Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Reverse (-)

26462502 .. 26465211

Gene Structure 2710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G021810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2679 bp

ATGATCATTGCCCCCTTCCGATCAGTGAGTCTCAAAGACAACACAACCAGACATTATCTATATGCCTTTCTTTTTTTTGAGAGAACATTATCTATATACCTAAGCCTTCACAAGCCTTCATCCGGGCAAAAAAACTCCCACACAGTTATTACAATGAAGCCAGTTCTCATCCCTCTCTACCTTTCTGTGTTTCAATACATCATCGTCCAACTGCTGGCCGGTCAGTCGCTACCTATATACACTCCTACTGATAATATCACCCTTAACTGTGGCTCATCCGGTGACAATGTCAGTGACTATGATTCTCGAAATTGGAGTGGAGATATCAACTCAAAGCTTTTCCCTATAGAAGTTGGTCGCGCATCCAAAGCTTTGAAAGCACTACCATCGTCCTCCTCGAGAGGTACCCAAGGCTTTCTTACTCGGAATTCACTTATCCATTTCCCGTCAGTCCCGGGCCAGAAGTTCATTCGCTTATACTTCTACCCAGCTTCATACAGCGCCGAGTTCTCCCTCTCCGAGTCTCTTTTCTCTGTCAAAGTCGGTGCCTTCACTCTTCTCAAAGACTTTAACGCTTCTGCAAATGCCGATGCTGATCAATCTGAGACGGTGCTCAAAGAATTTTGTACTAACGTTGAGCGAGAACAACAGATCCTTAACATCACATTCACTCCCAGCAAAGAGGCATATGCTTTCATCAACGGGATTGAAATATGGTCGATGCCAACAAATCTTTATTACTCTACTGCTAACTCTCTCAGCAGCAGAAACTCATATCCAGTCAAAAACAGCACAGCTCTACAGATGCTATACCGAATCAACGTTGGCGGAAGCATAGTTTCGCCCAAGGAAGACACCGGCTTGTACCGGACTTGGGATGCCACAGACCTCCTTTATTTGGATGATCAAAGTACAAGACTCAGTGTTCTTCAACAGAACAGGACTGTTGAACTCAAATTTATCAAAATACCAGAGTACATAGCCCCAAAAGTAGTTTACCAAACAGGTCGGTCAATGGGGATGAACAAAACCATCAACGAGAATTACAACCTCACCTGGTTATTTCCGGTAGACTCTAACTTCTCCTACCTGATTAGATTGCATTTTTGTGAGTTTGAGTCTGAAATTACCAAGAGCGGAAACCGGACGTTTATAATTTACATAGCCAATCAAACTGCTGAACAAGGAGCAGACATAATTCAATGGAGTGGTGGAAATGGGATACCGATATACAGAGACTACATCTTGCTCATGTCTGACCCTGGAAGCCAGAAGAGAGTTAACCTCTCTATTGCGTTGCAAGTTTCCCCACTAGATTGGTTGAGTACATATACCGATGCATTGATGAATGGGATCGAAATCTTCAAATTATTCAACCCAGATAGCAATAATGTCCCTCTGAAACGCAACCCACAGCAAACTTCACACTACAAGCTGACAACACAAGTACAAATCATCATTGCTGCTGTTGTGTCCAGCATACTTGTGTTTTTCGTCCTCGGATTTTTGGTCATCAAGCGACGATGGAAAGCTAAGGACACTGACTCCAGCCACAGGATAACGAGGTCAACCATGATCCCAGAGTCACCTTTACCTTCTTATTTGTCTCGTTACTTTTCACTGGCAGAGATCAAGACTGCCACCAAAAACTTCAATGATACTTTCATTATTGGAGCTGGAGGATTTGGCAATGTGTACAAAGGATGTATCGAAGGTGGAGTCACTCCAGTTGCAATCAAAAGACTGAAACCAGAGTCATCCCAGGGTGCCCATGAGTTTAAGACGGAAATCGAGATGCTCTCTCAACTCCGTCATCGTCATTTGGTTTCGCTCATTGGATATTGTGCTGATAAAGGTGAGATGATCTTAGTGTACGAGTATATGTCCCGTGGAACACTTCGTGACCATCTCTACCACAATGAGCAACCGCCTCTTTCTTGGGAGAAACGGCTTCAGATTTGTATTGGCACAGCCCGTGGATTGCAATACCTCCACAGTGGTGCGCAGGGCACCATCATACACCGTGATGTAAAGAGCACAAACATCTTATTGGACGACAAATGGGTGGCCAAAGTTTCAGATTTTGGGTTGTCCAAGGGCACGACTAACATGTCCAAATCCCACATCAGCACGGTGGTGAAAGGTAGTTTTGGGTATCTGGACCCAGAGTACTACCGCCGACAACGTCTGACTGAGAAGTCAGACGTGTACTCACTTGGTGTAGTGTTGTTTGAGGTATTGTGTGCAAGGCCAGCAGTGATGCAGGCAGAAGAGCTGAAGCAGGTCAGCCTGGCTGAGTGGGCCAAGAGCTGTCATCAGAATGGGGAAATTGATCAAATCATTGATCCAAGTTTAAGAGGTAAGATCGCAGCCGAGTGCCTGAATAAGTTCACCGAAATAGCTATCAGTTGCATGCATGACAATGGAACAGAACGGCCGTCCATGACTGATGTTGTTAGGGGGCTTGAACTTGCATTGCAGCTTCAGCAATGTGCAGAAGGGAATACCAACTGCACTGAAAGGATTGTTGAAACTGAACCAAGCAGTAATGAGCAAAGACTTGCCACCAACGATTCCATTAAATGTATATCAGCAACTATCTTCTCTGAGATAAACGACCCAAGTGGCGATGATGAGCATCATTTCAAAGAAATGAAAGCAATCTGGACAGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

892

Amino Acids

100.39

Weight (kDa)

7.26

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	154 - 456	2e-27	Malectin-like domain
Malectin	PF11721	297 - 415	6.4e-08	Malectin domain
Pkinase	PF00069	556 - 819	1.3e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	557 - 821	8.5e-51	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1154
AasI	GACNNNNNNGTC	2 cut(s)	2110, 2197
Acc16I	TGCGCA	1 cut(s)	2004
Acc36I	ACCTGC	1 cut(s)	2272
Acc65I	GGTACC	1 cut(s)	404
AccB1I	GGYRCC	4 cut(s)	404, 545, 1766, 2009
AccB7I	CCANNNNNTGG	1 cut(s)	214
AccBSI	CCGCTC	1 cut(s)	1137
AccI	GTMKAC	1 cut(s)	1071
AccII	CGCG	1 cut(s)	360
AciI	CCGC	4 cut(s)	828, 1137, 1928, 2176
AclI	AACGTT	2 cut(s)	633, 822
AclWI	GGATC	4 cut(s)	646, 1361, 1570, 2339
AcoI	YGGCCR	3 cut(s)	216, 2067, 2435
AcsI	RAATTY	3 cut(s)	427, 620, 956
AcuI	CTGAAG	3 cut(s)	1937, 2297, 2468
AdeI	CACNNNGTG	2 cut(s)	1901, 2219
AfiI	CCNNNNNNNGG	5 cut(s)	122, 214, 874, 898, 1554
AflIII	ACRYGT	2 cut(s)	2109, 2205
AjiI	CACGTC	1 cut(s)	2206
AjnI	CCWGG	4 cut(s)	1055, 1261, 1761, 2289
AleI	CACNNNNGTG	2 cut(s)	1998, 2135
AloI	GAACNNNNNNTCC	2 cut(s)	636, 668
Alw21I	GWGCWC	2 cut(s)	615, 2039
Alw26I	GTCTC	5 cut(s)	35, 528, 599, 1230, 1611
AlwI	GGATC	4 cut(s)	646, 1361, 1570, 2339
Ama87I	CYCGRG	2 cut(s)	397, 454
AoxI	GGCC	6 cut(s)	216, 457, 2067, 2249, 2301, 2435
ApeKI	GCWGC	4 cut(s)	762, 1463, 2369, 2479
