732
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 3 cut(s) 120, 147, 537
BspACI CCGC 3 cut(s) 84, 584, 666
BspANI GGCC 4 cut(s) 42, 87, 665, 732
BspCNI CTCAG 2 cut(s) 226, 764
BspLI GGNNCC 1 cut(s) 398
BspPI GGATC 2 cut(s) 115, 142
BsrBI CCGCTC 1 cut(s) 668
BsrI ACTGG 1 cut(s) 587
BssMI GATC 3 cut(s) 120, 147, 537
BssSI CACGAG 2 cut(s) 225, 360
Bst2BI CACGAG 2 cut(s) 225, 360
Bst4CI ACNGT 3 cut(s) 92, 241, 557
Bst6I CTCTTC 1 cut(s) 2
BstC8I GCNNGC 1 cut(s) 730
BstDEI CTNAG 3 cut(s) 213, 694, 751
BstF5I GGATG 2 cut(s) 325, 443
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 3 cut(s) 123, 150, 540
BstMAI GTCTC 1 cut(s) 436
BstMBI GATC 3 cut(s) 120, 147, 537
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstNSI RCATGY 1 cut(s) 382
BstSFI CTRYAG 1 cut(s) 518
BstSLI GKGCMC 1 cut(s) 375
BstV1I GCAGC 3 cut(s) 186, 580, 587
BstV2I GAAGAC 1 cut(s) 484
BstX2I RGATCY 2 cut(s) 147, 537
BstYI RGATCY 2 cut(s) 147, 537
BsuRI GGCC 4 cut(s) 42, 87, 665, 732
BtsCI GGATG 2 cut(s) 325, 443
BtsI GCAGTG 1 cut(s) 373
BtsIMutI CAGTG 3 cut(s) 237, 373, 467
Cac8I GCNNGC 1 cut(s) 730
CaiI CAGNNNCTG 1 cut(s) 593
CfoI GCGC 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 396
Csp6I GTAC 3 cut(s) 242, 558, 813
CviAII CATG 2 cut(s) 27, 379
CviQI GTAC 3 cut(s) 242, 558, 813
DdeI CTNAG 3 cut(s) 213, 694, 751
DpnI GATC 3 cut(s) 122, 149, 539
DpnII GATC 3 cut(s) 120, 147, 537
EaeI YGGCCR 4 cut(s) 40, 85, 663, 730
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
Eco32I GATATC 1 cut(s) 700
Eco47I GGWCC 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 519
EcoO109I RGGNCCY 1 cut(s) 396
EcoRV GATATC 1 cut(s) 700
FaeI CATG 2 cut(s) 30, 382
FaiI YATR 6 cut(s) 28, 80, 82, 380, 528, 806
FaqI GGGAC 1 cut(s) 382
FatI CATG 2 cut(s) 26, 378
FauI CCCGC 1 cut(s) 591
FauNDI CATATG 1 cut(s) 80
Fnu4HI GCNGC 5 cut(s) 85, 175, 576, 594, 666
FokI GGATG 2 cut(s) 332, 450
Fsp4HI GCNGC 5 cut(s) 85, 175, 576, 594, 666
FspBI CTAG 3 cut(s) 446, 627, 684
GlaI GCGC 1 cut(s) 133
GluI GCNGC 5 cut(s) 85, 175, 576, 594, 666
GsaI CCCAGC 1 cut(s) 404
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 4 cut(s) 42, 87, 665, 732
HapII CCGG 2 cut(s) 98, 155
HhaI GCGC 1 cut(s) 134
Hin1II CATG 2 cut(s) 30, 382
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HinfI GANTC 4 cut(s) 22, 211, 219, 736
HpaII CCGG 2 cut(s) 98, 155
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 2 cut(s) 373, 717
Hpy188I TCNGA 3 cut(s) 109, 145, 199
Hpy188III TCNNGA 4 cut(s) 208, 293, 432, 753
Hpy8I GTNNAC 2 cut(s) 373, 717
HpyAV CCTTC 3 cut(s) 299, 589, 609
HpyCH4III ACNGT 3 cut(s) 92, 241, 557
HpyCH4V TGCA 6 cut(s) 310, 323, 373, 378, 596, 650
