RchiOBHm_Chr4g0400391

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
17943917 .. 17944318
402 bp
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UTR
Exon/CDS
Intron
PRQ37243

Sequence Viewer

Length: 402 bp
ATGTCTAAAACCCACATCAGCACAATGGTGAAAGATAGTTTTGGGTATCTGGACCTAGAATACTACCGCCGACAACGTCTGACTGAGAAGTCAGACGTGTACTCATTTGGTGTAGTGTTGTTTGAGGTATTGTGTGCAAGGCCAGCAATGATTCAGACAGAAGAGCTGAAGCAAGTGAGCCTGGCTGAGTGGGCCAAAATCTGTCAACAGAACGGGGACCTTGATCAAATCATTGATCCAAGTTTGAGAGGTAAGATTTCAGCCGACTGCCTGAATAAGTTCACTGAGGTAGCTATCAGTTGCATGCATGATGACGGGACAGAACGGTCGTCCATGAATGATGTTGTAAAGGAGCTTGAGCTTGCATTGATGCTTCAACAGAGTGCAGAAGGGAATACCTAA

Protein Analysis

133

Amino Acids

15.06

Weight (kDa)

4.78

Isoelectric Point (pI)

53.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 11 - 119 1.4e-09 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 12 - 117 7.4e-07 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000121)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 88, 325
AciI CCGC 1 cut(s) 67
AclWI GGATC 1 cut(s) 230
AcuI CTGAAG 1 cut(s) 188
AfaI GTAC 1 cut(s) 101
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 1 cut(s) 377
AjiI CACGTC 1 cut(s) 97
AjnI CCWGG 1 cut(s) 180
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 4 cut(s) 166, 293, 355, 361
AluI AGCT 4 cut(s) 166, 293, 355, 361
AlwI GGATC 1 cut(s) 230
AoxI GGCC 2 cut(s) 140, 192
Asp700I GAANNNNTTC 1 cut(s) 278
AspS9I GGNCC 3 cut(s) 52, 192, 217
AsuHPI GGTGA 1 cut(s) 40
AvaII GGWCC 2 cut(s) 52, 217
BciT130I CCWGG 1 cut(s) 182
BclI TGATCA 1 cut(s) 223
BfaI CTAG 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 182
Bme18I GGWCC 2 cut(s) 52, 217
BmgBI CACGTC 1 cut(s) 97
BmgT120I GGNCC 3 cut(s) 52, 192, 217
BmiI GGNNCC 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 377
Bse3DI GCAATG 1 cut(s) 153
BseBI CCWGG 1 cut(s) 182
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 3 cut(s) 75, 177, 276
Bsh1285I CGRYCG 1 cut(s) 329
BshFI GGCC 2 cut(s) 142, 194
BsiEI CGRYCG 1 cut(s) 329
BslFI GGGAC 2 cut(s) 230, 331
BsmFI GGGAC 2 cut(s) 230, 331
BsnI GGCC 2 cut(s) 142, 194
Bsp143I GATC 2 cut(s) 223, 235
BspACI CCGC 1 cut(s) 67
BspANI GGCC 2 cut(s) 142, 194
BspCNI CTCAG 3 cut(s) 76, 178, 277
BspLI GGNNCC 1 cut(s) 218
BspPI GGATC 1 cut(s) 230
BspQI GCTCTTC 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 153
BssMI GATC 2 cut(s) 223, 235
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 1 cut(s) 327
Bst6I CTCTTC 1 cut(s) 156
BstC8I GCNNGC 3 cut(s) 144, 305, 363
BstDEI CTNAG 3 cut(s) 84, 186, 285
BstKTI GATC 2 cut(s) 226, 238
BstMBI GATC 2 cut(s) 223, 235
BstMCI CGRYCG 1 cut(s) 329
BstMWI GCNNNNNNNGC 2 cut(s) 143, 191
BstNI CCWGG 1 cut(s) 182
BstNSI RCATGY 1 cut(s) 307
BstSCI CCNGG 1 cut(s) 180
BsuRI GGCC 2 cut(s) 142, 194
BtrI CACGTC 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 3 cut(s) 144, 305, 363
Cfr13I GGNCC 3 cut(s) 52, 192, 217
Csp6I GTAC 1 cut(s) 100
CviAII CATG 3 cut(s) 304, 308, 334
CviJI RGCY 9 cut(s) 142, 166, 180, 185, 194, 263, 293, 355, 361
