Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Reverse (-)

9577803 .. 9580462

Gene Structure 2660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G005000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2604 bp

ATGAAACCAATTCTCGCTCCTCTTTACCCTTTCAGCTTGTTTCTCCTCTTCGTCACCCTACTGGTGACCGGAGAGTCCACAACCATCTACTCTCCAACCGATGTTATCAACCTTAGCTGTGGCTCATCCAGCGGCATGGACCCTGACTATGATTCTCGAACTTGGAGAGGAGATATAAACTCGAATCTTTCCCCAATAGAAGTTCGTAGTACATCCGAGGCTTTGCAAGCATCAGACAGCTACACGACTTATTTGGCGCCGCCGTACGCCACAGCACGGCTTTCTCACTCAGAATTCACTTACCAGTTTCCCGTCAATCCTGGCCAAAAGTTCATCCGCTTGTATTTCTACCCAGATTCATACAACGCCGACTTCGAACGCTCCGAGTCTCTCTTCTCTGTCAAAGCCGGTGGCTACACCCTTCTCAAAGACTTCAATGCTTCTGTCACTGCAGATGCTCATGGTGATTCTTCTGAGAAGATGCTCAAAGAATTCTGTATTAACATTGAGCAAGAACAACAGGTGCTGAACATCACATTCACTCCCAGCAAAGATGGATACGCGTTTATCAACGGGATTGAAATTATGTCCATGCCTGCCTCTCTTTACTACACTGCAGCCCAAGGCGATGGGCCTAGTCTTATCGGCACCCAAAACCGGTACCCTGTGAAAAACAACACCGCTCTGGAGAATATCTACCGAATCAACGTCAGTGGATACAACGACTTCGGTGGATACTCGCTCTCACCGAATGAAGACACCGGCATGTACCGCACCTGGGATTCAAGCGACCAGATCTACTTATTGGATTATTCAAGTTTCGGGTCGACAACATCCAGATTTGACCTGCCCCGGAAGAATCACCAGTTTCCTCTGCTCAAATTTGCAAGAATCCCCAACTACACTGCCCCGGAAGAGGTTTACCTAACCGGCATGGAGAGCTACAATCTCACCTGGGGGTTTCCTGTAGATCCACAATTTAATTACCTGGTGAGGCTTCATTTTTGTGAGATTGTACCAAATTATACGATGGATGGAGATCGTGTGTTTCAGATTTTTATAAATAACCAAACAGCGGAGCAGAAAGCGGACATAATCCAATGGAGTGGAGGAAATGGGATTCCCGTATATAGAGACTACCTTCTGTTCGTTCCCAGTCGTCCAAACAAGAAGAAAGGTAAAGTTGATATCATTGTTGCACTACAAGCAAATTCGGAATCTCGATATAAGGATGCAATCTTGAATGGGCTCGAAATCTTCAAACTGAATGACACAAACGGCAATCTCGCCGGACCCAATCCCGACCCGCCACCACCTCCACCGCCGCCACCGCCACCGCCGCCAACACCGCCGTTCTCAATCCCGACACAAACGGAAAAACCGACTTTGATTCCTATGCTTGCTATCCTTGCTGGTGTAGTTTCGGTCTTATTTGCTCTTTCCCTTGTCGGGTTTTTAGTTTTGAGGCGTGGAAGAAAACTAAAGGACTCCAGCTCCAGCCACAGGATGACAAGGCCAGCCATGACCACTGGGTCACATTTACCATCTTATTTGTGTCGTTACTTTTCACTGGCAGAGATCAAAGCCGCCACCAAATACTTCGATGATACTTTCATTATTGGAGCTGGGGGATTTGGCAACGTATACAAAGGATTCATCGATGGTGGAGGCACTCCAGTTGCAATCAAACGGCTGAAAGCCATGTCATCACAGGGGTCCCGCGAGTTTAGGACGGAAATTGAGATGCTCTCTCGACTCCGCCACCGCCATTTGGTGTCTCTTATCGGATTTTGTGCCGATGAAGGTGAGATGATCTTGGTGTACGATTACATGGCACGTGGGACCCTTCGTGATCATCTCTACCACACTGATAATCCACCTCTTCCATGGGAACATCGGCTTCAAATTTGTATTGGCGCGGCGCAAGGTTTGCACTATCTTCACACAGGTACCAAGGGCACCGTCATTCACCGTGACGTAAAGAGCACAAACATATTATTGGATGAGAAATGGGTAGCCAAGGTTTCAGATTTTGGGTTGTCAAGAAAGGGCACAATCACCGTGTCCAAGACCCACATTAGCACGAAGGTGAAGGGTAGTTTTGGATATCTTGACCCGGATTACTATCGACGTCAACAATTAACTGAGAAGTCTGATGTGTACTCCTTCGGTGTAGTGTTGTGCGAGGTATTGTGTGGAAGGCCAGCTATAACAACTGTAGAGAATAATCGAGTTGGCTTAGCCGGATGGGCCAAGAAGTGTCATCATAATGGGAAACTTGATCAAATTATTGACCCAAATTTAAACGGTAAGATTGCGGCACAATGCTTGCACAAATTTGTTACCATGGCGATGAATTGCATAGATGATAATGGAGTCAATCGACCTTCAATGGATAATGTTGTGAGAGGGCTTCAATTTGCATTGCAGTTGCAACAGAACAACGAGGATTATATTGATTACGTTGAAAGGACGCATGAAGATGAGATTGTTTCGATCAAGGACAATGAAGGGTCCAGTGAACAAGATTGTGGGGCGAACGAATCCGTGCAAGGGTTGACTGGGACAATCTTCTCTGAGATCATCGATCCGATTGGTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

867

Amino Acids

96.79

Weight (kDa)

5.99

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	38 - 421	4e-29	Malectin-like domain
Malectin	PF11721	296 - 381	5.5e-10	Malectin domain
Pkinase	PF00069	539 - 802	4.2e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	540 - 803	6.6e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1061
AasI	GACNNNNNNGTC	2 cut(s)	73, 1531
AatII	GACGTC	1 cut(s)	2134
Acc36I	ACCTGC	1 cut(s)	855
Acc65I	GGTACC	2 cut(s)	660, 1949
AccB1I	GGYRCC	5 cut(s)	256, 647, 660, 1949, 1958
AccBSI	CCGCTC	1 cut(s)	683
AccI	GTMKAC	2 cut(s)	827, 1644
AccII	CGCG	3 cut(s)	563, 1722, 1919
AclWI	GGATC	2 cut(s)	965, 2582
AcoI	YGGCCR	1 cut(s)	322
AcsI	RAATTY	7 cut(s)	293, 491, 881, 1210, 1905, 2299, 2336
AcvI	CACGTG	1 cut(s)	1838
AcyI	GRCGYC	2 cut(s)	257, 2131
AfaI	GTAC	8 cut(s)	211, 266, 662, 770, 1017, 1823, 1951, 2162
AfiI	CCNNNNNNNGG	9 cut(s)	276, 657, 778, 916, 1075, 1449, 1503, 1771, 2553
AflIII	ACRYGT	1 cut(s)	561
AgeI	ACCGGT	1 cut(s)	657
AjnI	CCWGG	4 cut(s)	319, 776, 953, 987
AleI	CACNNNNGTG	1 cut(s)	2087
AluBI	AGCT	7 cut(s)	36, 117, 240, 942, 1494, 1625, 2207
AluI	AGCT	7 cut(s)	36, 117, 240, 942, 1494, 1625, 2207
Alw21I	GWGCWC	1 cut(s)	1988
Alw26I	GTCTC	3 cut(s)	393, 1128, 1782
AlwI	GGATC	2 cut(s)	965, 2582