ApoI	RAATTY	3 cut(s)	427, 620, 956
ArsI	GACNNNNNNTTYG	2 cut(s)	1704, 1736
Asp700I	GAANNNNTTC	1 cut(s)	2387
Asp718I	GGTACC	1 cut(s)	404
AspLEI	GCGC	3 cut(s)	362, 503, 2005
AspS9I	GGNCC	3 cut(s)	457, 2161, 2301
AsuC2I	CCSGG	3 cut(s)	124, 455, 456
AsuHPI	GGTGA	7 cut(s)	250, 293, 1045, 1578, 1868, 2149, 2383
AvaI	CYCGRG	2 cut(s)	397, 454
AvaII	GGWCC	1 cut(s)	2161
BaeGI	GKGCMC	3 cut(s)	1771, 2012, 2102
BalI	TGGCCA	1 cut(s)	2069
BanI	GGYRCC	4 cut(s)	404, 545, 1766, 2009
BbsI	GAAGAC	1 cut(s)	858
Bbv12I	GWGCWC	2 cut(s)	615, 2039
BbvI	GCAGC	4 cut(s)	774, 1450, 2381, 2491
BccI	CCATC	5 cut(s)	394, 1040, 1518, 1914, 2021
BceAI	ACGGC	3 cut(s)	1964, 2422, 2450
BcgI	CGANNNNNNTGC	2 cut(s)	369, 403
BciT130I	CCWGG	4 cut(s)	1057, 1263, 1763, 2291
BciVI	GTATCC	1 cut(s)	1215
BclI	TGATCA	4 cut(s)	3, 595, 904, 2332
BcnI	CCSGG	3 cut(s)	124, 455, 456
BcoDI	GTCTC	5 cut(s)	35, 528, 599, 1230, 1611
BfaI	CTAG	1 cut(s)	1313
BfmI	CTRYAG	2 cut(s)	345, 800
BfoI	RGCGCY	1 cut(s)	504
BfuAI	ACCTGC	1 cut(s)	2272
BfuI	GTATCC	1 cut(s)	1215
BisI	GCNGC	4 cut(s)	763, 1464, 2370, 2480
BlsI	GCNGC	4 cut(s)	764, 1465, 2371, 2481
BmcAI	AGTACT	1 cut(s)	2171
Bme1390I	CCNGG	7 cut(s)	124, 455, 456, 1057, 1263, 1763, 2291
Bme18I	GGWCC	1 cut(s)	2161
BmeT110I	CYCGRG	2 cut(s)	397, 454
BmgBI	CACGTC	1 cut(s)	2206
BmgT120I	GGNCC	3 cut(s)	457, 2161, 2301
BmiI	GGNNCC	5 cut(s)	406, 547, 1768, 2011, 2163
BmrFI	CCNGG	7 cut(s)	124, 455, 456, 1057, 1263, 1763, 2291
BmsI	GCATC	9 cut(s)	371, 580, 711, 795, 868, 1327, 1785, 2250, 2647
BpiI	GAAGAC	1 cut(s)	858
BplI	GAGNNNNNCTC	4 cut(s)	1269, 1301, 1784, 1816
BpmI	CTGGAG	3 cut(s)	1531, 1698, 1710
Bpu10I	CCTNAGC	2 cut(s)	101, 1533
BpuMI	CCSGG	3 cut(s)	124, 455, 456
BsaBI	GATNNNNATC	3 cut(s)	594, 1358, 2637
BsaWI	WCCGGW	4 cut(s)	278, 867, 1066, 1143
BsaXI	ACNNNNNCTCC	4 cut(s)	655, 685, 1529, 1559
Bsc4I	CCNNNNNNNGG	5 cut(s)	122, 214, 874, 898, 1554
Bse118I	RCCGGY	2 cut(s)	218, 857
Bse1I	ACTGG	4 cut(s)	161, 779, 1626, 1727
Bse3DI	GCAATG	5 cut(s)	6, 1458, 1696, 2474, 2495
Bse8I	GATNNNNATC	3 cut(s)	594, 1358, 2637
BseBI	CCWGG	4 cut(s)	1057, 1263, 1763, 2291
BseGI	GGATG	9 cut(s)	119, 168, 275, 362, 883, 907, 1026, 1709, 1757
BseJI	GATNNNNATC	3 cut(s)	594, 1358, 2637