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpyF3I CTNAG 3 cut(s) 213, 694, 751
Hsp92II CATG 2 cut(s) 30, 382
HspAI GCGC 1 cut(s) 132
Kzo9I GATC 3 cut(s) 120, 147, 537
LmnI GCTCC 3 cut(s) 200, 673, 725
Lsp1109I GCAGC 3 cut(s) 186, 580, 587
LweI GCATC 1 cut(s) 310
MaeI CTAG 3 cut(s) 446, 627, 684
MalI GATC 3 cut(s) 122, 149, 539
MbiI CCGCTC 1 cut(s) 668
MboI GATC 3 cut(s) 120, 147, 537
MboII GAAGA 2 cut(s) 19, 489
MfeI CAATTG 1 cut(s) 549
MflI RGATCY 2 cut(s) 147, 537
MhlI GDGCHC 1 cut(s) 375
MlsI TGGCCA 2 cut(s) 42, 732
MluCI AATT 4 cut(s) 311, 329, 491, 549
MluNI TGGCCA 2 cut(s) 42, 732
MlyI GAGTC 2 cut(s) 205, 730
Mox20I TGGCCA 2 cut(s) 42, 732
MroXI GAANNNNTTC 1 cut(s) 272
MscI TGGCCA 2 cut(s) 42, 732
MseI TTAA 1 cut(s) 494
Msp20I TGGCCA 2 cut(s) 42, 732
MspA1I CMGCKG 1 cut(s) 485
MspI CCGG 2 cut(s) 98, 155
MunI CAATTG 1 cut(s) 549
Mva1269I GAATGC 1 cut(s) 650
MwoI GCNNNNNNNGC 1 cut(s) 84
NdeI CATATG 1 cut(s) 80
NdeII GATC 3 cut(s) 120, 147, 537
NlaIII CATG 2 cut(s) 30, 382
NlaIV GGNNCC 1 cut(s) 398
NspI RCATGY 1 cut(s) 382
PctI GAATGC 1 cut(s) 650
PdmI GAANNNNTTC 1 cut(s) 272
PfeI GAWTC 2 cut(s) 22, 219
PkrI GCNGC 5 cut(s) 86, 176, 577, 595, 667
PleI GAGTC 2 cut(s) 205, 730
PpsI GAGTC 2 cut(s) 205, 730
PpuMI RGGWCCY 1 cut(s) 396
Psp5II RGGWCCY 1 cut(s) 396
PspFI CCCAGC 1 cut(s) 400
PspN4I GGNNCC 1 cut(s) 398
PspPI GGNCC 1 cut(s) 396
PspPPI RGGWCCY 1 cut(s) 396
PstNI CAGNNNCTG 1 cut(s) 593
PsuI RGATCY 2 cut(s) 147, 537
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 3 cut(s) 243, 559, 814
RsaNI GTAC 3 cut(s) 242, 558, 813
SaqAI TTAA 1 cut(s) 494
SatI GCNGC 5 cut(s) 85, 175, 576, 594, 666
Sau3AI GATC 3 cut(s) 120, 147, 537
Sau96I GGNCC 1 cut(s) 396
ScaI AGTACT 1 cut(s) 814
SchI GAGTC 2 cut(s) 205, 730
SduI GDGCHC 1 cut(s) 375
SfaNI GCATC 1 cut(s) 310
SfcI CTRYAG 1 cut(s) 518
SinI GGWCC 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 4 cut(s) 311, 329, 491, 549
SsiI CCGC 3 cut(s) 84, 584, 666
SspMI CTAG 3 cut(s) 446, 627, 684
TaaI ACNGT 3 cut(s) 92, 241, 557
TaqI TCGA 1 cut(s) 431
TasI AATT 4 cut(s) 311, 329, 491, 549
TatI WGTACW 1 cut(s) 812
TauI GCSGC 2 cut(s) 87, 668
TfiI GAWTC 2 cut(s) 22, 219
Tru1I TTAA 1 cut(s) 494
Tru9I TTAA 1 cut(s) 494
TscAI CASTG 3 cut(s) 244, 380, 467
TseI GCWGC 3 cut(s) 174, 575, 593
TspDTI ATGAA 2 cut(s) 440, 591
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 3 cut(s) 244, 380, 467
VneI GTGCAC 1 cut(s) 371
VpaK11BI GGWCC 1 cut(s) 396
XceI RCATGY 1 cut(s) 382
XcmI CCANNNNNNNNNTGG 1 cut(s) 568
XmnI GAANNNNTTC 1 cut(s) 272
XspI CTAG 3 cut(s) 446, 627, 684
ZrmI AGTACT 1 cut(s) 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.