AlwNI	CAGNNNCTG	1 cut(s)	526
AoxI	GGCC	5 cut(s)	322, 632, 1514, 2201, 2250
ApeKI	GCWGC	1 cut(s)	617
ApoI	RAATTY	7 cut(s)	293, 491, 881, 1210, 1905, 2299, 2336
AsiGI	ACCGGT	1 cut(s)	657
Asp718I	GGTACC	2 cut(s)	660, 1949
AspLEI	GCGC	3 cut(s)	259, 1919, 1924
AspS9I	GGNCC	7 cut(s)	139, 632, 1292, 1716, 1842, 2250, 2514
AsuC2I	CCSGG	3 cut(s)	853, 911, 2117
AsuII	TTCGAA	1 cut(s)	375
AvaII	GGWCC	5 cut(s)	139, 1292, 1716, 1842, 2514
BaeGI	GKGCMC	2 cut(s)	1961, 2054
BaeI	ACNNNNGTAYC	2 cut(s)	1933, 1966
BalI	TGGCCA	1 cut(s)	324
BanI	GGYRCC	5 cut(s)	256, 647, 660, 1949, 1958
BanII	GRGCYC	1 cut(s)	1251
BbrPI	CACGTG	1 cut(s)	1838
BbsI	GAAGAC	1 cut(s)	762
Bbv12I	GWGCWC	1 cut(s)	1988
BbvI	GCAGC	1 cut(s)	629
BccI	CCATC	8 cut(s)	92, 548, 623, 1024, 1028, 1552, 1655, 2241
BceAI	ACGGC	5 cut(s)	247, 293, 1294, 1336, 1706
BciT130I	CCWGG	4 cut(s)	321, 778, 955, 989
BciVI	GTATCC	3 cut(s)	551, 710, 728
BclI	TGATCA	2 cut(s)	1852, 2281
BcnI	CCSGG	3 cut(s)	853, 911, 2117
BcoDI	GTCTC	3 cut(s)	393, 1128, 1782
BfaI	CTAG	1 cut(s)	636
BfmI	CTRYAG	4 cut(s)	450, 615, 966, 2217
BfoI	RGCGCY	1 cut(s)	260
BfuAI	ACCTGC	1 cut(s)	855
BfuI	GTATCC	3 cut(s)	551, 710, 728
BglI	GCCNNNNNGGC	1 cut(s)	2249
BglII	AGATCT	1 cut(s)	795
BisI	GCNGC	8 cut(s)	133, 260, 618, 1325, 1340, 1587, 1920, 2319
BlpI	GCTNAGC	1 cut(s)	2239
BlsI	GCNGC	8 cut(s)	134, 261, 619, 1326, 1341, 1588, 1921, 2320
Bme1390I	CCNGG	7 cut(s)	321, 778, 853, 911, 955, 989, 2117
Bme18I	GGWCC	5 cut(s)	139, 1292, 1716, 1842, 2514
BmgT120I	GGNCC	7 cut(s)	139, 632, 1292, 1716, 1842, 2250, 2514
BmrFI	CCNGG	7 cut(s)	321, 778, 853, 911, 955, 989, 2117
BmrI	ACTGGG	3 cut(s)	1149, 1539, 2571
BmsI	GCATC	5 cut(s)	239, 445, 471, 1222, 1734
BmuI	ACTGGG	3 cut(s)	1149, 1539, 2571
BpiI	GAAGAC	1 cut(s)	762
BplI	GAGNNNNNCTC	2 cut(s)	1733, 1765
BpmI	CTGGAG	4 cut(s)	707, 1474, 1480, 1659
Bpu10I	CCTNAGC	1 cut(s)	113
Bpu1102I	GCTNAGC	1 cut(s)	2239
Bpu14I	TTCGAA	1 cut(s)	375
BpuMI	CCSGG	3 cut(s)	853, 911, 2117
Bsa29I	ATCGAT	2 cut(s)	1659, 2586
BsaAI	YACGTR	1 cut(s)	1838
BsaBI	GATNNNNATC	2 cut(s)	1038, 2124
BsaHI	GRCGYC	2 cut(s)	257, 2131