BseLI	CCNNNNNNNGG	5 cut(s)	122, 214, 874, 898, 1554
BseMI	GCAATG	5 cut(s)	6, 1458, 1696, 2474, 2495
BseMII	CTCAG	6 cut(s)	594, 772, 934, 2184, 2286, 2598
BseNI	ACTGG	4 cut(s)	161, 779, 1626, 1727
BseRI	GAGGAG	1 cut(s)	385
BseSI	GKGCMC	3 cut(s)	1771, 2012, 2102
BseX3I	CGGCCG	1 cut(s)	2435
BseXI	GCAGC	4 cut(s)	774, 1450, 2381, 2491
BseYI	CCCAGC	2 cut(s)	487, 674
BsgI	GTGCAG	2 cut(s)	2497, 2514
Bsh1236I	CGCG	1 cut(s)	360
Bsh1285I	CGRYCG	1 cut(s)	2438
BshFI	GGCC	6 cut(s)	218, 459, 2069, 2251, 2303, 2437
BshNI	GGYRCC	4 cut(s)	404, 545, 1766, 2009
BsiEI	CGRYCG	1 cut(s)	2438
BsiHKAI	GWGCWC	2 cut(s)	615, 2039
BsiHKCI	CYCGRG	2 cut(s)	397, 454
BsiSI	CCGG	8 cut(s)	123, 219, 279, 455, 858, 868, 1067, 1144
BslFI	GGGAC	3 cut(s)	437, 1379, 1870
BslI	CCNNNNNNNGG	5 cut(s)	122, 214, 874, 898, 1554
BsmAI	GTCTC	5 cut(s)	35, 528, 599, 1230, 1611
BsmBI	CGTCTC	1 cut(s)	599
BsmFI	GGGAC	3 cut(s)	437, 1379, 1870
BsnI	GGCC	6 cut(s)	218, 459, 2069, 2251, 2303, 2437
BsoBI	CYCGRG	2 cut(s)	397, 454
Bsp1286I	GDGCHC	5 cut(s)	615, 1771, 2012, 2039, 2102
Bsp1407I	TGTACA	1 cut(s)	1695
BspACI	CCGC	4 cut(s)	828, 1137, 1928, 2176
BspANI	GGCC	6 cut(s)	218, 459, 2069, 2251, 2303, 2437
BspCNI	CTCAG	6 cut(s)	595, 771, 933, 2185, 2287, 2599
BspFNI	CGCG	1 cut(s)	360
BspHI	TCATGA	1 cut(s)	2675
BspLI	GGNNCC	5 cut(s)	406, 547, 1768, 2011, 2163
BspMI	ACCTGC	1 cut(s)	2272
BspPI	GGATC	4 cut(s)	646, 1361, 1570, 2339
BspQI	GCTCTTC	1 cut(s)	2265
BspT107I	GGYRCC	4 cut(s)	404, 545, 1766, 2009
BsrBI	CCGCTC	1 cut(s)	1137
BsrDI	GCAATG	5 cut(s)	6, 1458, 1696, 2474, 2495
BsrFI	RCCGGY	2 cut(s)	218, 857
BsrGI	TGTACA	1 cut(s)	1695
BsrI	ACTGG	4 cut(s)	161, 779, 1626, 1727
BssAI	RCCGGY	2 cut(s)	218, 857
BssT1I	CCWWGG	3 cut(s)	409, 846, 2094
Bst2UI	CCWGG	4 cut(s)	1057, 1263, 1763, 2291
Bst4CI	ACNGT	7 cut(s)	145, 269, 610, 946, 1997, 2024, 2134
Bst6I	CTCTTC	3 cut(s)	561, 1268, 2265
BstAUI	TGTACA	1 cut(s)	1695
BstC8I	GCNNGC	4 cut(s)	216, 2253, 2265, 2414
BstDEI	CTNAG	9 cut(s)	101, 603, 758, 920, 1533, 1867, 2193, 2295, 2607
BstDSI	CCRYGG	2 cut(s)	1888, 1975
BstF5I	GGATG	9 cut(s)	119, 168, 275, 362, 883, 907, 1026, 1709, 1757
BstFNI	CGCG	1 cut(s)	360
BstH2I	RGCGCY	1 cut(s)	504