CviKI_1 RGCY 9 cut(s) 142, 166, 180, 185, 194, 263, 293, 355, 361
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 3 cut(s) 84, 186, 285
DpnI GATC 2 cut(s) 225, 237
DpnII GATC 2 cut(s) 223, 235
DrdI GACNNNNNNGTC 2 cut(s) 88, 325
DseDI GACNNNNNNGTC 2 cut(s) 88, 325
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco47I GGWCC 2 cut(s) 52, 217
Eco57I CTGAAG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 180
EcoT22I ATGCAT 1 cut(s) 309
FaeI CATG 3 cut(s) 307, 311, 337
FaiI YATR 3 cut(s) 305, 309, 335
FaqI GGGAC 2 cut(s) 230, 331
FatI CATG 3 cut(s) 303, 307, 333
FbaI TGATCA 1 cut(s) 223
FspBI CTAG 1 cut(s) 56
HaeIII GGCC 2 cut(s) 142, 194
Hin1II CATG 3 cut(s) 307, 311, 337
HincII GTYRAC 1 cut(s) 206
HindII GTYRAC 1 cut(s) 206
HinfI GANTC 1 cut(s) 151
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 3 cut(s) 100, 206, 282
Hpy188I TCNGA 3 cut(s) 81, 94, 156
Hpy188III TCNNGA 1 cut(s) 50
Hpy8I GTNNAC 3 cut(s) 100, 206, 282
HpyAV CCTTC 1 cut(s) 383
HpyCH4III ACNGT 1 cut(s) 327
HpyCH4IV ACGT 2 cut(s) 76, 96
HpyCH4V TGCA 5 cut(s) 137, 303, 307, 365, 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 191
HpyF3I CTNAG 3 cut(s) 84, 186, 285
HpySE526I ACGT 2 cut(s) 76, 96
Hsp92II CATG 3 cut(s) 307, 311, 337
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 2 cut(s) 223, 235
LguI GCTCTTC 1 cut(s) 156
LmnI GCTCC 1 cut(s) 352
LpnPI CCDG 5 cut(s) 35, 156, 167, 194, 284
LweI GCATC 1 cut(s) 360
MaeI CTAG 1 cut(s) 56
MaeII ACGT 2 cut(s) 76, 96
MalI GATC 2 cut(s) 225, 237
MboI GATC 2 cut(s) 223, 235
MboII GAAGA 1 cut(s) 173
MnlI CCTC 3 cut(s) 118, 242, 280
Mph1103I ATGCAT 1 cut(s) 309
MroXI GAANNNNTTC 1 cut(s) 278
MslI CAYNNNNRTG 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 182
MvaI CCWGG 1 cut(s) 182
MwoI GCNNNNNNNGC 2 cut(s) 143, 191
NdeII GATC 2 cut(s) 223, 235
NlaIII CATG 3 cut(s) 307, 311, 337
NlaIV GGNNCC 1 cut(s) 218
NsiI ATGCAT 1 cut(s) 309
NspI RCATGY 1 cut(s) 307
OliI CACNNNNGTG 1 cut(s) 26
PaeI GCATGC 1 cut(s) 307
PciSI GCTCTTC 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 1 cut(s) 151
PflFI GACNNNGTC 1 cut(s) 75
PpuMI RGGWCCY 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 218
PspPI GGNCC 3 cut(s) 52, 192, 217
PspPPI RGGWCCY 1 cut(s) 217
PsyI GACNNNGTC 1 cut(s) 75
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 26
SapI GCTCTTC 1 cut(s) 156
Sau3AI GATC 2 cut(s) 223, 235
Sau96I GGNCC 3 cut(s) 52, 192, 217
ScrFI CCNGG 1 cut(s) 182
SfaNI GCATC 1 cut(s) 360
SinI GGWCC 2 cut(s) 52, 217
SmiMI CAYNNNNRTG 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
SphI GCATGC 1 cut(s) 307
SsiI CCGC 1 cut(s) 67
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 327
TaiI ACGT 2 cut(s) 79, 99
TatI WGTACW 1 cut(s) 99
TfiI GAWTC 1 cut(s) 151
TscAI CASTG 1 cut(s) 289
TspDTI ATGAA 1 cut(s) 350
TspRI CASTG 1 cut(s) 289
Tth111I GACNNNGTC 1 cut(s) 75
VpaK11BI GGWCC 2 cut(s) 52, 217
XceI RCATGY 1 cut(s) 307
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 1 cut(s) 56
Zsp2I ATGCAT 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.