BsaWI	WCCGGW	2 cut(s)	68, 657
BsaXI	ACNNNNNCTCC	6 cut(s)	526, 556, 1029, 1059, 1478, 1508
Bsc4I	CCNNNNNNNGG	9 cut(s)	276, 657, 778, 916, 1075, 1449, 1503, 1771, 2553
Bse118I	RCCGGY	4 cut(s)	407, 657, 761, 929
Bse1I	ACTGG	9 cut(s)	66, 304, 865, 1155, 1534, 1575, 1676, 2517, 2566
Bse3DI	GCAATG	1 cut(s)	2423
Bse8I	GATNNNNATC	2 cut(s)	1038, 2124
BseBI	CCWGG	4 cut(s)	321, 778, 955, 989
BseCI	ATCGAT	2 cut(s)	1659, 2586
BseGI	GGATG	9 cut(s)	125, 212, 333, 833, 1039, 1237, 1512, 2008, 2252
BseJI	GATNNNNATC	2 cut(s)	1038, 2124
BseLI	CCNNNNNNNGG	9 cut(s)	276, 657, 778, 916, 1075, 1449, 1503, 1771, 2553
BseMI	GCAATG	1 cut(s)	2423
BseMII	CTCAG	4 cut(s)	303, 465, 2136, 2568
BseNI	ACTGG	9 cut(s)	66, 304, 865, 1155, 1534, 1575, 1676, 2517, 2566
BseRI	GAGGAG	3 cut(s)	9, 35, 183
BseSI	GKGCMC	2 cut(s)	1961, 2054
BseXI	GCAGC	1 cut(s)	629
BseYI	CCCAGC	2 cut(s)	545, 1625
Bsh1236I	CGCG	3 cut(s)	563, 1722, 1919
BshFI	GGCC	5 cut(s)	324, 634, 1516, 2203, 2252
BshNI	GGYRCC	5 cut(s)	256, 647, 660, 1949, 1958
BshTI	ACCGGT	1 cut(s)	657
BshVI	ATCGAT	2 cut(s)	1659, 2586
BsiHKAI	GWGCWC	1 cut(s)	1988
BsiWI	CGTACG	1 cut(s)	264
BslFI	GGGAC	3 cut(s)	1702, 1855, 2578
BslI	CCNNNNNNNGG	9 cut(s)	276, 657, 778, 916, 1075, 1449, 1503, 1771, 2553
BsmAI	GTCTC	3 cut(s)	393, 1128, 1782
BsmFI	GGGAC	3 cut(s)	1702, 1855, 2578
BsnI	GGCC	5 cut(s)	324, 634, 1516, 2203, 2252
Bsp119I	TTCGAA	1 cut(s)	375
Bsp1286I	GDGCHC	4 cut(s)	1251, 1961, 1988, 2054
Bsp1720I	GCTNAGC	1 cut(s)	2239
Bsp19I	CCATGG	2 cut(s)	1886, 2346
BspANI	GGCC	5 cut(s)	324, 634, 1516, 2203, 2252
BspCNI	CTCAG	4 cut(s)	302, 466, 2137, 2569
BspDI	ATCGAT	2 cut(s)	1659, 2586
BspFNI	CGCG	3 cut(s)	563, 1722, 1919
BspMAI	CTGCAG	2 cut(s)	454, 619
BspMI	ACCTGC	1 cut(s)	855
BspPI	GGATC	2 cut(s)	965, 2582
BspT104I	TTCGAA	1 cut(s)	375
BspT107I	GGYRCC	5 cut(s)	256, 647, 660, 1949, 1958
BsrBI	CCGCTC	1 cut(s)	683
BsrDI	GCAATG	1 cut(s)	2423
BsrFI	RCCGGY	4 cut(s)	407, 657, 761, 929
BsrI	ACTGG	9 cut(s)	66, 304, 865, 1155, 1534, 1575, 1676, 2517, 2566
BssAI	RCCGGY	4 cut(s)	407, 657, 761, 929
BssNAI	GTATAC	1 cut(s)	1645
BssNI	GRCGYC	2 cut(s)	257, 2131