BstHHI	GCGC	3 cut(s)	362, 503, 2005
BstMAI	GTCTC	5 cut(s)	35, 528, 599, 1230, 1611
BstMCI	CGRYCG	1 cut(s)	2438
BstMWI	GCNNNNNNNGC	5 cut(s)	368, 377, 2252, 2300, 2485
BstNI	CCWGG	4 cut(s)	1057, 1263, 1763, 2291
BstNSI	RCATGY	2 cut(s)	2113, 2416
BstSCI	CCNGG	7 cut(s)	122, 453, 454, 1055, 1261, 1761, 2289
BstSFI	CTRYAG	2 cut(s)	345, 800
BstSLI	GKGCMC	3 cut(s)	1771, 2012, 2102
BstUI	CGCG	1 cut(s)	360
BstV1I	GCAGC	4 cut(s)	774, 1450, 2381, 2491
BstV2I	GAAGAC	1 cut(s)	858
BstX2I	RGATCY	1 cut(s)	651
BstXI	CCANNNNNNTGG	1 cut(s)	1317
BstYI	RGATCY	1 cut(s)	651
BstZI	CGGCCG	1 cut(s)	2435
BsuI	GTATCC	1 cut(s)	1215
BsuRI	GGCC	6 cut(s)	218, 459, 2069, 2251, 2303, 2437
BtgI	CCRYGG	2 cut(s)	1888, 1975
BtgZI	GCGATG	1 cut(s)	2643
BtrI	CACGTC	1 cut(s)	2206
BtsCI	GGATG	9 cut(s)	119, 168, 275, 362, 883, 907, 1026, 1709, 1757
BtsI	GCAGTG	1 cut(s)	2262
BtsIMutI	CAGTG	8 cut(s)	30, 298, 928, 1539, 1619, 2002, 2262, 2514
BveI	ACCTGC	1 cut(s)	2272
Cac8I	GCNNGC	4 cut(s)	216, 2253, 2265, 2414
CciI	TCATGA	1 cut(s)	2675
CfoI	GCGC	3 cut(s)	362, 503, 2005
Cfr10I	RCCGGY	2 cut(s)	218, 857
Cfr13I	GGNCC	3 cut(s)	457, 2161, 2301
Cfr9I	CCCGGG	1 cut(s)	454
CsiI	ACCWGGT	1 cut(s)	1055
CviAII	CATG	8 cut(s)	1252, 1573, 1772, 2110, 2413, 2417, 2443, 2676
DdeI	CTNAG	9 cut(s)	101, 603, 758, 920, 1533, 1867, 2193, 2295, 2607
DraIII	CACNNNGTG	2 cut(s)	1901, 2219
DrdI	GACNNNNNNGTC	2 cut(s)	2110, 2197
DseDI	GACNNNNNNGTC	2 cut(s)	2110, 2197
EaeI	YGGCCR	3 cut(s)	216, 2067, 2435
EagI	CGGCCG	1 cut(s)	2435
Eam1104I	CTCTTC	3 cut(s)	561, 1268, 2265
EarI	CTCTTC	3 cut(s)	561, 1268, 2265
EciI	GGCGGA	1 cut(s)	843
EclXI	CGGCCG	1 cut(s)	2435
Eco130I	CCWWGG	3 cut(s)	409, 846, 2094
Eco32I	GATATC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	2161
Eco52I	CGGCCG	1 cut(s)	2435
Eco57I	CTGAAG	3 cut(s)	1937, 2297, 2468
Eco88I	CYCGRG	2 cut(s)	397, 454
EcoRI	GAATTC	1 cut(s)	427
EcoRII	CCWGG	4 cut(s)	1055, 1261, 1761, 2289
EcoRV	GATATC	1 cut(s)	325
EcoT14I	CCWWGG	3 cut(s)	409, 846, 2094
EcoT22I	ATGCAT	2 cut(s)	1342, 2418
ErhI	CCWWGG	3 cut(s)	409, 846, 2094
Esp3I	CGTCTC	1 cut(s)	599
FaeI	CATG	8 cut(s)	1255, 1576, 1775, 2113, 2416, 2420, 2446, 2679
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FaqI	GGGAC	3 cut(s)	437, 1379, 1870
FatI	CATG	8 cut(s)	1251, 1572, 1771, 2109, 2412, 2416, 2442, 2675
FauNDI	CATATG	1 cut(s)	688
FbaI	TGATCA	4 cut(s)	3, 595, 904, 2332
FblI	GTMKAC	1 cut(s)	1071
Fnu4HI	GCNGC	4 cut(s)	763, 1464, 2370, 2480
FokI	GGATG	9 cut(s)	106, 155, 262, 349, 890, 914, 1033, 1716, 1744
Fsp4HI	GCNGC	4 cut(s)	763, 1464, 2370, 2480
FspBI	CTAG	1 cut(s)	1313
FspI	TGCGCA	1 cut(s)	2004
GlaI	GCGC	3 cut(s)	361, 502, 2004
GluI	GCNGC	4 cut(s)	763, 1464, 2370, 2480
GsaI	CCCAGC	2 cut(s)	491, 678
GsuI	CTGGAG	3 cut(s)	1531, 1698, 1710
HaeII	RGCGCY	1 cut(s)	504
HaeIII	GGCC	6 cut(s)	218, 459, 2069, 2251, 2303, 2437
HapII	CCGG	8 cut(s)	123, 219, 279, 455, 858, 868, 1067, 1144
HhaI	GCGC	3 cut(s)	362, 503, 2005
Hin1II	CATG	8 cut(s)	1255, 1576, 1775, 2113, 2416, 2420, 2446, 2679
Hin6I	GCGC	3 cut(s)	360, 501, 2003
HinP1I	GCGC	3 cut(s)	360, 501, 2003
HincII	GTYRAC	2 cut(s)	1282, 1569
HindII	GTYRAC	2 cut(s)	1282, 1569
HindIII	AAGCTT	2 cut(s)	335, 369
HpaI	GTTAAC	1 cut(s)	1282
HpaII	CCGG	8 cut(s)	123, 219, 279, 455, 858, 868, 1067, 1144
HphI	GGTGA	7 cut(s)	250, 293, 1045, 1578, 1868, 2149, 2383
Hpy166II	GTNNAC	8 cut(s)	997, 1072, 1282, 1569, 1696, 1873, 2209, 2391
Hpy188III	TCNNGA	8 cut(s)	306, 399, 1633, 1792, 1901, 2159, 2665, 2676
Hpy8I	GTNNAC	8 cut(s)	997, 1072, 1282, 1569, 1696, 1873, 2209, 2391
Hpy99I	CGWCG	1 cut(s)	1524
HpyAV	CCTTC	7 cut(s)	25, 116, 126, 559, 1605, 1706, 2492
HpyCH4III	ACNGT	7 cut(s)	145, 269, 610, 946, 1997, 2024, 2134
HpyCH4IV	ACGT	5 cut(s)	633, 822, 1148, 2185, 2205
HpyF10VI	GCNNNNNNNGC	5 cut(s)	368, 377, 2252, 2300, 2485
HpyF3I	CTNAG	9 cut(s)	101, 603, 758, 920, 1533, 1867, 2193, 2295, 2607
HpySE526I	ACGT	5 cut(s)	633, 822, 1148, 2185, 2205
Hsp92II	CATG	8 cut(s)	1255, 1576, 1775, 2113, 2416, 2420, 2446, 2679
HspAI	GCGC	3 cut(s)	360, 501, 2003
KpnI	GGTACC	1 cut(s)	408
Ksp22I	TGATCA	4 cut(s)	3, 595, 904, 2332
KspAI	GTTAAC	1 cut(s)	1282
LguI	GCTCTTC	1 cut(s)	2265
LmnI	GCTCC	2 cut(s)	1187, 1673
Lsp1109I	GCAGC	4 cut(s)	774, 1450, 2381, 2491
LweI	GCATC	9 cut(s)	371, 580, 711, 795, 868, 1327, 1785, 2250, 2647
MabI	ACCWGGT	1 cut(s)	1055
MaeI	CTAG	1 cut(s)	1313
MaeII	ACGT	5 cut(s)	633, 822, 1148, 2185, 2205