BssT1I	CCWWGG	5 cut(s)	622, 1886, 1953, 2019, 2346
Bst1107I	GTATAC	1 cut(s)	1645
Bst2UI	CCWGG	4 cut(s)	321, 778, 955, 989
Bst4CI	ACNGT	5 cut(s)	1963, 1973, 2062, 2218, 2309
Bst6I	CTCTTC	4 cut(s)	53, 398, 909, 1887
BstACI	GRCGYC	2 cut(s)	257, 2131
BstAPI	GCANNNNNTGC	1 cut(s)	1930
BstBAI	YACGTR	1 cut(s)	1838
BstBI	TTCGAA	1 cut(s)	375
BstC8I	GCNNGC	6 cut(s)	228, 597, 1401, 1518, 2205, 2330
BstDEI	CTNAG	6 cut(s)	113, 289, 474, 2145, 2239, 2577
BstDSI	CCRYGG	2 cut(s)	1886, 2346
BstEII	GGTNACC	1 cut(s)	64
BstF5I	GGATG	9 cut(s)	125, 212, 333, 833, 1039, 1237, 1512, 2008, 2252
BstFNI	CGCG	3 cut(s)	563, 1722, 1919
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	3 cut(s)	259, 1919, 1924
BstMAI	GTCTC	3 cut(s)	393, 1128, 1782
BstNI	CCWGG	4 cut(s)	321, 778, 955, 989
BstNSI	RCATGY	1 cut(s)	769
BstPI	GGTNACC	1 cut(s)	64
BstSCI	CCNGG	7 cut(s)	319, 776, 851, 909, 953, 987, 2115
BstSFI	CTRYAG	4 cut(s)	450, 615, 966, 2217
BstSLI	GKGCMC	2 cut(s)	1961, 2054
BstUI	CGCG	3 cut(s)	563, 1722, 1919
BstV1I	GCAGC	1 cut(s)	629
BstV2I	GAAGAC	1 cut(s)	762
BstX2I	RGATCY	2 cut(s)	795, 970
BstXI	CCANNNNNNTGG	3 cut(s)	136, 629, 1106
BstYI	RGATCY	2 cut(s)	795, 970
BstZ17I	GTATAC	1 cut(s)	1645
Bsu15I	ATCGAT	2 cut(s)	1659, 2586
BsuI	GTATCC	3 cut(s)	551, 710, 728
BsuRI	GGCC	5 cut(s)	324, 634, 1516, 2203, 2252
BsuTUI	ATCGAT	2 cut(s)	1659, 2586
BtgI	CCRYGG	2 cut(s)	1886, 2346
BtgZI	GCGATG	2 cut(s)	642, 2366
BtsCI	GGATG	9 cut(s)	125, 212, 333, 833, 1039, 1237, 1512, 2008, 2252
BtsI	GCAGTG	3 cut(s)	447, 612, 903
BtsIMutI	CAGTG	8 cut(s)	447, 612, 718, 903, 1527, 1568, 1866, 2524
BveI	ACCTGC	1 cut(s)	855
Cac8I	GCNNGC	6 cut(s)	228, 597, 1401, 1518, 2205, 2330
CaiI	CAGNNNCTG	1 cut(s)	526
CfoI	GCGC	3 cut(s)	259, 1919, 1924
Cfr10I	RCCGGY	4 cut(s)	407, 657, 761, 929
Cfr13I	GGNCC	7 cut(s)	139, 632, 1292, 1716, 1842, 2250, 2514
ClaI	ATCGAT	2 cut(s)	1659, 2586
CseI	GACGC	1 cut(s)	2482
CsiI	ACCWGGT	1 cut(s)	987
Csp6I	GTAC	8 cut(s)	210, 265, 661, 769, 1016, 1822, 1950, 2161
CspAI	ACCGGT	1 cut(s)	657
CspCI	CAANNNNNGTGG	4 cut(s)	391, 426, 694, 729
CviQI	GTAC	8 cut(s)	210, 265, 661, 769, 1016, 1822, 1950, 2161