MaeIII	GTNAC	6 cut(s)	281, 293, 1584, 1610, 1720, 1901
MbiI	CCGCTC	1 cut(s)	1137
MboII	GAAGA	7 cut(s)	548, 863, 920, 1285, 1354, 2282, 2593
MflI	RGATCY	1 cut(s)	651
MhlI	GDGCHC	5 cut(s)	615, 1771, 2012, 2039, 2102
MlsI	TGGCCA	1 cut(s)	2069
MluNI	TGGCCA	1 cut(s)	2069
MlyI	GAGTC	9 cut(s)	37, 530, 912, 1067, 1127, 1538, 1592, 1728, 1763
MmeI	TCCRAC	1 cut(s)	232
Mox20I	TGGCCA	1 cut(s)	2069
Mph1103I	ATGCAT	2 cut(s)	1342, 2418
MroXI	GAANNNNTTC	1 cut(s)	2387
MscI	TGGCCA	1 cut(s)	2069
MseI	TTAA	7 cut(s)	264, 570, 657, 1281, 1779, 2354, 2580
MslI	CAYNNNNRTG	7 cut(s)	1107, 1484, 1998, 2025, 2135, 2319, 2421
Msp20I	TGGCCA	1 cut(s)	2069
MspI	CCGG	8 cut(s)	123, 219, 279, 455, 858, 868, 1067, 1144
MspR9I	CCNGG	7 cut(s)	124, 455, 456, 1057, 1263, 1763, 2291
MvaI	CCWGG	4 cut(s)	1057, 1263, 1763, 2291
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	5 cut(s)	368, 377, 2252, 2300, 2485
NciI	CCSGG	3 cut(s)	124, 455, 456
NdeI	CATATG	1 cut(s)	688
NlaIII	CATG	8 cut(s)	1255, 1576, 1775, 2113, 2416, 2420, 2446, 2679
NlaIV	GGNNCC	5 cut(s)	406, 547, 1768, 2011, 2163
NmeAIII	GCCGAG	2 cut(s)	529, 2398
NmuCI	GTSAC	5 cut(s)	281, 293, 1584, 1720, 1901
NsbI	TGCGCA	1 cut(s)	2004
NsiI	ATGCAT	2 cut(s)	1342, 2418
NspI	RCATGY	2 cut(s)	2113, 2416
OliI	CACNNNNGTG	2 cut(s)	1998, 2135
PaeI	GCATGC	1 cut(s)	2416
PaeR7I	CTCGAG	1 cut(s)	397
PagI	TCATGA	1 cut(s)	2675
PasI	CCCWGGG	1 cut(s)	1762
PciI	ACATGT	1 cut(s)	2109
PciSI	GCTCTTC	1 cut(s)	2265
PcsI	WCGNNNNNNNCGW	1 cut(s)	395
PdmI	GAANNNNTTC	1 cut(s)	2387
PfeI	GAWTC	4 cut(s)	302, 816, 2573, 2672
PflFI	GACNNNGTC	2 cut(s)	287, 2184
PflMI	CCANNNNNTGG	1 cut(s)	214
PkrI	GCNGC	4 cut(s)	764, 1465, 2371, 2481
PleI	GAGTC	9 cut(s)	36, 529, 912, 1067, 1126, 1538, 1591, 1727, 1762
PpsI	GAGTC	9 cut(s)	36, 529, 912, 1067, 1126, 1538, 1591, 1727, 1762
PscI	ACATGT	1 cut(s)	2109
PsiI	TTATAA	1 cut(s)	1154
Psp1406I	AACGTT	2 cut(s)	633, 822
Psp6I	CCWGG	4 cut(s)	1055, 1261, 1761, 2289
PspFI	CCCAGC	2 cut(s)	487, 674
PspGI	CCWGG	4 cut(s)	1055, 1261, 1761, 2289
PspN4I	GGNNCC	5 cut(s)	406, 547, 1768, 2011, 2163
PspPI	GGNCC	3 cut(s)	457, 2161, 2301
PsuI	RGATCY	1 cut(s)	651
PsyI	GACNNNGTC	2 cut(s)	287, 2184