DdeI	CTNAG	6 cut(s)	113, 289, 474, 2145, 2239, 2577
DinI	GGCGCC	1 cut(s)	258
DraI	TTTAAA	1 cut(s)	2304
DrdI	GACNNNNNNGTC	2 cut(s)	73, 1531
DseDI	GACNNNNNNGTC	2 cut(s)	73, 1531
EaeI	YGGCCR	1 cut(s)	322
Eam1104I	CTCTTC	4 cut(s)	53, 398, 909, 1887
EarI	CTCTTC	4 cut(s)	53, 398, 909, 1887
EciI	GGCGGA	1 cut(s)	1748
Eco130I	CCWWGG	5 cut(s)	622, 1886, 1953, 2019, 2346
Eco24I	GRGCYC	1 cut(s)	1251
Eco32I	GATATC	2 cut(s)	1189, 2108
Eco47I	GGWCC	5 cut(s)	139, 1292, 1716, 1842, 2514
Eco72I	CACGTG	1 cut(s)	1838
Eco91I	GGTNACC	1 cut(s)	64
EcoO109I	RGGNCCY	2 cut(s)	1716, 1842
EcoO65I	GGTNACC	1 cut(s)	64
EcoRI	GAATTC	2 cut(s)	293, 491
EcoRII	CCWGG	4 cut(s)	319, 776, 953, 987
EcoRV	GATATC	2 cut(s)	1189, 2108
EcoT14I	CCWWGG	5 cut(s)	622, 1886, 1953, 2019, 2346
EcoT38I	GRGCYC	1 cut(s)	1251
EgeI	GGCGCC	1 cut(s)	258
EheI	GGCGCC	1 cut(s)	258
ErhI	CCWWGG	5 cut(s)	622, 1886, 1953, 2019, 2346
FaqI	GGGAC	3 cut(s)	1702, 1855, 2578
FauI	CCCGC	2 cut(s)	1314, 1727
FbaI	TGATCA	2 cut(s)	1852, 2281
FblI	GTMKAC	2 cut(s)	827, 1644
Fnu4HI	GCNGC	8 cut(s)	133, 260, 618, 1325, 1340, 1587, 1920, 2319
FokI	GGATG	9 cut(s)	112, 199, 320, 820, 1046, 1244, 1519, 2015, 2259
FriOI	GRGCYC	1 cut(s)	1251
Fsp4HI	GCNGC	8 cut(s)	133, 260, 618, 1325, 1340, 1587, 1920, 2319
FspBI	CTAG	1 cut(s)	636
GlaI	GCGC	3 cut(s)	258, 1918, 1923
GluI	GCNGC	8 cut(s)	133, 260, 618, 1325, 1340, 1587, 1920, 2319
GsaI	CCCAGC	2 cut(s)	549, 1629
GsuI	CTGGAG	4 cut(s)	707, 1474, 1480, 1659
HaeII	RGCGCY	1 cut(s)	260
HaeIII	GGCC	5 cut(s)	324, 634, 1516, 2203, 2252
HgaI	GACGC	1 cut(s)	2482
HhaI	GCGC	3 cut(s)	259, 1919, 1924
Hin1I	GRCGYC	2 cut(s)	257, 2131
Hin6I	GCGC	3 cut(s)	257, 1917, 1922
HinP1I	GCGC	3 cut(s)	257, 1917, 1922
HincII	GTYRAC	3 cut(s)	828, 2135, 2559
HindII	GTYRAC	3 cut(s)	828, 2135, 2559
Hpy166II	GTNNAC	9 cut(s)	78, 828, 922, 1645, 1822, 2135, 2161, 2522, 2559
Hpy8I	GTNNAC	9 cut(s)	78, 828, 922, 1645, 1822, 2135, 2161, 2522, 2559
Hpy99I	CGWCG	1 cut(s)	2133
HpyCH4III	ACNGT	5 cut(s)	1963, 1973, 2062, 2218, 2309
HpyCH4IV	ACGT	6 cut(s)	708, 1641, 1837, 1977, 2131, 2463
HpyF3I	CTNAG	6 cut(s)	113, 289, 474, 2145, 2239, 2577
HpySE526I	ACGT	6 cut(s)	708, 1641, 1837, 1977, 2131, 2463
Hsp92I	GRCGYC	2 cut(s)	257, 2131
HspAI	GCGC	3 cut(s)	257, 1917, 1922
KasI	GGCGCC	1 cut(s)	256
KflI	GGGWCCC	2 cut(s)	1716, 1842
KpnI	GGTACC	2 cut(s)	664, 1953
Ksp22I	TGATCA	2 cut(s)	1852, 2281
LmnI	GCTCC	5 cut(s)	22, 386, 1078, 1499, 1622
Lsp1109I	GCAGC	1 cut(s)	629
LweI	GCATC	5 cut(s)	239, 445, 471, 1222, 1734
MabI	ACCWGGT	1 cut(s)	987
MaeI	CTAG	1 cut(s)	636
MaeII	ACGT	6 cut(s)	708, 1641, 1837, 1977, 2131, 2463
MaeIII	GTNAC	7 cut(s)	52, 64, 445, 1533, 1559, 1973, 2341
MbiI	CCGCTC	1 cut(s)	683
MflI	RGATCY	2 cut(s)	795, 970
MhlI	GDGCHC	4 cut(s)	1251, 1961, 1988, 2054
MlsI	TGGCCA	1 cut(s)	324
MluI	ACGCGT	1 cut(s)	561
MluNI	TGGCCA	1 cut(s)	324
Mly113I	GGCGCC	1 cut(s)	257
MlyI	GAGTC	5 cut(s)	83, 395, 1481, 1749, 2385
MmeI	TCCRAC	1 cut(s)	119
Mox20I	TGGCCA	1 cut(s)	324
MscI	TGGCCA	1 cut(s)	324
MseI	TTAA	4 cut(s)	501, 981, 2141, 2303
MslI	CAYNNNNRTG	6 cut(s)	764, 1005, 2087, 2268, 2351, 2481
Msp20I	TGGCCA	1 cut(s)	324
MspA1I	CMGCKG	2 cut(s)	132, 1076
MspR9I	CCNGG	7 cut(s)	321, 778, 853, 911, 955, 989, 2117
MteI	GCGCNGCGC	1 cut(s)	1920
MvaI	CCWGG	4 cut(s)	321, 778, 955, 989
MvnI	CGCG	3 cut(s)	563, 1722, 1919
NarI	GGCGCC	1 cut(s)	257
NciI	CCSGG	3 cut(s)	853, 911, 2117
NcoI	CCATGG	2 cut(s)	1886, 2346
NmuCI	GTSAC	5 cut(s)	52, 64, 445, 1533, 1973
NspI	RCATGY	1 cut(s)	769
NspV	TTCGAA	1 cut(s)	375
OliI	CACNNNNGTG	1 cut(s)	2087
PcsI	WCGNNNNNNNCGW	4 cut(s)	372, 381, 746, 1379
Pfl23II	CGTACG	1 cut(s)	264
PinAI	ACCGGT	1 cut(s)	657
PkrI	GCNGC	8 cut(s)	134, 261, 619, 1326, 1341, 1588, 1921, 2320
PleI	GAGTC	5 cut(s)	82, 394, 1481, 1749, 2384
PluTI	GGCGCC	1 cut(s)	260
PmaCI	CACGTG	1 cut(s)	1838
PmlI	CACGTG	1 cut(s)	1838
PpsI	GAGTC	5 cut(s)	82, 394, 1481, 1749, 2384
Ppu21I	YACGTR	1 cut(s)	1838
PpuMI	RGGWCCY	2 cut(s)	1716, 1842
PsiI	TTATAA	1 cut(s)	1061
Psp5II	RGGWCCY	2 cut(s)	1716, 1842
Psp6I	CCWGG	4 cut(s)	319, 776, 953, 987
PspCI	CACGTG	1 cut(s)	1838
PspEI	GGTNACC	1 cut(s)	64
PspFI	CCCAGC	2 cut(s)	545, 1625
PspGI	CCWGG	4 cut(s)	319, 776, 953, 987