RseI	CAYNNNNRTG	7 cut(s)	1107, 1484, 1998, 2025, 2135, 2319, 2421
SapI	GCTCTTC	1 cut(s)	2265
SaqAI	TTAA	7 cut(s)	264, 570, 657, 1281, 1779, 2354, 2580
SatI	GCNGC	4 cut(s)	763, 1464, 2370, 2480
Sau96I	GGNCC	3 cut(s)	457, 2161, 2301
ScaI	AGTACT	1 cut(s)	2171
SchI	GAGTC	9 cut(s)	37, 530, 912, 1067, 1127, 1538, 1592, 1728, 1763
ScrFI	CCNGG	7 cut(s)	124, 455, 456, 1057, 1263, 1763, 2291
SduI	GDGCHC	5 cut(s)	615, 1771, 2012, 2039, 2102
SexAI	ACCWGGT	1 cut(s)	1055
SfaNI	GCATC	9 cut(s)	371, 580, 711, 795, 868, 1327, 1785, 2250, 2647
SfcI	CTRYAG	2 cut(s)	345, 800
Sfr274I	CTCGAG	1 cut(s)	397
SinI	GGWCC	1 cut(s)	2161
SlaI	CTCGAG	1 cut(s)	397
SmaI	CCCGGG	1 cut(s)	456
SmiMI	CAYNNNNRTG	7 cut(s)	1107, 1484, 1998, 2025, 2135, 2319, 2421
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
SphI	GCATGC	1 cut(s)	2416
SsiI	CCGC	4 cut(s)	828, 1137, 1928, 2176
SspMI	CTAG	1 cut(s)	1313
StyD4I	CCNGG	7 cut(s)	122, 453, 454, 1055, 1261, 1761, 2289
StyI	CCWWGG	3 cut(s)	409, 846, 2094
TaaI	ACNGT	7 cut(s)	145, 269, 610, 946, 1997, 2024, 2134
TaiI	ACGT	5 cut(s)	636, 825, 1151, 2188, 2208
TaqI	TCGA	6 cut(s)	307, 398, 719, 1356, 1710, 1791
TaqII	GACCGA	1 cut(s)	999
TatI	WGTACW	8 cut(s)	626, 911, 975, 1325, 1447, 1695, 2169, 2208
TfiI	GAWTC	4 cut(s)	302, 816, 2573, 2672
Tru1I	TTAA	7 cut(s)	264, 570, 657, 1281, 1779, 2354, 2580
Tru9I	TTAA	7 cut(s)	264, 570, 657, 1281, 1779, 2354, 2580
TscAI	CASTG	8 cut(s)	30, 298, 928, 1546, 1626, 2002, 2262, 2521
TseFI	GTSAC	5 cut(s)	281, 293, 1584, 1720, 1901
TseI	GCWGC	4 cut(s)	762, 1463, 2369, 2479
Tsp45I	GTSAC	5 cut(s)	281, 293, 1584, 1720, 1901
TspDTI	ATGAA	9 cut(s)	108, 170, 457, 483, 685, 1037, 1361, 1654, 2669
TspGWI	ACGGA	2 cut(s)	1799, 1799
TspMI	CCCGGG	1 cut(s)	454
TspRI	CASTG	8 cut(s)	30, 298, 928, 1546, 1626, 2002, 2262, 2521
Tth111I	GACNNNGTC	2 cut(s)	287, 2184
Van91I	CCANNNNNTGG	1 cut(s)	214
VpaK11BI	GGWCC	1 cut(s)	2161
XapI	RAATTY	3 cut(s)	427, 620, 956
XceI	RCATGY	2 cut(s)	2113, 2416
XhoI	CTCGAG	1 cut(s)	397
XmaI	CCCGGG	1 cut(s)	454
XmiI	GTMKAC	1 cut(s)	1071
XmnI	GAANNNNTTC	1 cut(s)	2387
XspI	CTAG	1 cut(s)	1313
ZrmI	AGTACT	1 cut(s)	2171
Zsp2I	ATGCAT	2 cut(s)	1342, 2418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.