PspLI	CGTACG	1 cut(s)	264
PspPI	GGNCC	7 cut(s)	139, 632, 1292, 1716, 1842, 2250, 2514
PspPPI	RGGWCCY	2 cut(s)	1716, 1842
PstI	CTGCAG	2 cut(s)	454, 619
PstNI	CAGNNNCTG	1 cut(s)	526
PsuI	RGATCY	2 cut(s)	795, 970
RsaI	GTAC	8 cut(s)	211, 266, 662, 770, 1017, 1823, 1951, 2162
RsaNI	GTAC	8 cut(s)	210, 265, 661, 769, 1016, 1822, 1950, 2161
RseI	CAYNNNNRTG	6 cut(s)	764, 1005, 2087, 2268, 2351, 2481
SalI	GTCGAC	1 cut(s)	826
SaqAI	TTAA	4 cut(s)	501, 981, 2141, 2303
SatI	GCNGC	8 cut(s)	133, 260, 618, 1325, 1340, 1587, 1920, 2319
Sau96I	GGNCC	7 cut(s)	139, 632, 1292, 1716, 1842, 2250, 2514
SchI	GAGTC	5 cut(s)	83, 395, 1481, 1749, 2385
ScrFI	CCNGG	7 cut(s)	321, 778, 853, 911, 955, 989, 2117
SduI	GDGCHC	4 cut(s)	1251, 1961, 1988, 2054
SexAI	ACCWGGT	1 cut(s)	987
SfaNI	GCATC	5 cut(s)	239, 445, 471, 1222, 1734
SfcI	CTRYAG	4 cut(s)	450, 615, 966, 2217
SfoI	GGCGCC	1 cut(s)	258
SfuI	TTCGAA	1 cut(s)	375
SinI	GGWCC	5 cut(s)	139, 1292, 1716, 1842, 2514
SmiMI	CAYNNNNRTG	6 cut(s)	764, 1005, 2087, 2268, 2351, 2481
SspDI	GGCGCC	1 cut(s)	256
SspMI	CTAG	1 cut(s)	636
StyD4I	CCNGG	7 cut(s)	319, 776, 851, 909, 953, 987, 2115
StyI	CCWWGG	5 cut(s)	622, 1886, 1953, 2019, 2346
TaaI	ACNGT	5 cut(s)	1963, 1973, 2062, 2218, 2309
TaiI	ACGT	6 cut(s)	711, 1644, 1840, 1980, 2134, 2466
TaqII	GACCGA	1 cut(s)	1414
TatI	WGTACW	2 cut(s)	209, 2160
TauI	GCSGC	7 cut(s)	135, 262, 1327, 1342, 1589, 1922, 2321
Tru1I	TTAA	4 cut(s)	501, 981, 2141, 2303
Tru9I	TTAA	4 cut(s)	501, 981, 2141, 2303
TscAI	CASTG	8 cut(s)	454, 619, 718, 910, 1534, 1575, 1873, 2524
TseFI	GTSAC	5 cut(s)	52, 64, 445, 1533, 1973
TseI	GCWGC	1 cut(s)	617
Tsp45I	GTSAC	5 cut(s)	52, 64, 445, 1533, 1973
TspGWI	ACGGA	3 cut(s)	1388, 1748, 2536
TspRI	CASTG	8 cut(s)	454, 619, 718, 910, 1534, 1575, 1873, 2524
VpaK11BI	GGWCC	5 cut(s)	139, 1292, 1716, 1842, 2514
XapI	RAATTY	7 cut(s)	293, 491, 881, 1210, 1905, 2299, 2336
XceI	RCATGY	1 cut(s)	769
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1884
XmiI	GTMKAC	2 cut(s)	827, 1644
XspI	CTAG	1 cut(s)	636
ZraI	GACGTC	1 cut(s)	2132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.